Wall clock time and date at job start Sun Mar 7 2021 00:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47103 * 2 1 4 4 C 1.53002 * 109.47497 * 240.00350 * 2 1 3 5 5 O 1.45195 * 109.47224 * 120.00099 * 2 1 3 6 6 C 1.34638 * 117.00135 * 60.00489 * 5 2 1 7 7 O 1.21513 * 119.99867 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00235 * 180.02562 * 6 5 2 9 9 C 1.46498 * 119.99828 * 180.27525 * 8 6 5 10 10 H 1.09002 * 112.85447 * 23.52517 * 9 8 6 11 11 C 1.53782 * 113.61542 * 154.72141 * 9 8 6 12 12 C 1.53779 * 87.08025 * 139.97648 * 11 9 8 13 13 H 1.08996 * 113.61460 * 219.93296 * 12 11 9 14 14 N 1.46504 * 113.61349 * 89.11890 * 12 11 9 15 15 C 1.34769 * 120.00154 * 154.99680 * 14 12 11 16 16 O 1.21598 * 120.00246 * 359.97438 * 15 14 12 17 17 C 1.47580 * 120.00328 * 180.02562 * 15 14 12 18 18 C 1.40210 * 119.82772 * 359.97438 * 17 15 14 19 19 C 1.36235 * 120.37596 * 180.02562 * 18 17 15 20 20 C 1.39875 * 119.96152 * 359.97438 * 19 18 17 21 21 C 1.46254 * 133.84189 * 179.97438 * 20 19 18 22 22 C 1.50704 * 126.48660 * 359.96632 * 21 20 19 23 23 O 1.42894 * 109.46632 * 74.99557 * 22 21 20 24 24 Si 1.86294 * 109.47388 * 195.00037 * 22 21 20 25 25 C 1.34454 * 107.03717 * 180.02562 * 21 20 19 26 26 N 1.36569 * 109.98205 * 0.02562 * 25 21 20 27 27 C 1.37826 * 109.85957 * 359.97438 * 26 25 21 28 28 C 1.38654 * 133.37537 * 180.32750 * 27 26 25 29 29 C 1.53777 * 87.08273 * 334.57004 * 12 11 9 30 30 H 1.09001 * 109.47095 * 299.99865 * 1 2 3 31 31 H 1.09006 * 109.47298 * 59.99979 * 1 2 3 32 32 H 1.09003 * 109.46856 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47042 * 179.97438 * 3 2 1 34 34 H 1.08992 * 109.47205 * 300.00164 * 3 2 1 35 35 H 1.09001 * 109.46587 * 60.00389 * 3 2 1 36 36 H 1.09003 * 109.46840 * 300.00288 * 4 2 1 37 37 H 1.09006 * 109.47115 * 59.99560 * 4 2 1 38 38 H 1.08995 * 109.47291 * 179.97438 * 4 2 1 39 39 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 40 40 H 1.08997 * 113.61719 * 254.52880 * 11 9 8 41 41 H 1.08999 * 113.60977 * 25.42830 * 11 9 8 42 42 H 0.96996 * 119.99677 * 335.00046 * 14 12 11 43 43 H 1.07992 * 119.81263 * 0.02562 * 18 17 15 44 44 H 1.08001 * 120.01686 * 180.02562 * 19 18 17 45 45 H 1.09002 * 109.46686 * 315.00013 * 22 21 20 46 46 H 0.96708 * 113.99649 * 179.97438 * 23 22 21 47 47 H 1.48500 * 109.99974 * 178.68143 * 24 22 21 48 48 H 1.48503 * 109.99921 * 300.00101 * 24 22 21 49 49 H 1.08001 * 125.01418 * 179.97438 * 25 21 20 50 50 H 0.97010 * 125.06918 * 179.97438 * 26 25 21 51 51 H 1.07992 * 120.16960 * 359.91000 * 28 27 26 52 52 H 1.09001 * 113.61338 * 270.87786 * 29 12 11 53 53 H 1.09000 * 113.61355 * 139.98049 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3382 7 8 0.9510 -2.5095 0.5039 8 7 2.0673 -2.6655 2.4170 9 6 1.6788 -4.0686 2.5801 10 1 1.4264 -4.5505 1.6355 11 6 2.6563 -4.8820 3.4447 12 6 1.4222 -5.5609 4.0619 13 1 1.5048 -5.7231 5.1366 14 7 0.9872 -6.7578 3.3378 15 6 0.2920 -7.7180 3.9790 16 8 0.0262 -7.5910 5.1588 17 6 -0.1457 -8.9240 3.2497 18 6 0.1632 -9.0670 1.8895 19 6 -0.2358 -10.1754 1.2053 20 6 -0.9574 -11.1787 1.8605 21 6 -1.5233 -12.4596 1.4386 22 6 -1.4542 -13.0583 0.0573 23 8 -0.1389 -13.5655 -0.1767 24 14 -2.6888 -14.4467 -0.0803 25 6 -2.1180 -13.0015 2.5158 26 7 -1.9794 -12.1722 3.5920 27 6 -1.2735 -11.0460 3.2274 28 6 -0.8587 -9.9173 3.9175 29 6 0.6352 -4.2941 3.6869 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6767 -1.7488 -1.2493 37 1 1.6767 -0.2073 -2.1393 38 1 3.1300 -0.7207 -1.2495 39 1 2.6269 -2.2366 3.0832 40 1 3.2865 -5.5608 2.8702 41 1 3.2211 -4.2758 4.1530 42 1 1.1996 -6.8593 2.3968 43 1 0.7205 -8.2941 1.3814 44 1 0.0057 -10.2798 0.1578 45 1 -1.6852 -12.2921 -0.6827 46 1 -0.0215 -13.9668 -1.0487 47 1 -2.6529 -15.0246 -1.4478 48 1 -2.3848 -15.4979 0.9236 49 1 -2.6305 -13.9521 2.5281 50 1 -2.3262 -12.3494 4.4805 51 1 -1.0914 -9.8062 4.9662 52 1 0.6475 -3.5272 4.4614 53 1 -0.3661 -4.4983 3.3079 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941010_12335838.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:20:53 Heat of formation + Delta-G solvation = -57.435223 kcal Electronic energy + Delta-G solvation = -35256.504322 eV Core-core repulsion = 30482.313828 eV Total energy + Delta-G solvation = -4774.190493 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.188 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.46940 -41.95709 -41.25407 -39.78697 -38.02632 -37.83739 -37.51174 -35.59190 -34.85451 -33.41418 -33.31417 -30.79259 -30.51872 -28.36977 -28.30529 -26.80007 -26.60331 -26.16994 -24.61171 -23.65406 -23.11562 -21.78843 -21.18720 -20.65803 -20.51856 -19.35996 -19.14592 -18.44326 -18.25931 -17.85601 -17.35143 -17.18228 -17.14041 -16.57928 -16.12079 -16.08024 -15.84728 -15.64249 -15.39076 -15.33506 -15.02432 -14.96956 -14.78222 -14.62135 -14.53261 -14.38738 -13.90137 -13.85616 -13.55914 -13.36553 -13.17501 -13.15392 -13.11987 -12.91241 -12.86741 -12.66941 -12.61402 -12.53539 -12.30155 -12.18818 -11.95890 -11.86828 -11.65974 -11.39308 -11.17587 -11.09914 -10.78007 -10.33397 -10.28252 -10.09187 -9.37160 -8.80413 -4.85268 -0.33290 0.36807 1.17701 1.34754 1.39022 1.65347 1.73153 1.85660 1.86932 2.00868 2.21655 2.84968 3.14580 3.33866 3.47855 3.55630 3.58796 3.71230 3.74021 3.78935 3.81479 3.83755 3.94250 3.96697 4.04314 4.09878 4.28649 4.36943 4.43140 4.50874 4.55635 4.57828 4.60912 4.66520 4.70848 4.75227 4.76263 4.80612 4.83868 4.85140 4.87368 4.94173 4.97088 4.97680 5.11474 5.20479 5.25171 5.26841 5.34998 5.40785 5.47672 5.55068 5.59852 5.60602 5.97226 6.38968 6.42785 6.51905 6.70168 7.10365 7.34045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.179 4.179 5 O -0.370 6.370 6 C 0.642 3.358 7 O -0.593 6.593 8 N -0.688 5.688 9 C 0.139 3.861 10 H 0.109 0.891 11 C -0.131 4.131 12 C 0.120 3.880 13 H 0.102 0.898 14 N -0.698 5.698 15 C 0.567 3.433 16 O -0.577 6.577 17 C -0.137 4.137 18 C -0.108 4.108 19 C -0.083 4.083 20 C -0.081 4.081 21 C -0.191 4.191 22 C -0.051 4.051 23 O -0.562 6.562 24 Si 0.769 3.231 25 C 0.089 3.911 26 N -0.576 5.576 27 C 0.067 3.933 28 C -0.064 4.064 29 C -0.162 4.162 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.419 0.581 40 H 0.097 0.903 41 H 0.125 0.875 42 H 0.414 0.586 43 H 0.151 0.849 44 H 0.141 0.859 45 H 0.083 0.917 46 H 0.391 0.609 47 H -0.290 1.290 48 H -0.285 1.285 49 H 0.204 0.796 50 H 0.435 0.565 51 H 0.131 0.869 52 H 0.106 0.894 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.242 0.551 -2.351 2.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.236 4.236 5 O -0.284 6.284 6 C 0.396 3.604 7 O -0.484 6.484 8 N -0.348 5.348 9 C 0.035 3.965 10 H 0.127 0.873 11 C -0.170 4.170 12 C 0.013 3.987 13 H 0.120 0.880 14 N -0.349 5.349 15 C 0.356 3.644 16 O -0.458 6.458 17 C -0.141 4.141 18 C -0.127 4.127 19 C -0.101 4.101 20 C -0.086 4.086 21 C -0.198 4.198 22 C -0.160 4.160 23 O -0.371 6.371 24 Si 0.673 3.327 25 C -0.040 4.040 26 N -0.180 5.180 27 C -0.040 4.040 28 C -0.086 4.086 29 C -0.202 4.202 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.256 0.744 40 H 0.116 0.884 41 H 0.143 0.857 42 H 0.252 0.748 43 H 0.169 0.831 44 H 0.158 0.842 45 H 0.101 0.899 46 H 0.241 0.759 47 H -0.217 1.217 48 H -0.212 1.212 49 H 0.220 0.780 50 H 0.275 0.725 51 H 0.149 0.851 52 H 0.124 0.876 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.846 -0.166 -1.413 1.655 hybrid contribution 1.033 -0.194 -0.379 1.117 sum 0.188 -0.360 -1.792 1.837 Atomic orbital electron populations 1.22473 0.94156 1.03676 1.03418 1.22343 0.94365 0.92594 0.81614 1.21891 1.02483 0.90941 1.04184 1.22468 1.01654 1.02285 0.97241 1.86313 1.71506 1.23380 1.47230 1.18445 0.78638 0.80791 0.82520 1.90902 1.42115 1.70922 1.44488 1.44734 1.55033 1.12040 1.22962 1.22689 0.96247 0.78795 0.98795 0.87267 1.23736 0.95948 0.98226 0.99079 1.21674 0.95719 0.83412 0.97847 0.87955 1.45495 1.55788 1.19084 1.14553 1.18306 0.77109 0.82959 0.85995 1.90768 1.57633 1.80101 1.17319 1.19454 1.04481 0.95215 0.94990 1.20900 1.00743 0.98790 0.92279 1.20397 0.96913 0.92164 1.00655 1.19557 1.00483 0.95899 0.92703 1.19804 1.08573 0.95669 0.95723 1.24325 0.91278 1.05758 0.94622 1.86592 1.30184 1.79681 1.40686 0.94201 0.85272 0.75603 0.77609 1.22201 1.00314 0.96297 0.85234 1.41759 1.47691 1.15747 1.12779 1.18134 1.00595 0.90711 0.94536 1.20132 0.97638 0.90920 0.99888 1.23998 0.98935 0.98037 0.99273 0.92096 0.89525 0.91765 0.91120 0.88377 0.91275 0.91651 0.89569 0.91876 0.74381 0.88407 0.85688 0.74793 0.83101 0.84150 0.89912 0.75942 1.21733 1.21235 0.77963 0.72458 0.85091 0.87595 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.58 8.37 71.98 0.60 0.02 16 2 C 0.13 0.33 1.13 -10.79 -0.01 0.32 16 3 C -0.14 0.31 8.85 71.98 0.64 0.95 16 4 C -0.18 -0.47 8.37 71.98 0.60 0.14 16 5 O -0.37 -1.80 9.94 -55.48 -0.55 -2.35 16 6 C 0.64 3.68 8.06 129.79 1.05 4.72 16 7 O -0.59 -6.48 11.48 19.80 0.23 -6.26 16 8 N -0.69 0.76 5.36 -567.61 -3.04 -2.28 16 9 C 0.14 -0.36 4.12 45.52 0.19 -0.18 16 10 H 0.11 -0.02 7.46 -2.39 -0.02 -0.04 16 11 C -0.13 0.92 7.58 31.12 0.24 1.15 16 12 C 0.12 -0.18 4.32 45.52 0.20 0.02 16 13 H 0.10 0.17 7.46 -2.39 -0.02 0.15 16 14 N -0.70 -0.05 5.21 -443.16 -2.31 -2.36 16 15 C 0.57 3.99 7.76 86.71 0.67 4.66 16 16 O -0.58 -8.39 15.91 -4.02 -0.06 -8.45 16 17 C -0.14 -0.76 5.87 -20.07 -0.12 -0.88 16 18 C -0.11 -0.17 9.46 22.28 0.21 0.04 16 19 C -0.08 -0.27 10.03 22.20 0.22 -0.05 16 20 C -0.08 -0.45 6.35 -20.14 -0.13 -0.58 16 21 C -0.19 -0.50 5.61 -18.64 -0.10 -0.60 16 22 C -0.05 0.03 3.05 71.24 0.22 0.24 16 23 O -0.56 -1.50 12.86 -148.98 -1.92 -3.41 16 24 Si 0.77 -2.99 30.79 68.60 2.11 -0.88 16 25 C 0.09 -0.11 10.43 83.09 0.87 0.75 16 26 N -0.58 0.41 6.07 -187.71 -1.14 -0.73 16 27 C 0.07 0.33 7.26 38.96 0.28 0.61 16 28 C -0.06 -0.41 9.61 22.63 0.22 -0.20 16 29 C -0.16 0.17 7.68 31.12 0.24 0.41 16 30 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.09 -0.01 8.14 -2.38 -0.02 -0.03 16 32 H 0.06 0.55 5.88 -2.39 -0.01 0.53 16 33 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 34 H 0.10 -0.53 8.14 -2.39 -0.02 -0.55 16 35 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 36 H 0.06 0.50 5.88 -2.39 -0.01 0.48 16 37 H 0.09 -0.06 8.14 -2.38 -0.02 -0.08 16 38 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.42 -2.46 8.84 -92.71 -0.82 -3.28 16 40 H 0.10 -0.83 8.14 -2.39 -0.02 -0.84 16 41 H 0.12 -1.30 8.12 -2.39 -0.02 -1.32 16 42 H 0.41 -1.98 6.69 -92.71 -0.62 -2.60 16 43 H 0.15 -0.74 6.36 -2.91 -0.02 -0.76 16 44 H 0.14 0.01 8.06 -2.91 -0.02 -0.02 16 45 H 0.08 -0.26 7.96 -2.39 -0.02 -0.28 16 46 H 0.39 -2.10 8.74 -74.05 -0.65 -2.75 16 47 H -0.29 -0.32 7.11 99.48 0.71 0.38 16 48 H -0.29 -0.34 7.04 99.48 0.70 0.36 16 49 H 0.20 -1.55 6.30 -2.91 -0.02 -1.57 16 50 H 0.43 -2.88 8.96 -92.70 -0.83 -3.71 16 51 H 0.13 0.85 7.62 -2.91 -0.02 0.83 16 52 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 53 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 Total: 0.00 -28.00 431.42 -2.50 -30.49 By element: Atomic # 1 Polarization: -13.45 SS G_CDS: -1.89 Total: -15.34 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 6.08 Total: 11.57 kcal Atomic # 7 Polarization: 1.12 SS G_CDS: -6.49 Total: -5.37 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -2.30 Total: -20.47 kcal Atomic # 14 Polarization: -2.99 SS G_CDS: 2.11 Total: -0.88 kcal Total: -28.00 -2.50 -30.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941010_12335838.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.940 kcal (2) G-P(sol) polarization free energy of solvation -28.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds