Wall clock time and date at job start Sun Mar 7 2021 00:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.37657 * 125.67387 * 2 1 4 4 C 1.46675 * 126.23534 * 0.02562 * 3 2 1 5 5 O 1.21700 * 119.99567 * 5.28616 * 4 3 2 6 6 N 1.34771 * 120.00218 * 185.28750 * 4 3 2 7 7 C 1.46505 * 120.00206 * 174.94685 * 6 4 3 8 8 H 1.09007 * 112.90333 * 23.75131 * 7 6 4 9 9 C 1.53775 * 113.61315 * 155.00001 * 7 6 4 10 10 C 1.53782 * 87.08227 * 89.12127 * 9 7 6 11 11 H 1.09006 * 113.61158 * 270.79967 * 10 9 7 12 12 N 1.46495 * 113.61743 * 139.98309 * 10 9 7 13 13 C 1.34773 * 120.00272 * 155.00074 * 12 10 9 14 14 O 1.21509 * 119.99848 * 359.97438 * 13 12 10 15 15 O 1.34634 * 120.00453 * 179.97438 * 13 12 10 16 16 C 1.45195 * 117.00545 * 179.97438 * 15 13 12 17 17 C 1.53003 * 109.47209 * 59.99652 * 16 15 13 18 18 C 1.52999 * 109.47326 * 179.97438 * 16 15 13 19 19 C 1.53000 * 109.47002 * 299.99981 * 16 15 13 20 20 C 1.53775 * 87.07976 * 25.42805 * 10 9 7 21 21 C 1.37877 * 107.53206 * 180.28179 * 3 2 1 22 22 C 1.39840 * 107.08226 * 359.58866 * 21 3 2 23 23 C 1.35449 * 107.86756 * 0.41299 * 22 21 3 24 24 C 1.50694 * 125.56457 * 179.76176 * 23 22 21 25 25 O 1.42898 * 109.47170 * 149.97977 * 24 23 22 26 26 Si 1.86292 * 109.47142 * 29.97611 * 24 23 22 27 27 H 1.09001 * 109.47142 * 95.78570 * 1 2 3 28 28 H 1.09004 * 109.46892 * 215.77939 * 1 2 3 29 29 H 1.09001 * 109.47748 * 335.78021 * 1 2 3 30 30 H 0.97003 * 120.00011 * 354.94707 * 6 4 3 31 31 H 1.09002 * 113.62036 * 334.56646 * 9 7 6 32 32 H 1.08998 * 113.61446 * 203.66560 * 9 7 6 33 33 H 0.97005 * 119.99903 * 334.99445 * 12 10 9 34 34 H 1.09003 * 109.47270 * 60.00253 * 17 16 15 35 35 H 1.08994 * 109.47070 * 180.02562 * 17 16 15 36 36 H 1.08998 * 109.47149 * 300.00287 * 17 16 15 37 37 H 1.09000 * 109.46884 * 60.00315 * 18 16 15 38 38 H 1.09004 * 109.47215 * 179.97438 * 18 16 15 39 39 H 1.08995 * 109.47370 * 300.00061 * 18 16 15 40 40 H 1.08998 * 109.47202 * 59.99807 * 19 16 15 41 41 H 1.09004 * 109.47249 * 180.02562 * 19 16 15 42 42 H 1.09000 * 109.47226 * 299.99696 * 19 16 15 43 43 H 1.09005 * 113.61347 * 89.12198 * 20 10 9 44 44 H 1.08999 * 113.62065 * 220.02055 * 20 10 9 45 45 H 1.07999 * 126.45474 * 179.74013 * 21 3 2 46 46 H 1.08001 * 126.06031 * 180.15641 * 22 21 3 47 47 H 1.09005 * 109.46988 * 269.97829 * 24 23 22 48 48 H 0.96699 * 114.00000 * 299.99744 * 25 24 23 49 49 H 1.48503 * 109.99780 * 58.68407 * 26 24 23 50 50 H 1.48499 * 110.00183 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2677 1.1183 0.0000 4 6 1.8122 2.5125 0.0005 5 8 0.6257 2.7649 0.0981 6 7 2.7076 3.5140 -0.1071 7 6 2.2465 4.9002 -0.2181 8 1 1.2499 5.0502 0.1971 9 6 3.2777 5.9330 0.2664 10 6 3.8251 5.9441 -1.1706 11 1 4.6008 5.1991 -1.3481 12 7 4.1984 7.2784 -1.6461 13 6 5.1202 7.4133 -2.6201 14 8 5.6419 6.4281 -3.1034 15 8 5.4630 8.6396 -3.0575 16 6 6.4628 8.7092 -4.1081 17 6 5.9588 7.9585 -5.3423 18 6 6.7196 10.1730 -4.4716 19 6 7.7632 8.0693 -3.6178 20 6 2.4249 5.4980 -1.6236 21 6 3.5779 0.6890 -0.0065 22 6 3.5521 -0.7092 -0.0008 23 6 2.2555 -1.1009 -0.0004 24 6 1.7710 -2.5278 -0.0002 25 8 0.5134 -2.6038 0.6742 26 14 3.0122 -3.6049 0.8772 27 1 -0.3633 -0.1036 -1.0224 28 1 -0.3633 -0.8338 0.6009 29 1 -0.3634 0.9372 0.4216 30 1 3.6575 3.3170 -0.1111 31 1 3.9814 5.5371 0.9988 32 1 2.8354 6.8810 0.5725 33 1 3.7821 8.0650 -1.2601 34 1 5.0323 8.4143 -5.6917 35 1 6.7095 8.0104 -6.1308 36 1 5.7755 6.9156 -5.0836 37 1 7.0786 10.7081 -3.5925 38 1 7.4705 10.2253 -5.2601 39 1 5.7931 10.6285 -4.8211 40 1 7.5800 7.0264 -3.3591 41 1 8.5139 8.1219 -4.4063 42 1 8.1223 8.6040 -2.7385 43 1 1.7494 6.3272 -1.8343 44 1 2.4399 4.7510 -2.4172 45 1 4.4582 1.3146 -0.0121 46 1 4.4133 -1.3609 -0.0012 47 1 1.6536 -2.8719 -1.0278 48 1 0.5430 -2.3124 1.5957 49 1 3.2049 -3.1267 2.2699 50 1 2.5457 -5.0147 0.8849 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941010_10803936.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:20:27 Heat of formation + Delta-G solvation = -67.361244 kcal Electronic energy + Delta-G solvation = -31496.898253 eV Core-core repulsion = 27106.955757 eV Total energy + Delta-G solvation = -4389.942496 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.188 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.63587 -41.92882 -41.01163 -39.47540 -37.99545 -37.87715 -35.62616 -34.95275 -33.93750 -33.25596 -31.24306 -28.36676 -28.30354 -27.59603 -27.19265 -26.81638 -25.68046 -23.50579 -23.05737 -21.72266 -21.18996 -20.71967 -20.40074 -19.21718 -18.84471 -18.26502 -17.84299 -17.22408 -17.18351 -16.97604 -16.57384 -16.33980 -16.09085 -15.82765 -15.49383 -15.40176 -15.31848 -14.93252 -14.70445 -14.49912 -14.48070 -14.25513 -13.89660 -13.82377 -13.57279 -13.36438 -13.22125 -13.16403 -13.12481 -12.94727 -12.91018 -12.86601 -12.54469 -12.37458 -12.29869 -11.97527 -11.95341 -11.68808 -11.39135 -11.28055 -11.11266 -10.83024 -10.30961 -10.11076 -9.75299 -9.11763 -4.87199 0.32669 1.17260 1.17892 1.49676 1.72516 1.73508 1.76079 2.00434 2.27658 2.31201 3.13895 3.14417 3.32898 3.46056 3.55628 3.67933 3.74257 3.79092 3.82424 3.94484 3.95636 3.97792 4.27933 4.34146 4.42354 4.48293 4.54149 4.55062 4.61334 4.64754 4.67910 4.69380 4.76456 4.76608 4.83098 4.84705 4.87626 4.93784 4.95530 5.08520 5.11609 5.17532 5.24942 5.27199 5.34958 5.50487 5.59577 5.71514 5.97567 6.12064 6.28679 6.39027 6.42871 7.06927 7.34082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.407 5.407 3 C -0.086 4.086 4 C 0.591 3.409 5 O -0.584 6.584 6 N -0.690 5.690 7 C 0.122 3.878 8 H 0.102 0.898 9 C -0.130 4.130 10 C 0.140 3.860 11 H 0.111 0.889 12 N -0.689 5.689 13 C 0.643 3.357 14 O -0.593 6.593 15 O -0.370 6.370 16 C 0.128 3.872 17 C -0.180 4.180 18 C -0.138 4.138 19 C -0.179 4.179 20 C -0.163 4.163 21 C -0.126 4.126 22 C -0.202 4.202 23 C 0.007 3.993 24 C -0.068 4.068 25 O -0.547 6.547 26 Si 0.817 3.183 27 H 0.067 0.933 28 H 0.111 0.889 29 H 0.088 0.912 30 H 0.416 0.584 31 H 0.099 0.901 32 H 0.125 0.875 33 H 0.419 0.581 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.060 0.940 45 H 0.174 0.826 46 H 0.184 0.816 47 H 0.131 0.869 48 H 0.386 0.614 49 H -0.290 1.290 50 H -0.297 1.297 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.037 2.154 1.009 5.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.080 5.080 3 C -0.199 4.199 4 C 0.380 3.620 5 O -0.466 6.466 6 N -0.341 5.341 7 C 0.016 3.984 8 H 0.120 0.880 9 C -0.169 4.169 10 C 0.036 3.964 11 H 0.129 0.871 12 N -0.348 5.348 13 C 0.396 3.604 14 O -0.484 6.484 15 O -0.285 6.285 16 C 0.091 3.909 17 C -0.238 4.238 18 C -0.195 4.195 19 C -0.237 4.237 20 C -0.203 4.203 21 C -0.152 4.152 22 C -0.225 4.225 23 C -0.111 4.111 24 C -0.175 4.175 25 O -0.355 6.355 26 Si 0.719 3.281 27 H 0.086 0.914 28 H 0.129 0.871 29 H 0.106 0.894 30 H 0.254 0.746 31 H 0.118 0.882 32 H 0.143 0.857 33 H 0.256 0.744 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.116 0.884 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.081 0.919 43 H 0.123 0.877 44 H 0.079 0.921 45 H 0.191 0.809 46 H 0.202 0.798 47 H 0.148 0.852 48 H 0.236 0.764 49 H -0.216 1.216 50 H -0.224 1.224 Dipole moment (debyes) X Y Z Total from point charges 4.055 1.219 0.845 4.318 hybrid contribution -1.100 0.648 0.512 1.376 sum 2.954 1.867 1.357 3.749 Atomic orbital electron populations 1.22528 0.76041 1.05894 1.04067 1.43910 1.07062 1.04619 1.52402 1.20196 0.91580 0.87238 1.20894 1.17189 0.85250 0.84327 0.75187 1.90761 1.17944 1.85277 1.52661 1.45197 1.10091 1.05088 1.73716 1.21650 0.99900 0.79927 0.96883 0.88021 1.23725 0.97582 1.00223 0.95322 1.22682 0.95805 0.82988 0.94929 0.87125 1.44734 1.41536 1.10632 1.37911 1.18439 0.79774 0.81985 0.80182 1.90902 1.57511 1.39469 1.60480 1.86311 1.58275 1.29605 1.54284 1.22337 0.85725 0.98375 0.84436 1.22475 1.02345 1.01626 0.97309 1.21893 1.03405 0.91183 1.03049 1.22469 0.96356 1.02192 1.02637 1.24011 0.97649 1.01305 0.97374 1.21731 0.94300 0.95942 1.03236 1.21016 0.95437 0.95538 1.10513 1.21471 0.91562 0.89309 1.08765 1.25273 0.93403 0.94184 1.04633 1.86559 1.30686 1.88360 1.29891 0.93268 0.82841 0.73275 0.78715 0.91393 0.87059 0.89350 0.74569 0.88243 0.85733 0.74395 0.92149 0.89521 0.91740 0.91104 0.88378 0.91308 0.91590 0.89568 0.91853 0.87656 0.92094 0.80855 0.79846 0.85165 0.76388 1.21638 1.22433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.28 10.32 127.77 1.32 1.59 16 2 N -0.41 -2.17 3.16 -519.72 -1.64 -3.81 16 3 C -0.09 -0.43 6.89 40.35 0.28 -0.15 16 4 C 0.59 3.81 7.77 86.45 0.67 4.49 16 5 O -0.58 -7.81 14.12 -4.35 -0.06 -7.87 16 6 N -0.69 0.58 5.25 -444.00 -2.33 -1.75 16 7 C 0.12 -0.29 4.35 45.51 0.20 -0.09 16 8 H 0.10 0.10 7.42 -2.38 -0.02 0.08 16 9 C -0.13 1.02 7.58 31.12 0.24 1.26 16 10 C 0.14 -0.48 4.12 45.52 0.19 -0.29 16 11 H 0.11 -0.12 7.46 -2.38 -0.02 -0.14 16 12 N -0.69 1.17 5.36 -567.63 -3.04 -1.87 16 13 C 0.64 3.34 8.06 129.79 1.05 4.38 16 14 O -0.59 -6.13 11.48 19.81 0.23 -5.91 16 15 O -0.37 -1.65 9.94 -55.43 -0.55 -2.20 16 16 C 0.13 0.29 1.13 -10.79 -0.01 0.27 16 17 C -0.18 -0.53 8.37 71.98 0.60 0.07 16 18 C -0.14 0.35 8.85 71.98 0.64 0.99 16 19 C -0.18 -0.39 8.37 71.98 0.60 0.22 16 20 C -0.16 0.28 7.68 31.12 0.24 0.52 16 21 C -0.13 0.06 10.36 22.57 0.23 0.29 16 22 C -0.20 0.33 9.37 22.01 0.21 0.54 16 23 C 0.01 0.01 6.14 41.34 0.25 0.26 16 24 C -0.07 0.10 2.99 71.23 0.21 0.32 16 25 O -0.55 -0.41 10.11 -148.98 -1.51 -1.92 16 26 Si 0.82 -3.32 31.10 68.60 2.13 -1.18 16 27 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.11 0.19 5.25 -2.39 -0.01 0.18 16 29 H 0.09 0.74 5.91 -2.39 -0.01 0.73 16 30 H 0.42 -2.44 7.60 -92.71 -0.70 -3.15 16 31 H 0.10 -0.94 8.14 -2.39 -0.02 -0.96 16 32 H 0.12 -1.39 8.12 -2.39 -0.02 -1.41 16 33 H 0.42 -2.68 8.84 -92.70 -0.82 -3.50 16 34 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 35 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 36 H 0.06 0.52 5.88 -2.39 -0.01 0.51 16 37 H 0.07 -0.21 8.14 -2.39 -0.02 -0.22 16 38 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 39 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 40 H 0.07 0.47 5.88 -2.39 -0.01 0.45 16 41 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 42 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 43 H 0.11 -0.32 8.14 -2.38 -0.02 -0.34 16 44 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 45 H 0.17 -1.22 7.45 -2.91 -0.02 -1.24 16 46 H 0.18 -1.59 6.85 -2.91 -0.02 -1.61 16 47 H 0.13 -0.40 7.96 -2.38 -0.02 -0.42 16 48 H 0.39 -1.48 8.31 -74.06 -0.62 -2.09 16 49 H -0.29 -0.42 7.11 99.48 0.71 0.29 16 50 H -0.30 -0.88 7.11 99.48 0.71 -0.17 16 Total: 0.00 -24.13 399.58 -0.97 -25.10 By element: Atomic # 1 Polarization: -12.16 SS G_CDS: -1.11 Total: -13.27 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: 6.91 Total: 14.67 kcal Atomic # 7 Polarization: -0.41 SS G_CDS: -7.01 Total: -7.43 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -1.89 Total: -17.89 kcal Atomic # 14 Polarization: -3.32 SS G_CDS: 2.13 Total: -1.18 kcal Total: -24.13 -0.97 -25.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941010_10803936.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.262 kcal (2) G-P(sol) polarization free energy of solvation -24.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds