Wall clock time and date at job start Sun Mar 7 2021 00:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35650 * 117.00091 * 2 1 4 4 C 1.40142 * 120.14987 * 179.97438 * 3 2 1 5 5 C 1.47531 * 120.18858 * 359.97438 * 4 3 2 6 6 O 1.21590 * 120.00364 * 359.72030 * 5 4 3 7 7 N 1.34786 * 120.00027 * 179.72242 * 5 4 3 8 8 C 1.46494 * 119.99771 * 179.97438 * 7 5 4 9 9 H 1.08997 * 112.85458 * 336.19084 * 8 7 5 10 10 C 1.53782 * 113.61147 * 107.50577 * 8 7 5 11 11 C 1.53785 * 87.08211 * 139.97710 * 10 8 7 12 12 H 1.08999 * 113.69155 * 220.00544 * 11 10 8 13 13 N 1.46507 * 113.61434 * 89.11237 * 11 10 8 14 14 C 1.34773 * 119.99575 * 107.50661 * 13 11 10 15 15 O 1.21513 * 120.00527 * 359.97438 * 14 13 11 16 16 O 1.34639 * 119.99616 * 179.97438 * 14 13 11 17 17 C 1.45206 * 116.99892 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.46989 * 59.99951 * 17 16 14 19 19 C 1.52999 * 109.46777 * 179.97438 * 17 16 14 20 20 C 1.52997 * 109.47147 * 299.99882 * 17 16 14 21 21 C 1.53781 * 87.08277 * 334.56797 * 11 10 8 22 22 C 1.39710 * 119.61695 * 179.72309 * 4 3 2 23 23 C 1.37786 * 119.90836 * 0.24986 * 22 4 3 24 24 C 1.50698 * 119.84808 * 179.97438 * 23 22 4 25 25 O 1.42900 * 109.47571 * 300.00302 * 24 23 22 26 26 Si 1.86300 * 109.47038 * 180.02562 * 24 23 22 27 27 C 1.38546 * 120.30231 * 359.97438 * 23 22 4 28 28 C 1.38056 * 120.38943 * 0.02562 * 27 23 22 29 29 H 1.08997 * 109.47515 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47023 * 300.00746 * 1 2 3 31 31 H 1.09003 * 109.46856 * 59.99907 * 1 2 3 32 32 H 0.96994 * 119.99341 * 0.02562 * 7 5 4 33 33 H 1.08992 * 113.61879 * 25.43300 * 10 8 7 34 34 H 1.09000 * 113.61255 * 254.52066 * 10 8 7 35 35 H 0.96996 * 119.99762 * 287.50533 * 13 11 10 36 36 H 1.09000 * 109.47140 * 60.00134 * 18 17 16 37 37 H 1.09001 * 109.47230 * 179.97438 * 18 17 16 38 38 H 1.09001 * 109.47375 * 300.00116 * 18 17 16 39 39 H 1.09001 * 109.47362 * 60.00671 * 19 17 16 40 40 H 1.09002 * 109.46716 * 180.02562 * 19 17 16 41 41 H 1.09000 * 109.47486 * 299.99948 * 19 17 16 42 42 H 1.09001 * 109.46832 * 60.00119 * 20 17 16 43 43 H 1.09002 * 109.47153 * 179.97438 * 20 17 16 44 44 H 1.08996 * 109.46952 * 300.00100 * 20 17 16 45 45 H 1.09000 * 113.62067 * 139.98134 * 21 11 10 46 46 H 1.09008 * 113.61231 * 270.80482 * 21 11 10 47 47 H 1.07999 * 120.04190 * 180.22904 * 22 4 3 48 48 H 1.09001 * 109.46702 * 60.00615 * 24 23 22 49 49 H 0.96698 * 113.99645 * 300.00368 * 25 24 23 50 50 H 1.48502 * 110.00018 * 180.02562 * 26 24 23 51 51 H 1.48501 * 110.00016 * 301.31974 * 26 24 23 52 52 H 1.07998 * 119.80888 * 180.02562 * 27 23 22 53 53 H 1.07995 * 119.96284 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 3.4442 1.2856 0.0005 5 6 4.2550 0.0531 0.0017 6 8 3.7094 -1.0336 0.0073 7 7 5.6005 0.1315 -0.0035 8 6 6.4056 -1.0924 -0.0017 9 1 5.8719 -1.9495 0.4089 10 6 7.0933 -1.3791 -1.3470 11 6 8.3218 -1.8223 -0.5350 12 1 9.2704 -1.5018 -0.9657 13 7 8.3093 -3.2438 -0.1805 14 6 9.1487 -4.0993 -0.7968 15 8 9.9155 -3.6919 -1.6468 16 8 9.1376 -5.4056 -0.4707 17 6 10.0683 -6.2689 -1.1755 18 6 11.4996 -5.7932 -0.9188 19 6 9.9111 -7.7057 -0.6737 20 6 9.7752 -6.2174 -2.6763 21 6 7.8132 -0.9030 0.5880 22 6 4.0668 2.5363 -0.0053 23 6 3.3039 3.6836 -0.0064 24 6 3.9770 5.0319 -0.0122 25 8 4.7959 5.1606 1.1518 26 14 2.6828 6.3720 -0.0115 27 6 1.9208 3.6034 -0.0022 28 6 1.2925 2.3740 0.0036 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 6.0357 0.9984 -0.0075 33 1 7.2662 -0.4865 -1.9480 34 1 6.6284 -2.1874 -1.9115 35 1 7.6970 -3.5691 0.4978 36 1 11.7084 -5.8300 0.1504 37 1 12.1983 -6.4416 -1.4475 38 1 11.6118 -4.7695 -1.2759 39 1 8.8914 -8.0449 -0.8563 40 1 10.6101 -8.3537 -1.2025 41 1 10.1202 -7.7421 0.3955 42 1 9.8874 -5.1937 -3.0334 43 1 10.4741 -6.8652 -3.2054 44 1 8.7555 -6.5563 -2.8591 45 1 7.9293 -1.3267 1.5856 46 1 8.1839 0.1196 0.5167 47 1 5.1447 2.6036 -0.0087 48 1 4.5963 5.1249 -0.9043 49 1 4.3098 5.0878 1.9846 50 1 3.3338 7.7068 -0.0177 51 1 1.8043 6.2303 -1.2003 52 1 1.3305 4.5078 -0.0035 53 1 0.2140 2.3195 0.0064 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941010_12496546.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:21:37 Heat of formation + Delta-G solvation = -123.804224 kcal Electronic energy + Delta-G solvation = -35063.784822 eV Core-core repulsion = 30289.912353 eV Total energy + Delta-G solvation = -4773.872469 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.192 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.07213 -41.74104 -40.77982 -39.47067 -39.17198 -37.90503 -37.08622 -35.57090 -34.93999 -33.54589 -32.28805 -31.76134 -28.55057 -28.39429 -28.32863 -26.82036 -26.46611 -26.13628 -24.78300 -23.61338 -22.51697 -21.59265 -21.14406 -20.71049 -19.43230 -19.35923 -18.34085 -18.15213 -17.75815 -17.37798 -17.18671 -16.88857 -16.85544 -16.49845 -16.19696 -15.88803 -15.87221 -15.84061 -15.58629 -15.40974 -14.95816 -14.76368 -14.54127 -14.50589 -14.36979 -13.96987 -13.62432 -13.57895 -13.41883 -13.37728 -13.16522 -13.12838 -13.06577 -12.94460 -12.89671 -12.55748 -12.43193 -12.35453 -12.08865 -12.04489 -11.97997 -11.78503 -11.68280 -11.42809 -11.16094 -11.00257 -10.38476 -10.32479 -10.23976 -9.98945 -9.27797 -4.97102 -0.26320 0.22373 1.08767 1.35014 1.65237 1.67548 1.76865 2.00801 2.11020 2.27284 2.68096 3.05798 3.30261 3.47476 3.50097 3.58580 3.68418 3.71303 3.76214 3.77494 3.81774 3.91623 3.94627 4.01170 4.16031 4.30193 4.35518 4.39163 4.42703 4.52760 4.57613 4.58861 4.62505 4.65742 4.68049 4.71809 4.73874 4.77724 4.79489 4.84586 4.85030 4.92242 4.93966 4.94801 5.09798 5.12093 5.24443 5.25431 5.28432 5.33867 5.48859 5.56971 5.58295 6.29789 6.31346 6.52179 6.82811 7.21275 7.27533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.313 6.313 3 C 0.170 3.830 4 C -0.198 4.198 5 C 0.557 3.443 6 O -0.565 6.565 7 N -0.705 5.705 8 C 0.121 3.879 9 H 0.099 0.901 10 C -0.163 4.163 11 C 0.138 3.862 12 H 0.108 0.892 13 N -0.687 5.687 14 C 0.647 3.353 15 O -0.590 6.590 16 O -0.370 6.370 17 C 0.126 3.874 18 C -0.179 4.179 19 C -0.138 4.138 20 C -0.180 4.180 21 C -0.129 4.129 22 C -0.015 4.015 23 C -0.167 4.167 24 C -0.062 4.062 25 O -0.553 6.553 26 Si 0.769 3.231 27 C -0.043 4.043 28 C -0.213 4.213 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.414 0.586 33 H 0.109 0.891 34 H 0.056 0.944 35 H 0.415 0.585 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.100 0.900 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.088 0.912 44 H 0.059 0.941 45 H 0.095 0.905 46 H 0.130 0.870 47 H 0.153 0.847 48 H 0.113 0.887 49 H 0.396 0.604 50 H -0.302 1.302 51 H -0.285 1.285 52 H 0.156 0.844 53 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.743 3.755 4.083 6.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.225 6.225 3 C 0.121 3.879 4 C -0.201 4.201 5 C 0.346 3.654 6 O -0.445 6.445 7 N -0.357 5.357 8 C 0.016 3.984 9 H 0.117 0.883 10 C -0.203 4.203 11 C 0.033 3.967 12 H 0.126 0.874 13 N -0.346 5.346 14 C 0.401 3.599 15 O -0.481 6.481 16 O -0.285 6.285 17 C 0.090 3.910 18 C -0.236 4.236 19 C -0.195 4.195 20 C -0.238 4.238 21 C -0.168 4.168 22 C -0.034 4.034 23 C -0.168 4.168 24 C -0.173 4.173 25 O -0.361 6.361 26 Si 0.676 3.324 27 C -0.061 4.061 28 C -0.231 4.231 29 H 0.125 0.875 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.252 0.748 33 H 0.128 0.872 34 H 0.074 0.926 35 H 0.252 0.748 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.118 0.882 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.113 0.887 46 H 0.148 0.852 47 H 0.170 0.830 48 H 0.130 0.870 49 H 0.246 0.754 50 H -0.231 1.231 51 H -0.212 1.212 52 H 0.173 0.827 53 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.510 3.619 2.808 5.223 hybrid contribution -0.053 -0.225 -0.425 0.484 sum -2.562 3.394 2.383 4.875 Atomic orbital electron populations 1.23441 0.76578 1.05430 1.02843 1.86334 1.23155 1.26442 1.86570 1.19437 0.91424 0.85521 0.91472 1.19430 0.91119 0.94075 1.15520 1.18343 0.82841 0.88583 0.75637 1.90811 1.72547 1.30357 1.50742 1.45749 1.04970 1.10180 1.74844 1.22588 0.90634 0.88313 0.96853 0.88342 1.24003 0.96280 1.02403 0.97594 1.21668 0.99661 0.77776 0.97584 0.87358 1.44421 1.40112 1.06985 1.43078 1.18282 0.80383 0.81104 0.80144 1.90902 1.43001 1.78618 1.35545 1.86320 1.60884 1.17422 1.63874 1.22380 0.87541 0.89364 0.91694 1.22469 0.94962 1.03498 1.02694 1.21896 1.03929 0.90890 1.02785 1.22476 1.02685 1.03997 0.94597 1.23727 0.92391 1.01781 0.98890 1.21110 1.00829 0.89058 0.92377 1.20250 0.93782 0.96052 1.06728 1.25008 1.01875 0.98863 0.91508 1.86470 1.38009 1.95298 1.16317 0.93858 0.77902 0.74126 0.86551 1.21280 0.93790 0.97840 0.93181 1.21468 1.01749 0.90948 1.08961 0.87521 0.90590 0.91104 0.74760 0.87234 0.92555 0.74806 0.91821 0.89392 0.91659 0.91387 0.88184 0.91081 0.91756 0.89310 0.92223 0.88659 0.85224 0.82955 0.86963 0.75406 1.23068 1.21204 0.82664 0.82117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 9.81 113.37 1.11 1.10 16 2 O -0.31 -2.56 8.57 -68.73 -0.59 -3.15 16 3 C 0.17 0.81 6.70 22.85 0.15 0.96 16 4 C -0.20 -0.83 5.89 -20.01 -0.12 -0.95 16 5 C 0.56 4.30 7.76 86.69 0.67 4.98 16 6 O -0.57 -9.42 14.76 16.92 0.25 -9.17 16 7 N -0.70 0.11 5.31 -443.19 -2.35 -2.24 16 8 C 0.12 -0.05 4.12 45.52 0.19 0.13 16 9 H 0.10 0.38 7.46 -2.39 -0.02 0.36 16 10 C -0.16 -0.07 7.68 31.12 0.24 0.17 16 11 C 0.14 -0.10 4.32 45.52 0.20 0.10 16 12 H 0.11 0.13 7.46 -2.39 -0.02 0.11 16 13 N -0.69 -1.46 5.27 -567.59 -2.99 -4.45 16 14 C 0.65 5.24 8.06 129.79 1.05 6.29 16 15 O -0.59 -7.54 11.48 19.80 0.23 -7.32 16 16 O -0.37 -2.66 9.94 -55.49 -0.55 -3.21 16 17 C 0.13 0.53 1.13 -10.80 -0.01 0.52 16 18 C -0.18 -0.69 8.37 71.98 0.60 -0.08 16 19 C -0.14 0.11 8.85 71.98 0.64 0.74 16 20 C -0.18 -0.86 8.37 71.98 0.60 -0.25 16 21 C -0.13 0.77 7.58 31.12 0.24 1.01 16 22 C -0.02 0.03 9.09 22.52 0.20 0.23 16 23 C -0.17 0.62 5.39 -19.90 -0.11 0.52 16 24 C -0.06 0.31 2.81 71.24 0.20 0.51 16 25 O -0.55 2.62 12.76 -148.98 -1.90 0.72 16 26 Si 0.77 -4.29 29.77 68.60 2.04 -2.25 16 27 C -0.04 0.20 8.66 22.30 0.19 0.39 16 28 C -0.21 0.40 9.03 22.34 0.20 0.60 16 29 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 30 H 0.08 -0.41 7.65 -2.39 -0.02 -0.43 16 31 H 0.07 -0.33 7.67 -2.39 -0.02 -0.35 16 32 H 0.41 -2.61 6.76 -92.71 -0.63 -3.24 16 33 H 0.11 -0.22 8.14 -2.39 -0.02 -0.23 16 34 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.42 -0.48 8.81 -92.71 -0.82 -1.29 16 36 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.06 0.58 5.88 -2.39 -0.01 0.57 16 39 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 40 H 0.10 -0.43 8.14 -2.39 -0.02 -0.45 16 41 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 42 H 0.06 0.64 5.88 -2.39 -0.01 0.62 16 43 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 44 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 45 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 46 H 0.13 -1.34 8.12 -2.38 -0.02 -1.36 16 47 H 0.15 -0.97 6.40 -2.91 -0.02 -0.99 16 48 H 0.11 -0.49 7.96 -2.39 -0.02 -0.51 16 49 H 0.40 -4.82 8.70 -74.06 -0.64 -5.47 16 50 H -0.30 -0.85 7.11 99.48 0.71 -0.14 16 51 H -0.28 0.26 7.11 99.48 0.71 0.97 16 52 H 0.16 -1.48 4.85 -2.91 -0.01 -1.50 16 53 H 0.16 -1.10 6.30 -2.91 -0.02 -1.12 16 Total: 0.00 -28.22 425.15 -0.69 -28.92 By element: Atomic # 1 Polarization: -13.74 SS G_CDS: -1.08 Total: -14.81 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 6.25 Total: 16.97 kcal Atomic # 7 Polarization: -1.36 SS G_CDS: -5.34 Total: -6.70 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -2.56 Total: -22.12 kcal Atomic # 14 Polarization: -4.29 SS G_CDS: 2.04 Total: -2.25 kcal Total: -28.22 -0.69 -28.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941010_12496546.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.889 kcal (2) G-P(sol) polarization free energy of solvation -28.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds