Wall clock time and date at job start Sun Mar 7 2021 00:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.46943 * 2 1 4 4 C 1.52992 * 109.47225 * 239.99986 * 2 1 3 5 5 O 1.45202 * 109.46876 * 120.00126 * 2 1 3 6 6 C 1.34633 * 117.00220 * 60.00572 * 5 2 1 7 7 O 1.21511 * 119.99889 * 359.97438 * 6 5 2 8 8 N 1.34779 * 120.00147 * 179.97438 * 6 5 2 9 9 C 1.46502 * 119.99869 * 179.97438 * 8 6 5 10 10 H 1.08993 * 112.84939 * 23.80703 * 9 8 6 11 11 C 1.53780 * 113.61183 * 155.00117 * 9 8 6 12 12 C 1.53784 * 87.08171 * 89.20123 * 11 9 8 13 13 H 1.09002 * 113.61081 * 270.79933 * 12 11 9 14 14 N 1.46495 * 113.61485 * 139.98202 * 12 11 9 15 15 C 1.34777 * 120.00114 * 154.99535 * 14 12 11 16 16 O 1.21580 * 120.00109 * 0.02562 * 15 14 12 17 17 C 1.47654 * 120.00171 * 179.97438 * 15 14 12 18 18 C 1.40167 * 119.97264 * 359.97438 * 17 15 14 19 19 C 1.36357 * 120.66967 * 180.02562 * 18 17 15 20 20 C 1.39330 * 120.23754 * 359.97438 * 19 18 17 21 21 N 1.37402 * 133.25182 * 180.02562 * 20 19 18 22 22 C 1.36869 * 109.97440 * 179.74107 * 21 20 19 23 23 C 1.34189 * 109.96757 * 0.45046 * 22 21 20 24 24 C 1.50699 * 126.53750 * 179.83344 * 23 22 21 25 25 O 1.42903 * 109.47152 * 254.68835 * 24 23 22 26 26 Si 1.86305 * 109.47184 * 14.68307 * 24 23 22 27 27 C 1.40906 * 119.63709 * 0.02562 * 20 19 18 28 28 C 1.39183 * 119.97834 * 180.02562 * 17 15 14 29 29 C 1.53774 * 87.08052 * 25.43306 * 12 11 9 30 30 H 1.08998 * 109.47731 * 299.99558 * 1 2 3 31 31 H 1.08995 * 109.47178 * 60.00320 * 1 2 3 32 32 H 1.09000 * 109.47384 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46776 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47312 * 300.00211 * 3 2 1 35 35 H 1.09007 * 109.46887 * 60.00196 * 3 2 1 36 36 H 1.09005 * 109.47618 * 299.99834 * 4 2 1 37 37 H 1.09002 * 109.47399 * 60.00132 * 4 2 1 38 38 H 1.09004 * 109.47039 * 179.97438 * 4 2 1 39 39 H 0.97000 * 119.99835 * 0.02562 * 8 6 5 40 40 H 1.09007 * 113.61601 * 334.65231 * 11 9 8 41 41 H 1.08993 * 113.61462 * 203.75029 * 11 9 8 42 42 H 0.97006 * 120.00117 * 335.00236 * 14 12 11 43 43 H 1.07998 * 119.66684 * 359.97438 * 18 17 15 44 44 H 1.08003 * 119.88201 * 180.02562 * 19 18 17 45 45 H 0.96997 * 125.01327 * 0.04537 * 21 20 19 46 46 H 1.08004 * 125.01187 * 180.31044 * 22 21 20 47 47 H 1.08997 * 109.47198 * 134.68512 * 24 23 22 48 48 H 0.96700 * 114.00311 * 180.02562 * 25 24 23 49 49 H 1.48499 * 109.99670 * 178.68093 * 26 24 23 50 50 H 1.48497 * 110.00233 * 300.00062 * 26 24 23 51 51 H 1.08008 * 120.30187 * 0.02562 * 28 17 15 52 52 H 1.08998 * 113.61829 * 89.11828 * 29 12 11 53 53 H 1.09000 * 113.61586 * 220.02003 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6523 -1.9724 1.3383 7 8 0.9510 -2.5095 0.5039 8 7 2.0681 -2.6658 2.4166 9 6 1.6740 -4.0670 2.5830 10 1 1.4210 -4.5504 1.6395 11 6 2.6475 -4.8817 3.4510 12 6 1.8062 -4.4479 4.6630 13 1 2.1357 -3.5098 5.1099 14 7 1.6096 -5.5109 5.6517 15 6 1.3602 -5.1968 6.9384 16 8 1.2978 -4.0312 7.2785 17 6 1.1615 -6.2682 7.9347 18 6 1.2319 -7.6118 7.5417 19 6 1.0502 -8.6126 8.4499 20 6 0.7917 -8.3100 9.7851 21 7 0.5713 -9.0824 10.8999 22 6 0.3685 -8.2814 11.9910 23 6 0.4382 -6.9906 11.6312 24 6 0.2676 -5.7968 12.5350 25 8 -1.0101 -5.2010 12.3011 26 14 0.3824 -6.3422 14.3127 27 6 0.7184 -6.9632 10.1928 28 6 0.9033 -5.9433 9.2633 29 6 0.6277 -4.2876 3.6883 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1299 1.4424 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 1.6767 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7208 -1.2494 39 1 2.6276 -2.2369 3.0829 40 1 3.6625 -4.4843 3.4593 41 1 2.6132 -5.9536 3.2569 42 1 1.6591 -6.4409 5.3803 43 1 1.4313 -7.8569 6.5090 44 1 1.1076 -9.6436 8.1332 45 1 0.5651 -10.0523 10.9126 46 1 0.1781 -8.6361 12.9933 47 1 1.0516 -5.0686 12.3270 48 1 -1.1885 -4.4248 12.8495 49 1 0.2475 -5.1693 15.2134 50 1 -0.6813 -7.3352 14.6090 51 1 0.8469 -4.9093 9.5704 52 1 0.0412 -5.1971 3.5590 53 1 0.0121 -3.4106 3.8880 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941010_13287722.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:22:21 Heat of formation + Delta-G solvation = -58.761577 kcal Electronic energy + Delta-G solvation = -35115.988104 eV Core-core repulsion = 30341.740096 eV Total energy + Delta-G solvation = -4774.248008 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.188 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.45433 -42.01044 -41.17422 -39.85130 -38.03009 -37.88977 -37.46147 -35.58169 -34.93467 -33.42238 -33.27310 -30.86387 -30.46028 -28.38893 -28.32533 -26.79623 -26.47966 -26.33752 -24.47981 -23.46219 -23.44170 -21.68152 -21.15375 -20.82984 -20.43762 -19.35550 -19.06104 -18.52511 -18.40894 -17.85013 -17.46423 -17.20942 -17.10971 -16.54428 -16.11832 -16.02824 -15.86728 -15.54764 -15.40878 -15.34481 -15.04477 -14.99515 -14.80306 -14.70352 -14.40374 -14.15415 -13.95108 -13.77316 -13.54263 -13.47669 -13.40155 -13.16773 -13.08729 -12.93991 -12.89139 -12.79126 -12.59920 -12.53966 -12.34908 -12.15685 -11.96983 -11.82513 -11.67246 -11.42209 -11.15333 -11.06728 -10.78900 -10.38257 -10.30250 -10.08328 -9.32291 -8.81234 -4.89155 -0.15200 0.21380 1.10024 1.33115 1.48442 1.63499 1.68587 1.83183 1.96814 2.09401 2.14074 2.88021 3.06982 3.32118 3.49811 3.52798 3.64472 3.71766 3.73902 3.77024 3.80863 3.83762 3.92097 3.97972 4.03414 4.14639 4.26391 4.40899 4.43300 4.53338 4.54447 4.59301 4.60477 4.64252 4.69413 4.74324 4.75189 4.80107 4.81902 4.85296 4.86100 4.94431 4.97195 5.01072 5.10761 5.24856 5.25818 5.28380 5.34219 5.35293 5.47073 5.51903 5.57311 5.59785 5.98653 6.31968 6.52257 6.58244 6.62637 7.19315 7.28512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.126 3.874 3 C -0.138 4.138 4 C -0.179 4.179 5 O -0.371 6.371 6 C 0.647 3.353 7 O -0.590 6.590 8 N -0.687 5.687 9 C 0.137 3.863 10 H 0.110 0.890 11 C -0.127 4.127 12 C 0.118 3.882 13 H 0.097 0.903 14 N -0.699 5.699 15 C 0.562 3.438 16 O -0.589 6.589 17 C -0.180 4.180 18 C -0.065 4.065 19 C -0.125 4.125 20 C 0.111 3.889 21 N -0.571 5.571 22 C 0.079 3.921 23 C -0.183 4.183 24 C -0.065 4.065 25 O -0.564 6.564 26 Si 0.785 3.215 27 C -0.130 4.130 28 C -0.021 4.021 29 C -0.164 4.164 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.415 0.585 40 H 0.095 0.905 41 H 0.134 0.866 42 H 0.418 0.582 43 H 0.165 0.835 44 H 0.163 0.837 45 H 0.439 0.561 46 H 0.205 0.795 47 H 0.070 0.930 48 H 0.389 0.611 49 H -0.293 1.293 50 H -0.278 1.278 51 H 0.108 0.892 52 H 0.112 0.888 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.983 -7.567 1.367 9.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.090 3.910 3 C -0.195 4.195 4 C -0.236 4.236 5 O -0.285 6.285 6 C 0.401 3.599 7 O -0.481 6.481 8 N -0.346 5.346 9 C 0.032 3.968 10 H 0.128 0.872 11 C -0.166 4.166 12 C 0.013 3.987 13 H 0.115 0.885 14 N -0.350 5.350 15 C 0.351 3.649 16 O -0.471 6.471 17 C -0.184 4.184 18 C -0.085 4.085 19 C -0.145 4.145 20 C 0.001 3.999 21 N -0.175 5.175 22 C -0.049 4.049 23 C -0.190 4.190 24 C -0.173 4.173 25 O -0.374 6.374 26 Si 0.688 3.312 27 C -0.134 4.134 28 C -0.041 4.041 29 C -0.204 4.204 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.082 0.918 39 H 0.252 0.748 40 H 0.113 0.887 41 H 0.152 0.848 42 H 0.257 0.743 43 H 0.182 0.818 44 H 0.181 0.819 45 H 0.281 0.719 46 H 0.222 0.778 47 H 0.088 0.912 48 H 0.239 0.761 49 H -0.220 1.220 50 H -0.204 1.204 51 H 0.126 0.874 52 H 0.130 0.870 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.160 -7.614 1.477 8.802 hybrid contribution -0.946 1.029 0.096 1.401 sum 3.215 -6.585 1.573 7.495 Atomic orbital electron populations 1.22477 0.94157 1.03712 1.03427 1.22373 0.94393 0.92622 0.81583 1.21896 1.02522 0.90912 1.04186 1.22466 1.01710 1.02277 0.97143 1.86317 1.71550 1.23271 1.47394 1.18289 0.78534 0.80785 0.82325 1.90900 1.41962 1.70868 1.44337 1.44434 1.54874 1.12197 1.23122 1.21683 0.96513 0.79179 0.99407 0.87247 1.23729 0.98903 1.02743 0.91208 1.22623 0.96912 0.92116 0.87054 0.88511 1.45685 1.71695 1.10899 1.06770 1.18498 0.75179 0.88018 0.83170 1.90760 1.53305 1.22092 1.80924 1.19597 1.11366 0.94185 0.93246 1.20917 0.97103 0.89559 1.00875 1.20088 1.04311 1.01599 0.88513 1.18675 1.01196 0.89960 0.90068 1.41728 1.60851 1.09788 1.05131 1.22075 1.00309 0.89174 0.93320 1.19822 1.12901 0.93942 0.92328 1.24555 0.86672 0.95326 1.10710 1.86587 1.35809 1.48764 1.66220 0.94135 0.87223 0.80024 0.69852 1.19192 1.07330 0.92876 0.94033 1.20586 0.93613 0.98312 0.91605 1.24018 0.97605 1.03260 0.95480 0.92276 0.89323 0.91720 0.91068 0.88189 0.91439 0.91622 0.89409 0.91799 0.74834 0.88679 0.84827 0.74283 0.81753 0.81913 0.71937 0.77846 0.91218 0.76090 1.21997 1.20436 0.87391 0.86956 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.86 8.37 71.98 0.60 -0.26 16 2 C 0.13 0.53 1.13 -10.80 -0.01 0.52 16 3 C -0.14 0.10 8.85 71.98 0.64 0.74 16 4 C -0.18 -0.66 8.37 71.98 0.60 -0.05 16 5 O -0.37 -2.63 9.94 -55.43 -0.55 -3.18 16 6 C 0.65 5.10 8.06 129.79 1.05 6.14 16 7 O -0.59 -7.38 11.48 19.81 0.23 -7.15 16 8 N -0.69 -1.23 5.27 -567.61 -2.99 -4.22 16 9 C 0.14 -0.20 4.32 45.52 0.20 0.00 16 10 H 0.11 0.03 7.46 -2.39 -0.02 0.02 16 11 C -0.13 0.91 7.58 31.12 0.24 1.15 16 12 C 0.12 -0.13 4.12 45.52 0.19 0.06 16 13 H 0.10 0.34 7.46 -2.39 -0.02 0.32 16 14 N -0.70 0.79 5.30 -443.10 -2.35 -1.56 16 15 C 0.56 4.43 7.76 86.73 0.67 5.10 16 16 O -0.59 -10.23 15.93 -3.97 -0.06 -10.29 16 17 C -0.18 -1.04 5.87 -20.10 -0.12 -1.16 16 18 C -0.06 0.15 9.46 22.30 0.21 0.36 16 19 C -0.12 0.39 10.00 22.09 0.22 0.61 16 20 C 0.11 0.14 7.27 39.19 0.28 0.42 16 21 N -0.57 2.32 6.05 -187.48 -1.13 1.18 16 22 C 0.08 -0.15 10.43 82.98 0.87 0.71 16 23 C -0.18 -0.82 5.62 -18.61 -0.10 -0.93 16 24 C -0.07 -0.21 3.05 71.24 0.22 0.01 16 25 O -0.56 -4.02 12.86 -148.98 -1.92 -5.94 16 26 Si 0.79 -1.98 30.79 68.60 2.11 0.13 16 27 C -0.13 -0.95 6.34 -20.21 -0.13 -1.08 16 28 C -0.02 -0.22 9.64 22.73 0.22 0.00 16 29 C -0.16 0.03 7.68 31.12 0.24 0.27 16 30 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.06 0.64 5.88 -2.39 -0.01 0.63 16 33 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 34 H 0.10 -0.43 8.14 -2.39 -0.02 -0.45 16 35 H 0.07 -0.03 8.14 -2.38 -0.02 -0.05 16 36 H 0.06 0.57 5.88 -2.38 -0.01 0.55 16 37 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 38 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 39 H 0.41 -0.58 8.81 -92.71 -0.82 -1.40 16 40 H 0.09 -0.76 8.14 -2.38 -0.02 -0.78 16 41 H 0.13 -1.64 8.12 -2.39 -0.02 -1.66 16 42 H 0.42 -3.59 6.73 -92.70 -0.62 -4.21 16 43 H 0.17 -1.75 6.36 -2.91 -0.02 -1.77 16 44 H 0.16 -1.67 8.06 -2.91 -0.02 -1.69 16 45 H 0.44 -5.05 8.96 -92.71 -0.83 -5.88 16 46 H 0.21 -1.72 6.30 -2.91 -0.02 -1.74 16 47 H 0.07 0.18 7.96 -2.39 -0.02 0.16 16 48 H 0.39 -0.33 8.74 -74.06 -0.65 -0.98 16 49 H -0.29 -0.82 7.11 99.48 0.71 -0.12 16 50 H -0.28 -0.36 7.05 99.48 0.70 0.34 16 51 H 0.11 1.55 7.64 -2.91 -0.02 1.53 16 52 H 0.11 -0.33 8.14 -2.39 -0.02 -0.35 16 53 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 Total: 0.00 -32.82 431.50 -2.48 -35.30 By element: Atomic # 1 Polarization: -14.99 SS G_CDS: -1.89 Total: -16.88 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: 6.08 Total: 12.61 kcal Atomic # 7 Polarization: 1.88 SS G_CDS: -6.48 Total: -4.60 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -2.30 Total: -26.56 kcal Atomic # 14 Polarization: -1.98 SS G_CDS: 2.11 Total: 0.13 kcal Total: -32.82 -2.48 -35.30 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941010_13287722.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.464 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds