Wall clock time and date at job start Sun Mar 7 2021 00:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47402 * 2 1 4 4 C 1.53004 * 109.47554 * 240.00073 * 2 1 3 5 5 O 1.45202 * 109.47316 * 119.99929 * 2 1 3 6 6 C 1.34636 * 116.99439 * 59.99945 * 5 2 1 7 7 O 1.21511 * 120.00512 * 0.02562 * 6 5 2 8 8 N 1.34774 * 119.99620 * 180.02562 * 6 5 2 9 9 C 1.46506 * 120.00180 * 179.97438 * 8 6 5 10 10 H 1.09002 * 112.84500 * 23.80476 * 9 8 6 11 11 C 1.53780 * 113.61482 * 154.99697 * 9 8 6 12 12 C 1.53779 * 87.08101 * 89.11998 * 11 9 8 13 13 H 1.09005 * 113.61091 * 270.80229 * 12 11 9 14 14 N 1.46499 * 113.61610 * 139.98128 * 12 11 9 15 15 C 1.34776 * 119.99774 * 156.52850 * 14 12 11 16 16 O 1.21277 * 120.00572 * 359.97438 * 15 14 12 17 17 C 1.50701 * 119.99830 * 180.02562 * 15 14 12 18 18 C 1.50700 * 109.47413 * 180.02562 * 17 15 14 19 19 C 1.38230 * 120.00384 * 89.99546 * 18 17 15 20 20 C 1.38236 * 119.99877 * 179.97438 * 19 18 17 21 21 C 1.38237 * 120.00186 * 0.02562 * 20 19 18 22 22 C 1.50696 * 119.99946 * 179.97438 * 21 20 19 23 23 O 1.42903 * 109.47131 * 299.99276 * 22 21 20 24 24 Si 1.86305 * 109.47185 * 179.97438 * 22 21 20 25 25 C 1.38238 * 119.99882 * 0.25287 * 21 20 19 26 26 C 1.38234 * 119.99608 * 359.49427 * 25 21 20 27 27 C 1.53774 * 87.17400 * 25.38777 * 12 11 9 28 28 H 1.08998 * 109.47638 * 300.00260 * 1 2 3 29 29 H 1.09010 * 109.46908 * 60.00191 * 1 2 3 30 30 H 1.08997 * 109.47442 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47425 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47312 * 299.99896 * 3 2 1 33 33 H 1.09005 * 109.47058 * 59.99680 * 3 2 1 34 34 H 1.09005 * 109.46723 * 300.00580 * 4 2 1 35 35 H 1.09004 * 109.47179 * 59.99479 * 4 2 1 36 36 H 1.08990 * 109.47684 * 179.97438 * 4 2 1 37 37 H 0.97000 * 120.00495 * 359.97438 * 8 6 5 38 38 H 1.09000 * 113.61416 * 334.57104 * 11 9 8 39 39 H 1.09006 * 113.61517 * 203.66490 * 11 9 8 40 40 H 0.96993 * 120.00055 * 336.52810 * 14 12 11 41 41 H 1.09002 * 109.47350 * 59.99796 * 17 15 14 42 42 H 1.09009 * 109.46937 * 299.99867 * 17 15 14 43 43 H 1.08001 * 120.00057 * 359.97438 * 19 18 17 44 44 H 1.08001 * 119.99706 * 179.97438 * 20 19 18 45 45 H 1.08999 * 109.47358 * 59.99636 * 22 21 20 46 46 H 0.96700 * 114.00311 * 300.00591 * 23 22 21 47 47 H 1.48497 * 110.00233 * 179.97438 * 24 22 21 48 48 H 1.48492 * 109.99800 * 301.31995 * 24 22 21 49 49 H 1.07996 * 119.99447 * 179.72715 * 25 21 20 50 50 H 1.08003 * 119.99541 * 180.25019 * 26 25 21 51 51 H 1.09000 * 113.61515 * 89.15866 * 27 12 11 52 52 H 1.08997 * 113.61721 * 220.06069 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5035 8 7 2.0672 -2.6654 2.4171 9 6 1.6731 -4.0666 2.5836 10 1 1.4208 -4.5503 1.6399 11 6 2.6460 -4.8810 3.4525 12 6 1.8051 -4.4451 4.6640 13 1 2.1354 -3.5068 5.1097 14 7 1.6078 -5.5068 5.6539 15 6 1.3280 -5.1911 6.9340 16 8 1.2401 -4.0281 7.2665 17 6 1.1255 -6.2833 7.9525 18 6 0.8271 -5.6686 9.2957 19 6 -0.4799 -5.4044 9.6599 20 6 -0.7536 -4.8411 10.8923 21 6 0.2798 -4.5414 11.7601 22 6 -0.0186 -3.9268 13.1033 23 8 -0.6866 -2.6772 12.9175 24 14 1.5754 -3.6481 14.0266 25 6 1.5873 -4.8003 11.3935 26 6 1.8606 -5.3684 10.1633 27 6 0.6256 -4.2832 3.6908 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1393 36 1 3.1300 -0.7208 -1.2495 37 1 2.6268 -2.2366 3.0833 38 1 3.6612 -4.4844 3.4602 39 1 2.6107 -5.9533 3.2597 40 1 1.6784 -6.4370 5.3882 41 1 2.0300 -6.8876 8.0219 42 1 0.2899 -6.9136 7.6480 43 1 -1.2873 -5.6382 8.9817 44 1 -1.7748 -4.6344 11.1766 45 1 -0.6574 -4.5986 13.6765 46 1 -0.1753 -2.0289 12.4142 47 1 1.2949 -3.0417 15.3528 48 1 2.2946 -4.9358 14.1983 49 1 2.3949 -4.5620 12.0698 50 1 2.8818 -5.5744 9.8785 51 1 0.0369 -5.1916 3.5632 52 1 0.0121 -3.4047 3.8907 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941010_12335836.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:20:49 Heat of formation + Delta-G solvation = -98.429839 kcal Electronic energy + Delta-G solvation = -32035.954812 eV Core-core repulsion = 27581.864850 eV Total energy + Delta-G solvation = -4454.089961 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 363.192 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.01109 -41.28435 -40.53432 -39.55506 -37.93582 -37.60108 -35.53698 -34.86896 -34.05517 -33.12631 -31.92927 -29.75731 -28.38666 -28.32093 -26.78413 -26.41291 -25.19119 -23.80715 -23.58845 -22.25360 -21.41436 -21.10707 -20.59352 -19.34846 -18.46064 -18.01685 -17.82933 -17.44017 -17.19629 -16.93353 -16.64946 -16.44027 -16.27922 -15.99770 -15.70237 -15.50672 -15.41827 -15.07585 -14.84396 -14.67330 -14.49262 -14.36288 -14.05909 -13.94548 -13.54692 -13.43707 -13.32966 -13.17868 -13.08608 -12.97064 -12.93323 -12.88851 -12.75208 -12.54249 -12.34504 -12.26259 -11.98284 -11.93618 -11.70704 -11.64514 -11.41951 -11.15139 -10.93998 -10.45591 -10.28189 -9.98128 -9.87276 -9.59534 -5.01305 0.24651 0.45802 1.10467 1.29967 1.60097 1.65375 1.69949 1.92066 2.22093 2.80898 3.07519 3.34770 3.49211 3.51115 3.63923 3.72054 3.77287 3.80394 3.83866 3.92406 3.92662 3.99999 4.05519 4.08070 4.37448 4.43215 4.46491 4.48609 4.55631 4.59569 4.63859 4.65542 4.70757 4.72886 4.74736 4.78968 4.81136 4.85762 4.86706 4.96360 4.98288 5.03812 5.09282 5.12083 5.25185 5.27412 5.37087 5.38527 5.52878 5.53973 5.59814 5.61908 6.02495 6.32385 6.60908 6.70710 7.28928 7.31896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.179 4.179 5 O -0.370 6.370 6 C 0.647 3.353 7 O -0.591 6.591 8 N -0.687 5.687 9 C 0.134 3.866 10 H 0.105 0.895 11 C -0.128 4.128 12 C 0.122 3.878 13 H 0.096 0.904 14 N -0.708 5.708 15 C 0.513 3.487 16 O -0.578 6.578 17 C -0.099 4.099 18 C -0.072 4.072 19 C -0.117 4.117 20 C -0.109 4.109 21 C -0.129 4.129 22 C -0.078 4.078 23 O -0.558 6.558 24 Si 0.775 3.225 25 C -0.124 4.124 26 C -0.109 4.109 27 C -0.163 4.163 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.415 0.585 38 H 0.093 0.907 39 H 0.131 0.869 40 H 0.420 0.580 41 H 0.134 0.866 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.120 0.880 45 H 0.105 0.895 46 H 0.393 0.607 47 H -0.299 1.299 48 H -0.281 1.281 49 H 0.141 0.859 50 H 0.144 0.856 51 H 0.110 0.890 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.174 -3.433 -3.151 6.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.236 4.236 5 O -0.285 6.285 6 C 0.400 3.600 7 O -0.482 6.482 8 N -0.346 5.346 9 C 0.029 3.971 10 H 0.123 0.877 11 C -0.167 4.167 12 C 0.017 3.983 13 H 0.114 0.886 14 N -0.360 5.360 15 C 0.301 3.699 16 O -0.457 6.457 17 C -0.139 4.139 18 C -0.072 4.072 19 C -0.135 4.135 20 C -0.127 4.127 21 C -0.129 4.129 22 C -0.187 4.187 23 O -0.366 6.366 24 Si 0.681 3.319 25 C -0.141 4.141 26 C -0.127 4.127 27 C -0.203 4.203 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.118 0.882 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.252 0.748 38 H 0.111 0.889 39 H 0.149 0.851 40 H 0.258 0.742 41 H 0.152 0.848 42 H 0.145 0.855 43 H 0.148 0.852 44 H 0.138 0.862 45 H 0.122 0.878 46 H 0.243 0.757 47 H -0.227 1.227 48 H -0.207 1.207 49 H 0.159 0.841 50 H 0.161 0.839 51 H 0.129 0.871 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.778 -3.284 -2.344 6.254 hybrid contribution -0.762 -0.380 0.131 0.862 sum 4.016 -3.664 -2.213 5.869 Atomic orbital electron populations 1.22476 0.94141 1.03694 1.03450 1.22370 0.94396 0.92616 0.81558 1.21897 1.02523 0.90900 1.04204 1.22469 1.01705 1.02268 0.97186 1.86317 1.71533 1.23274 1.47374 1.18302 0.78542 0.80791 0.82346 1.90902 1.42041 1.70866 1.44353 1.44427 1.54896 1.12202 1.23058 1.21752 0.96782 0.79169 0.99395 0.87663 1.23706 0.98833 1.02534 0.91615 1.22497 0.96318 0.92342 0.87159 0.88635 1.45853 1.71606 1.10761 1.07766 1.21010 0.75094 0.90200 0.83580 1.90743 1.51748 1.22633 1.80561 1.20773 1.07206 0.96538 0.89338 1.19603 0.93263 0.98921 0.95423 1.21231 0.96881 0.98941 0.96451 1.21070 0.99245 0.98240 0.94184 1.20405 0.94019 1.01254 0.97218 1.25236 1.08548 0.87113 0.97830 1.86446 1.47958 1.23762 1.78434 0.93589 0.77301 0.82914 0.78115 1.21174 0.95528 0.99896 0.97514 1.21245 0.99799 0.98182 0.93463 1.24024 0.97621 1.03078 0.95596 0.92202 0.89364 0.91742 0.91070 0.88238 0.91367 0.91653 0.89441 0.91808 0.74808 0.88869 0.85082 0.74191 0.84788 0.85499 0.85234 0.86164 0.87780 0.75689 1.22666 1.20750 0.84137 0.83860 0.87142 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.69 8.37 71.98 0.60 -0.09 16 2 C 0.13 0.41 1.13 -10.79 -0.01 0.40 16 3 C -0.14 0.22 8.85 71.98 0.64 0.86 16 4 C -0.18 -0.53 8.37 71.98 0.60 0.08 16 5 O -0.37 -2.21 9.94 -55.45 -0.55 -2.76 16 6 C 0.65 4.34 8.06 129.79 1.05 5.38 16 7 O -0.59 -6.84 11.48 19.81 0.23 -6.61 16 8 N -0.69 -0.19 5.26 -567.32 -2.99 -3.17 16 9 C 0.13 -0.41 4.33 45.57 0.20 -0.21 16 10 H 0.11 -0.07 7.46 -2.39 -0.02 -0.08 16 11 C -0.13 1.19 7.58 31.12 0.24 1.43 16 12 C 0.12 -0.58 4.09 45.51 0.19 -0.40 16 13 H 0.10 -0.01 7.50 -2.38 -0.02 -0.03 16 14 N -0.71 4.94 5.36 -440.05 -2.36 2.58 16 15 C 0.51 -0.43 7.82 87.66 0.69 0.25 16 16 O -0.58 -5.55 15.65 -3.02 -0.05 -5.60 16 17 C -0.10 0.62 5.83 29.10 0.17 0.79 16 18 C -0.07 -0.05 4.37 -19.87 -0.09 -0.13 16 19 C -0.12 -0.35 9.70 22.27 0.22 -0.14 16 20 C -0.11 -0.53 9.61 22.27 0.21 -0.32 16 21 C -0.13 -0.45 5.39 -19.87 -0.11 -0.56 16 22 C -0.08 -0.21 2.82 71.23 0.20 0.00 16 23 O -0.56 -2.25 12.77 -148.98 -1.90 -4.15 16 24 Si 0.77 0.00 29.79 68.60 2.04 2.04 16 25 C -0.12 -0.17 8.67 22.27 0.19 0.03 16 26 C -0.11 -0.05 9.70 22.27 0.22 0.16 16 27 C -0.16 0.44 7.69 31.18 0.24 0.68 16 28 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.09 0.02 8.14 -2.38 -0.02 0.00 16 30 H 0.06 0.58 5.88 -2.39 -0.01 0.56 16 31 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 33 H 0.07 -0.10 8.14 -2.38 -0.02 -0.11 16 34 H 0.06 0.52 5.88 -2.38 -0.01 0.51 16 35 H 0.09 -0.04 8.14 -2.38 -0.02 -0.06 16 36 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.42 -1.30 8.81 -92.71 -0.82 -2.11 16 38 H 0.09 -0.92 8.14 -2.39 -0.02 -0.94 16 39 H 0.13 -1.82 8.11 -2.38 -0.02 -1.84 16 40 H 0.42 -5.88 8.71 -92.71 -0.81 -6.69 16 41 H 0.13 -1.60 8.09 -2.39 -0.02 -1.62 16 42 H 0.13 -1.35 8.09 -2.38 -0.02 -1.37 16 43 H 0.13 0.03 8.06 -2.91 -0.02 0.00 16 44 H 0.12 0.57 8.06 -2.91 -0.02 0.54 16 45 H 0.10 0.38 7.96 -2.39 -0.02 0.36 16 46 H 0.39 -1.27 8.70 -74.06 -0.64 -1.91 16 47 H -0.30 -2.14 7.11 99.48 0.71 -1.43 16 48 H -0.28 -1.03 7.11 99.48 0.71 -0.33 16 49 H 0.14 -0.39 4.88 -2.91 -0.01 -0.40 16 50 H 0.14 -0.59 8.06 -2.91 -0.02 -0.62 16 51 H 0.11 -0.58 8.14 -2.39 -0.02 -0.60 16 52 H 0.05 0.15 8.14 -2.39 -0.02 0.14 16 Total: 0.00 -26.46 422.53 -1.41 -27.88 By element: Atomic # 1 Polarization: -17.14 SS G_CDS: -1.27 Total: -18.41 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 5.44 Total: 8.22 kcal Atomic # 7 Polarization: 4.75 SS G_CDS: -5.35 Total: -0.59 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -2.27 Total: -19.12 kcal Atomic # 14 Polarization: 0.00 SS G_CDS: 2.04 Total: 2.04 kcal Total: -26.46 -1.41 -27.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941010_12335836.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.554 kcal (2) G-P(sol) polarization free energy of solvation -26.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds