Wall clock time and date at job start Sun Mar 7 2021 00:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47260 * 2 1 4 4 C 1.53000 * 109.47479 * 239.99432 * 2 1 3 5 5 O 1.45210 * 109.46980 * 119.99338 * 2 1 3 6 6 C 1.34646 * 116.99685 * 60.00000 * 5 2 1 7 7 O 1.21505 * 119.99932 * 0.02562 * 6 5 2 8 8 N 1.34768 * 119.99482 * 179.97438 * 6 5 2 9 9 C 1.46506 * 119.99609 * 179.97438 * 8 6 5 10 10 H 1.08997 * 112.84990 * 336.20270 * 9 8 6 11 11 C 1.53785 * 113.68769 * 107.46627 * 9 8 6 12 12 C 1.53780 * 87.07775 * 139.99310 * 11 9 8 13 13 H 1.08998 * 113.68773 * 220.00537 * 12 11 9 14 14 N 1.46506 * 113.61729 * 89.11613 * 12 11 9 15 15 C 1.34773 * 119.99968 * 107.49695 * 14 12 11 16 16 O 1.21646 * 120.00142 * 359.73141 * 15 14 12 17 17 C 1.47066 * 120.00063 * 180.02562 * 15 14 12 18 18 C 1.35861 * 125.42970 * 179.75382 * 17 15 14 19 19 C 1.41590 * 107.72886 * 180.02562 * 18 17 15 20 20 C 1.40063 * 133.37982 * 180.02562 * 19 18 17 21 21 C 1.36472 * 119.82645 * 179.97438 * 20 19 18 22 22 C 1.38896 * 120.62064 * 359.97438 * 21 20 19 23 23 C 1.50698 * 119.67871 * 179.97438 * 22 21 20 24 24 O 1.42894 * 109.47338 * 245.02384 * 23 22 21 25 25 Si 1.86296 * 109.47049 * 5.02848 * 23 22 21 26 26 C 1.37714 * 120.64312 * 0.02562 * 22 21 20 27 27 C 1.39182 * 119.81202 * 359.97438 * 26 22 21 28 28 N 1.37490 * 133.18604 * 180.36713 * 27 26 22 29 29 C 1.53776 * 113.61586 * 205.00107 * 9 8 6 30 30 H 1.09000 * 109.47412 * 300.00339 * 1 2 3 31 31 H 1.09000 * 109.46783 * 60.00762 * 1 2 3 32 32 H 1.09000 * 109.47030 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46898 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.46600 * 299.99350 * 3 2 1 35 35 H 1.08992 * 109.47423 * 59.99385 * 3 2 1 36 36 H 1.09001 * 109.46725 * 300.00036 * 4 2 1 37 37 H 1.08993 * 109.46923 * 59.99954 * 4 2 1 38 38 H 1.09004 * 109.47054 * 180.02562 * 4 2 1 39 39 H 0.96995 * 120.00799 * 0.02562 * 8 6 5 40 40 H 1.08997 * 113.61688 * 25.44514 * 11 9 8 41 41 H 1.09002 * 113.61175 * 254.53812 * 11 9 8 42 42 H 0.96998 * 119.99507 * 287.50550 * 14 12 11 43 43 H 1.08001 * 126.13397 * 0.02562 * 18 17 15 44 44 H 1.07997 * 120.08869 * 359.96579 * 20 19 18 45 45 H 1.08007 * 119.69156 * 180.02562 * 21 20 19 46 46 H 1.08997 * 109.46831 * 125.02483 * 23 22 21 47 47 H 0.96704 * 113.99651 * 60.00089 * 24 23 22 48 48 H 1.48502 * 110.00176 * 179.97438 * 25 23 22 49 49 H 1.48504 * 110.00168 * 301.31509 * 25 23 22 50 50 H 1.08002 * 120.09121 * 179.97438 * 26 22 21 51 51 H 0.96997 * 125.60407 * 359.94023 * 28 27 26 52 52 H 1.09001 * 113.61652 * 105.38640 * 29 9 8 53 53 H 1.09007 * 113.69041 * 334.49839 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 8 2.0140 -0.6844 1.1857 6 6 1.6521 -1.9723 1.3386 7 8 0.9515 -2.5097 0.5039 8 7 2.0679 -2.6655 2.4169 9 6 1.6737 -4.0666 2.5836 10 1 0.7590 -4.3158 2.0458 11 6 2.8200 -5.0636 2.3443 12 6 2.2712 -5.8605 3.5395 13 1 3.0472 -6.2674 4.1879 14 7 1.2612 -6.8546 3.1681 15 6 1.5661 -8.1671 3.1940 16 8 2.6814 -8.5262 3.5210 17 6 0.5524 -9.1651 2.8206 18 6 0.7407 -10.5104 2.8029 19 6 -0.4732 -11.1103 2.3890 20 6 -0.8710 -12.4384 2.1894 21 6 -2.1427 -12.7113 1.7764 22 6 -3.0495 -11.6835 1.5518 23 6 -4.4484 -12.0090 1.0954 24 8 -4.6530 -11.4905 -0.2203 25 14 -4.6815 -13.8572 1.0779 26 6 -2.6824 -10.3697 1.7409 27 6 -1.3910 -10.0658 2.1618 28 7 -0.7449 -8.8840 2.4375 29 6 1.6752 -4.5371 4.0476 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9562 -0.8901 35 1 1.6766 1.9564 0.8898 36 1 1.6767 -1.7490 -1.2490 37 1 1.6767 -0.2076 -2.1391 38 1 3.1301 -0.7217 -1.2488 39 1 2.6274 -2.2366 3.0831 40 1 3.8096 -4.6412 2.5185 41 1 2.7462 -5.5941 1.3949 42 1 0.3731 -6.5681 2.9035 43 1 1.6527 -11.0293 3.0587 44 1 -0.1731 -13.2443 2.3618 45 1 -2.4473 -13.7362 1.6236 46 1 -5.1677 -11.5586 1.7794 47 1 -4.0462 -11.8484 -0.8828 48 1 -6.0574 -14.1914 0.6302 49 1 -3.6858 -14.4863 0.1734 50 1 -3.3946 -9.5775 1.5632 51 1 -1.1349 -7.9983 2.3713 52 1 0.6774 -4.6425 4.4734 53 1 2.3514 -3.9714 4.6887 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941010_13158378.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:22:06 Heat of formation + Delta-G solvation = -57.780959 kcal Electronic energy + Delta-G solvation = -35202.824007 eV Core-core repulsion = 30428.618522 eV Total energy + Delta-G solvation = -4774.205485 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.188 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.74956 -41.98398 -41.17137 -39.77218 -38.96174 -37.97945 -36.99004 -35.66351 -34.93607 -33.52419 -33.22088 -31.07704 -30.42848 -28.40994 -28.33895 -27.32480 -26.85907 -25.95956 -24.45466 -23.32149 -23.10222 -22.05933 -21.48432 -21.18839 -20.67786 -19.67315 -19.15122 -18.54140 -18.06515 -17.74233 -17.23307 -17.11739 -16.96543 -16.60300 -16.45794 -16.19149 -15.97552 -15.67582 -15.54781 -15.43139 -15.16466 -15.04155 -14.76584 -14.65777 -14.57609 -14.47743 -14.04921 -13.93927 -13.60697 -13.40047 -13.27795 -13.17682 -13.13459 -12.95195 -12.90446 -12.59685 -12.56676 -12.53634 -12.34358 -12.08527 -12.03213 -11.74896 -11.55629 -11.47952 -11.43279 -11.15979 -10.98068 -10.60739 -10.40425 -10.17682 -9.35718 -8.84891 -4.86870 -0.39778 0.51597 0.91253 1.13453 1.33774 1.64812 1.68604 1.69574 1.88574 2.01093 2.12696 2.75088 3.10006 3.27396 3.39468 3.42801 3.53602 3.65166 3.70179 3.72822 3.74467 3.77430 3.89734 3.90694 4.02915 4.23110 4.27874 4.37454 4.44393 4.50684 4.51043 4.57204 4.60020 4.64153 4.66603 4.72605 4.72963 4.76521 4.80897 4.83974 4.87405 4.88189 4.91333 4.97850 5.06493 5.18289 5.22804 5.26982 5.31820 5.39425 5.44718 5.52418 5.55543 5.56682 5.96591 6.18461 6.35277 6.38432 6.49788 6.88198 7.29454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.642 3.358 7 O -0.595 6.595 8 N -0.688 5.688 9 C 0.137 3.863 10 H 0.107 0.893 11 C -0.163 4.163 12 C 0.121 3.879 13 H 0.109 0.891 14 N -0.699 5.699 15 C 0.591 3.409 16 O -0.554 6.554 17 C 0.009 3.991 18 C -0.115 4.115 19 C -0.134 4.134 20 C -0.057 4.057 21 C -0.149 4.149 22 C -0.085 4.085 23 C -0.081 4.081 24 O -0.549 6.549 25 Si 0.770 3.230 26 C -0.110 4.110 27 C 0.107 3.893 28 N -0.566 5.566 29 C -0.130 4.130 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.419 0.581 40 H 0.108 0.892 41 H 0.061 0.939 42 H 0.410 0.590 43 H 0.157 0.843 44 H 0.148 0.852 45 H 0.146 0.854 46 H 0.128 0.872 47 H 0.386 0.614 48 H -0.305 1.305 49 H -0.282 1.282 50 H 0.134 0.866 51 H 0.430 0.570 52 H 0.098 0.902 53 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.888 3.090 3.705 4.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.284 6.284 6 C 0.396 3.604 7 O -0.486 6.486 8 N -0.347 5.347 9 C 0.033 3.967 10 H 0.125 0.875 11 C -0.203 4.203 12 C 0.015 3.985 13 H 0.127 0.873 14 N -0.350 5.350 15 C 0.378 3.622 16 O -0.432 6.432 17 C -0.101 4.101 18 C -0.142 4.142 19 C -0.139 4.139 20 C -0.076 4.076 21 C -0.168 4.168 22 C -0.088 4.088 23 C -0.190 4.190 24 O -0.357 6.357 25 Si 0.676 3.324 26 C -0.131 4.131 27 C -0.003 4.003 28 N -0.172 5.172 29 C -0.168 4.168 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.257 0.743 40 H 0.126 0.874 41 H 0.079 0.921 42 H 0.247 0.753 43 H 0.175 0.825 44 H 0.166 0.834 45 H 0.163 0.837 46 H 0.145 0.855 47 H 0.235 0.765 48 H -0.234 1.234 49 H -0.209 1.209 50 H 0.152 0.848 51 H 0.271 0.729 52 H 0.117 0.883 53 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.071 2.516 3.330 4.309 hybrid contribution 0.075 1.165 -1.286 1.737 sum -0.996 3.681 2.043 4.326 Atomic orbital electron populations 1.22466 0.93937 1.03713 1.03528 1.22341 0.94513 0.92555 0.81465 1.21892 1.02443 0.90914 1.04266 1.22472 1.01583 1.02221 0.97457 1.86321 1.71504 1.23376 1.47173 1.18454 0.78574 0.80719 0.82647 1.90899 1.42432 1.71038 1.44197 1.44719 1.54819 1.12118 1.23084 1.22705 0.98482 0.77266 0.98257 0.87469 1.24015 1.00267 0.97039 0.98990 1.21720 0.91743 0.87807 0.97229 0.87318 1.45471 1.16339 1.04671 1.68482 1.17235 0.86009 0.82119 0.76820 1.90863 1.22430 1.80729 1.49170 1.19972 0.85356 0.94767 1.10019 1.21112 0.98617 0.91637 1.02838 1.18447 0.94021 0.94247 1.07179 1.20628 0.96386 0.94420 0.96152 1.20727 0.93557 0.99215 1.03253 1.20073 0.96306 0.92767 0.99609 1.25234 0.95202 1.12812 0.85737 1.86575 1.61681 1.69110 1.18318 0.93901 0.75883 0.72739 0.89871 1.20011 0.92768 0.97216 1.03062 1.18455 0.94549 0.85501 1.01845 1.41803 1.09106 1.08143 1.58099 1.23736 1.04414 0.93646 0.95040 0.91821 0.89599 0.91712 0.91233 0.88409 0.91065 0.91831 0.89555 0.92055 0.74299 0.87388 0.92064 0.75343 0.82505 0.83450 0.83720 0.85474 0.76460 1.23395 1.20856 0.84774 0.72929 0.88346 0.85472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.38 8.37 71.98 0.60 0.22 16 2 C 0.13 0.27 1.13 -10.79 -0.01 0.25 16 3 C -0.14 0.37 8.85 71.98 0.64 1.01 16 4 C -0.18 -0.51 8.37 71.98 0.60 0.09 16 5 O -0.37 -1.51 9.94 -55.55 -0.55 -2.06 16 6 C 0.64 3.05 8.06 129.79 1.05 4.10 16 7 O -0.59 -5.99 11.48 19.83 0.23 -5.76 16 8 N -0.69 1.70 5.36 -567.61 -3.04 -1.34 16 9 C 0.14 -0.61 4.11 45.52 0.19 -0.43 16 10 H 0.11 -0.22 7.46 -2.39 -0.02 -0.24 16 11 C -0.16 0.51 7.68 31.12 0.24 0.75 16 12 C 0.12 -0.52 4.32 45.51 0.20 -0.32 16 13 H 0.11 -0.17 7.47 -2.39 -0.02 -0.19 16 14 N -0.70 2.30 5.26 -443.64 -2.33 -0.03 16 15 C 0.59 2.24 7.80 86.56 0.68 2.91 16 16 O -0.55 -6.35 16.44 -4.18 -0.07 -6.42 16 17 C 0.01 0.02 6.97 39.91 0.28 0.30 16 18 C -0.11 -0.53 10.53 22.55 0.24 -0.29 16 19 C -0.13 -0.47 6.16 -21.36 -0.13 -0.61 16 20 C -0.06 -0.02 10.06 22.30 0.22 0.20 16 21 C -0.15 0.19 8.59 22.01 0.19 0.37 16 22 C -0.09 0.04 5.36 -19.83 -0.11 -0.06 16 23 C -0.08 0.13 2.79 71.24 0.20 0.33 16 24 O -0.55 -0.99 12.83 -148.98 -1.91 -2.90 16 25 Si 0.77 -2.01 29.85 68.60 2.05 0.04 16 26 C -0.11 -0.06 9.69 22.37 0.22 0.16 16 27 C 0.11 0.21 7.25 39.13 0.28 0.49 16 28 N -0.57 0.76 6.07 -177.18 -1.08 -0.31 16 29 C -0.13 1.22 7.58 31.12 0.24 1.46 16 30 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 32 H 0.06 0.46 5.88 -2.39 -0.01 0.45 16 33 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 34 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 35 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 36 H 0.06 0.51 5.88 -2.39 -0.01 0.50 16 37 H 0.09 -0.04 8.14 -2.39 -0.02 -0.05 16 38 H 0.06 0.15 8.14 -2.38 -0.02 0.13 16 39 H 0.42 -3.03 8.84 -92.71 -0.82 -3.85 16 40 H 0.11 -0.48 8.14 -2.39 -0.02 -0.50 16 41 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 42 H 0.41 -3.45 7.76 -92.71 -0.72 -4.17 16 43 H 0.16 0.61 8.06 -2.91 -0.02 0.59 16 44 H 0.15 -0.54 8.06 -2.91 -0.02 -0.56 16 45 H 0.15 -0.73 4.78 -2.91 -0.01 -0.74 16 46 H 0.13 -0.45 7.96 -2.39 -0.02 -0.47 16 47 H 0.39 -1.29 8.70 -74.05 -0.64 -1.94 16 48 H -0.31 -1.64 7.11 99.48 0.71 -0.93 16 49 H -0.28 -0.31 7.00 99.48 0.70 0.39 16 50 H 0.13 -0.21 8.06 -2.91 -0.02 -0.23 16 51 H 0.43 -3.27 8.12 -92.71 -0.75 -4.03 16 52 H 0.10 -1.09 8.14 -2.39 -0.02 -1.11 16 53 H 0.13 -1.61 8.12 -2.38 -0.02 -1.63 16 Total: 0.00 -24.63 431.56 -2.82 -27.45 By element: Atomic # 1 Polarization: -17.69 SS G_CDS: -1.91 Total: -19.60 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 5.80 Total: 10.94 kcal Atomic # 7 Polarization: 4.76 SS G_CDS: -6.45 Total: -1.69 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -2.30 Total: -17.14 kcal Atomic # 14 Polarization: -2.01 SS G_CDS: 2.05 Total: 0.04 kcal Total: -24.63 -2.82 -27.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941010_13158378.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.331 kcal (2) G-P(sol) polarization free energy of solvation -24.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds