Wall clock time and date at job start Sun Mar 7 2021 00:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35457 * 125.56548 * 2 1 4 4 C 1.50706 * 126.06365 * 359.97438 * 3 2 1 5 5 O 1.42896 * 109.47082 * 296.44859 * 4 3 2 6 6 Si 1.86301 * 109.47240 * 56.45182 * 4 3 2 7 7 C 1.39832 * 107.86715 * 180.02562 * 3 2 1 8 8 C 1.50701 * 126.45577 * 179.97438 * 7 3 2 9 9 C 1.37867 * 107.08589 * 359.97438 * 7 3 2 10 10 C 1.46677 * 126.23468 * 179.97438 * 9 7 3 11 11 O 1.21697 * 119.99881 * 0.02562 * 10 9 7 12 12 N 1.34773 * 120.00068 * 179.97438 * 10 9 7 13 13 C 1.46501 * 119.99949 * 179.97438 * 12 10 9 14 14 H 1.09000 * 112.91379 * 336.25699 * 13 12 10 15 15 C 1.53784 * 113.61255 * 107.50780 * 13 12 10 16 16 C 1.53783 * 87.08094 * 139.98218 * 15 13 12 17 17 H 1.09002 * 113.68951 * 220.00439 * 16 15 13 18 18 N 1.46502 * 113.61609 * 89.11643 * 16 15 13 19 19 C 1.34779 * 120.00181 * 107.22213 * 18 16 15 20 20 O 1.21514 * 119.99539 * 0.28154 * 19 18 16 21 21 O 1.34635 * 119.99986 * 180.27382 * 19 18 16 22 22 C 1.45201 * 116.99656 * 180.02562 * 21 19 18 23 23 C 1.53003 * 109.47119 * 60.00384 * 22 21 19 24 24 C 1.53002 * 109.46873 * 180.02562 * 22 21 19 25 25 C 1.53000 * 109.47408 * 300.00355 * 22 21 19 26 26 C 1.53776 * 87.07972 * 334.56656 * 16 15 13 27 27 N 1.35536 * 125.56731 * 180.35184 * 2 1 3 28 28 H 1.09001 * 109.47059 * 94.29074 * 1 2 3 29 29 H 1.09000 * 109.46756 * 214.28691 * 1 2 3 30 30 H 1.08998 * 109.47120 * 334.28792 * 1 2 3 31 31 H 1.08999 * 109.46955 * 176.44923 * 4 3 2 32 32 H 0.96703 * 113.99493 * 60.00732 * 5 4 3 33 33 H 1.48503 * 110.00000 * 63.72631 * 6 4 3 34 34 H 1.48496 * 110.00257 * 185.04784 * 6 4 3 35 35 H 1.08995 * 109.47562 * 270.01654 * 8 7 3 36 36 H 1.08999 * 109.47076 * 30.01886 * 8 7 3 37 37 H 1.09007 * 109.46929 * 150.01455 * 8 7 3 38 38 H 0.96996 * 120.00647 * 0.02562 * 12 10 9 39 39 H 1.08997 * 113.61982 * 25.43124 * 15 13 12 40 40 H 1.09000 * 113.61455 * 254.52784 * 15 13 12 41 41 H 0.96999 * 119.99578 * 287.50819 * 18 16 15 42 42 H 1.09000 * 109.47101 * 59.99718 * 23 22 21 43 43 H 1.09001 * 109.47409 * 179.97438 * 23 22 21 44 44 H 1.09000 * 109.47145 * 299.99719 * 23 22 21 45 45 H 1.08997 * 109.47314 * 60.00476 * 24 22 21 46 46 H 1.09001 * 109.47337 * 180.02562 * 24 22 21 47 47 H 1.09000 * 109.47186 * 300.00184 * 24 22 21 48 48 H 1.09000 * 109.47174 * 60.00087 * 25 22 21 49 49 H 1.09001 * 109.46654 * 180.02562 * 25 22 21 50 50 H 1.08997 * 109.47136 * 299.99743 * 25 22 21 51 51 H 1.09001 * 113.61306 * 139.98412 * 26 16 15 52 52 H 1.08999 * 113.61459 * 270.79913 * 26 16 15 53 53 H 0.96996 * 125.67425 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 1.8199 2.5321 -0.0005 5 8 1.1007 2.7947 -1.2071 6 14 0.7024 2.8160 1.4628 7 6 3.6270 0.6768 -0.0006 8 6 4.8485 1.5593 -0.0014 9 6 3.6122 -0.7018 -0.0004 10 6 4.7860 -1.5814 -0.0013 11 8 5.9049 -1.1029 -0.0020 12 7 4.6253 -2.9195 -0.0004 13 6 5.7977 -3.7980 -0.0020 14 1 6.6878 -3.3173 -0.4079 15 6 6.0387 -4.5060 1.3418 16 6 6.4078 -5.7569 0.5269 17 1 6.0289 -6.6854 0.9540 18 7 7.8282 -5.8304 0.1756 19 6 8.6306 -6.7185 0.7953 20 8 8.1748 -7.4617 1.6417 21 8 9.9371 -6.7822 0.4763 22 6 10.7412 -7.7628 1.1836 23 6 10.1850 -9.1637 0.9206 24 6 12.1877 -7.6871 0.6909 25 6 10.6982 -7.4706 2.6848 26 6 5.5240 -5.1896 -0.5964 27 7 2.2953 -1.1025 -0.0068 28 1 -0.3633 -0.0769 -1.0248 29 1 -0.3633 -0.8491 0.5789 30 1 -0.3633 0.9259 0.4458 31 1 2.6788 3.2002 0.0632 32 1 0.3216 2.2353 -1.3302 33 1 1.4627 2.6337 2.7254 34 1 0.1308 4.1854 1.4074 35 1 5.1424 1.7722 -1.0291 36 1 4.6222 2.4934 0.5127 37 1 5.6646 1.0506 0.5120 38 1 3.7335 -3.3010 0.0005 39 1 5.1357 -4.6257 1.9404 40 1 6.8725 -4.0931 1.9095 41 1 8.1920 -5.2370 -0.5000 42 1 10.2156 -9.3719 -0.1489 43 1 10.7888 -9.8999 1.4511 44 1 9.1545 -9.2174 1.2718 45 1 12.5837 -6.6891 0.8786 46 1 12.7913 -8.4235 1.2215 47 1 12.2187 -7.8950 -0.3786 48 1 9.6677 -7.5242 3.0360 49 1 11.3022 -8.2065 3.2155 50 1 11.0945 -6.4726 2.8722 51 1 5.9422 -5.3286 -1.5933 52 1 4.4805 -5.4974 -0.5285 53 1 1.9834 -2.0209 -0.0128 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941010_12297754.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:20:36 Heat of formation + Delta-G solvation = -88.403367 kcal Electronic energy + Delta-G solvation = -33402.168741 eV Core-core repulsion = 28855.776170 eV Total energy + Delta-G solvation = -4546.392570 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.203 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.68790 -42.01175 -40.97062 -39.57665 -37.93787 -37.73565 -35.64531 -35.03416 -33.98671 -33.43102 -32.43857 -29.24659 -28.40114 -28.33885 -27.85500 -26.84148 -26.78137 -25.33643 -23.64998 -22.49117 -21.23362 -20.99290 -20.68849 -20.21937 -19.42344 -19.22252 -17.86636 -17.59477 -17.34559 -17.16189 -16.84098 -16.54468 -16.47181 -15.94012 -15.69466 -15.57322 -15.40393 -15.21774 -14.84703 -14.72890 -14.41947 -14.32727 -14.12027 -14.04115 -13.90994 -13.61253 -13.56778 -13.43266 -13.22025 -13.20262 -13.12462 -13.06858 -12.95469 -12.90595 -12.64379 -12.56702 -12.38352 -12.36338 -12.10012 -12.01646 -11.72110 -11.43689 -11.17339 -11.13266 -10.53964 -10.35130 -10.16020 -9.55258 -8.98474 -5.00007 0.34386 1.07953 1.22012 1.53315 1.66668 1.74931 1.94839 2.02574 2.14859 2.23359 3.04633 3.27520 3.44962 3.66966 3.70352 3.74799 3.78059 3.81717 3.88500 3.90762 3.94782 3.98613 4.03419 4.33642 4.40038 4.50397 4.52754 4.58157 4.60594 4.61160 4.64101 4.70865 4.72827 4.73153 4.78410 4.83149 4.84099 4.87860 4.89569 4.93184 4.93959 5.02436 5.09011 5.20803 5.21526 5.23729 5.27647 5.31709 5.44710 5.55680 5.71389 5.80342 6.29281 6.38811 6.57424 6.83495 7.08384 7.26381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.092 3.908 3 C -0.232 4.232 4 C -0.039 4.039 5 O -0.557 6.557 6 Si 0.768 3.232 7 C -0.082 4.082 8 C -0.091 4.091 9 C -0.078 4.078 10 C 0.588 3.412 11 O -0.569 6.569 12 N -0.703 5.703 13 C 0.121 3.879 14 H 0.099 0.901 15 C -0.162 4.162 16 C 0.137 3.863 17 H 0.109 0.891 18 N -0.688 5.688 19 C 0.647 3.353 20 O -0.590 6.590 21 O -0.371 6.371 22 C 0.127 3.873 23 C -0.179 4.179 24 C -0.138 4.138 25 C -0.180 4.180 26 C -0.128 4.128 27 N -0.514 5.514 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.390 0.610 33 H -0.302 1.302 34 H -0.292 1.292 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.413 0.587 39 H 0.112 0.888 40 H 0.055 0.945 41 H 0.415 0.585 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.099 0.901 47 H 0.070 0.930 48 H 0.064 0.936 49 H 0.088 0.912 50 H 0.058 0.942 51 H 0.094 0.906 52 H 0.133 0.867 53 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.851 -5.829 -2.000 9.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.028 4.028 3 C -0.238 4.238 4 C -0.148 4.148 5 O -0.365 6.365 6 Si 0.674 3.326 7 C -0.091 4.091 8 C -0.149 4.149 9 C -0.190 4.190 10 C 0.378 3.622 11 O -0.448 6.448 12 N -0.354 5.354 13 C 0.016 3.984 14 H 0.117 0.883 15 C -0.202 4.202 16 C 0.032 3.968 17 H 0.127 0.873 18 N -0.347 5.347 19 C 0.401 3.599 20 O -0.480 6.480 21 O -0.285 6.285 22 C 0.090 3.910 23 C -0.236 4.236 24 C -0.195 4.195 25 C -0.238 4.238 26 C -0.167 4.167 27 N -0.113 5.113 28 H 0.130 0.870 29 H 0.126 0.874 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.239 0.761 33 H -0.230 1.230 34 H -0.219 1.219 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.250 0.750 39 H 0.130 0.870 40 H 0.074 0.926 41 H 0.252 0.748 42 H 0.082 0.918 43 H 0.106 0.894 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.118 0.882 47 H 0.089 0.911 48 H 0.083 0.917 49 H 0.107 0.893 50 H 0.077 0.923 51 H 0.112 0.888 52 H 0.151 0.849 53 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -6.873 -5.218 -0.957 8.682 hybrid contribution 0.918 0.117 -0.254 0.959 sum -5.955 -5.101 -1.212 7.934 Atomic orbital electron populations 1.20879 0.83863 1.05094 1.05874 1.20779 0.95318 0.84652 1.02056 1.19576 0.92563 0.95709 1.15981 1.24453 1.00395 0.92966 0.97035 1.86501 1.44713 1.63987 1.41309 0.94324 0.83431 0.81911 0.72893 1.19975 0.95362 0.92009 1.01727 1.20293 0.94789 0.97912 1.01868 1.19844 0.84021 0.93419 1.21690 1.17233 0.87118 0.82376 0.75519 1.90819 1.25930 1.75915 1.52162 1.45633 1.10409 1.04489 1.74917 1.22621 0.89494 0.89286 0.96988 0.88288 1.24010 1.02843 0.95872 0.97505 1.21680 0.78075 0.99408 0.97628 0.87285 1.44432 1.08510 1.38580 1.43148 1.18293 0.81003 0.80523 0.80113 1.90903 1.76136 1.45253 1.35742 1.86319 1.19036 1.59150 1.64033 1.22376 0.90506 0.86433 0.91642 1.22467 1.03172 0.95283 1.02677 1.21898 0.90809 1.04005 1.02832 1.22477 1.03930 1.02773 0.94575 1.23725 1.02274 0.91849 0.98816 1.41661 1.03818 1.09374 1.56465 0.86954 0.87427 0.88473 0.88935 0.76066 1.22990 1.21913 0.91882 0.91737 0.91679 0.74981 0.86992 0.92617 0.74831 0.91831 0.89412 0.91595 0.91423 0.88200 0.91097 0.91682 0.89336 0.92263 0.88785 0.84908 0.72308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 1.55 8.94 71.24 0.64 2.19 16 2 C 0.09 -0.52 6.75 41.34 0.28 -0.24 16 3 C -0.23 -0.46 4.67 -20.12 -0.09 -0.56 16 4 C -0.04 -0.08 2.89 71.24 0.21 0.12 16 5 O -0.56 -0.92 12.88 -148.98 -1.92 -2.84 16 6 Si 0.77 -0.51 29.29 68.60 2.01 1.50 16 7 C -0.08 -0.58 6.21 -19.57 -0.12 -0.70 16 8 C -0.09 -0.85 9.53 71.24 0.68 -0.17 16 9 C -0.08 -0.23 7.06 40.35 0.28 0.05 16 10 C 0.59 2.91 7.79 86.45 0.67 3.58 16 11 O -0.57 -7.86 14.40 -4.34 -0.06 -7.93 16 12 N -0.70 2.85 5.35 -444.00 -2.38 0.48 16 13 C 0.12 -0.42 4.12 45.52 0.19 -0.23 16 14 H 0.10 0.12 7.47 -2.39 -0.02 0.11 16 15 C -0.16 0.38 7.68 31.12 0.24 0.62 16 16 C 0.14 -0.42 4.32 45.52 0.20 -0.22 16 17 H 0.11 -0.13 7.47 -2.39 -0.02 -0.14 16 18 N -0.69 -0.32 5.27 -567.60 -2.99 -3.31 16 19 C 0.65 4.40 8.06 129.79 1.05 5.45 16 20 O -0.59 -6.74 11.48 19.80 0.23 -6.51 16 21 O -0.37 -2.31 9.94 -55.44 -0.55 -2.86 16 22 C 0.13 0.44 1.13 -10.79 -0.01 0.43 16 23 C -0.18 -0.54 8.37 71.98 0.60 0.07 16 24 C -0.14 0.18 8.85 71.98 0.64 0.81 16 25 C -0.18 -0.72 8.37 71.98 0.60 -0.12 16 26 C -0.13 1.14 7.58 31.12 0.24 1.38 16 27 N -0.51 3.24 5.99 -171.93 -1.03 2.21 16 28 H 0.11 -2.09 8.14 -2.39 -0.02 -2.11 16 29 H 0.11 -2.08 8.14 -2.39 -0.02 -2.10 16 30 H 0.10 -1.60 4.06 -2.39 -0.01 -1.61 16 31 H 0.09 0.53 6.77 -2.39 -0.02 0.51 16 32 H 0.39 -3.18 7.37 -74.06 -0.55 -3.72 16 33 H -0.30 -2.13 7.11 99.48 0.71 -1.42 16 34 H -0.29 -1.72 7.11 99.48 0.71 -1.01 16 35 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.06 0.47 7.24 -2.39 -0.02 0.45 16 37 H 0.06 0.81 6.48 -2.38 -0.02 0.80 16 38 H 0.41 -4.85 7.86 -92.71 -0.73 -5.58 16 39 H 0.11 -0.58 8.14 -2.39 -0.02 -0.60 16 40 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 41 H 0.42 -1.10 8.81 -92.71 -0.82 -1.92 16 42 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 43 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 44 H 0.07 0.52 5.88 -2.39 -0.01 0.50 16 45 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 46 H 0.10 -0.48 8.14 -2.39 -0.02 -0.49 16 47 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 48 H 0.06 0.58 5.88 -2.39 -0.01 0.57 16 49 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 50 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 51 H 0.09 -0.88 8.14 -2.39 -0.02 -0.90 16 52 H 0.13 -1.88 8.12 -2.39 -0.02 -1.90 16 53 H 0.44 -6.36 8.19 -92.71 -0.76 -7.12 16 Total: 0.00 -31.45 418.55 -2.24 -33.70 By element: Atomic # 1 Polarization: -25.04 SS G_CDS: -1.83 Total: -26.87 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 6.28 Total: 12.44 kcal Atomic # 7 Polarization: 5.77 SS G_CDS: -6.40 Total: -0.63 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -2.30 Total: -20.13 kcal Atomic # 14 Polarization: -0.51 SS G_CDS: 2.01 Total: 1.50 kcal Total: -31.45 -2.24 -33.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941010_12297754.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.706 kcal (2) G-P(sol) polarization free energy of solvation -31.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds