Wall clock time and date at job start Sun Mar 7 2021 00:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46715 * 2 1 4 4 C 1.52999 * 109.47365 * 240.00235 * 2 1 3 5 5 O 1.45196 * 109.46812 * 119.99743 * 2 1 3 6 6 C 1.34635 * 117.00072 * 60.00803 * 5 2 1 7 7 O 1.21507 * 119.99959 * 359.97438 * 6 5 2 8 8 N 1.34778 * 120.00127 * 179.97438 * 6 5 2 9 9 C 1.46498 * 119.99939 * 179.97438 * 8 6 5 10 10 H 1.08998 * 112.84715 * 23.81376 * 9 8 6 11 11 C 1.53783 * 113.61256 * 155.00195 * 9 8 6 12 12 C 1.53785 * 87.07889 * 89.20393 * 11 9 8 13 13 H 1.09001 * 113.61663 * 270.79970 * 12 11 9 14 14 N 1.46505 * 113.61226 * 139.98333 * 12 11 9 15 15 C 1.34771 * 119.99985 * 156.52742 * 14 12 11 16 16 O 1.21519 * 120.00041 * 0.02562 * 15 14 12 17 17 C 1.48165 * 119.99972 * 179.97438 * 15 14 12 18 18 N 1.32717 * 119.72716 * 0.02562 * 17 15 14 19 19 C 1.31520 * 121.64619 * 179.97438 * 18 17 15 20 20 C 1.38559 * 120.90142 * 0.27819 * 19 18 17 21 21 C 1.50701 * 120.31948 * 179.70076 * 20 19 18 22 22 O 1.42905 * 109.46845 * 244.99389 * 21 20 19 23 23 Si 1.86296 * 109.47288 * 4.99471 * 21 20 19 24 24 C 1.38624 * 119.35263 * 359.42621 * 20 19 18 25 25 C 1.38592 * 118.48658 * 0.56067 * 24 20 19 26 26 C 1.53776 * 87.17259 * 25.39003 * 12 11 9 27 27 H 1.08997 * 109.47195 * 299.99543 * 1 2 3 28 28 H 1.09000 * 109.46719 * 60.00200 * 1 2 3 29 29 H 1.09001 * 109.46714 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46976 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47758 * 299.99983 * 3 2 1 32 32 H 1.09004 * 109.47266 * 60.00177 * 3 2 1 33 33 H 1.09005 * 109.47039 * 300.00187 * 4 2 1 34 34 H 1.08997 * 109.47165 * 59.99435 * 4 2 1 35 35 H 1.08997 * 109.46954 * 179.97438 * 4 2 1 36 36 H 0.97003 * 119.99992 * 0.02562 * 8 6 5 37 37 H 1.09001 * 113.61452 * 334.65839 * 11 9 8 38 38 H 1.09000 * 113.69285 * 203.76262 * 11 9 8 39 39 H 0.96998 * 119.99504 * 336.53144 * 14 12 11 40 40 H 1.08002 * 119.54502 * 179.97438 * 19 18 17 41 41 H 1.08996 * 109.46934 * 125.00169 * 21 20 19 42 42 H 0.96705 * 113.99681 * 60.00115 * 22 21 20 43 43 H 1.48503 * 109.99679 * 58.68475 * 23 21 20 44 44 H 1.48501 * 109.99790 * 179.97438 * 23 21 20 45 45 H 1.07999 * 120.75624 * 180.28240 * 24 20 19 46 46 H 1.08004 * 120.46874 * 179.71080 * 25 24 20 47 47 H 1.09006 * 113.61388 * 89.15930 * 26 12 11 48 48 H 1.09001 * 113.61513 * 220.05602 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9511 -2.5094 0.5040 8 7 2.0681 -2.6656 2.4167 9 6 1.6741 -4.0668 2.5831 10 1 1.4212 -4.5503 1.6395 11 6 2.6475 -4.8815 3.4512 12 6 1.8061 -4.4476 4.6631 13 1 2.1354 -3.5096 5.1101 14 7 1.6095 -5.5107 5.6518 15 6 1.3293 -5.1968 6.9322 16 8 1.2393 -4.0319 7.2664 17 6 1.1299 -6.2719 7.9320 18 7 1.2290 -7.5423 7.5609 19 6 1.0598 -8.5264 8.4168 20 6 0.7640 -8.2705 9.7460 21 6 0.5661 -9.4083 10.7142 22 8 -0.7859 -9.4103 11.1768 23 14 0.9322 -11.0223 9.8588 24 6 0.6577 -6.9575 10.1779 25 6 0.8410 -5.9409 9.2539 26 6 0.6266 -4.2856 3.6899 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6768 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1301 -0.7207 -1.2494 36 1 2.6276 -2.2367 3.0830 37 1 3.6625 -4.4840 3.4596 38 1 2.6144 -5.9537 3.2580 39 1 1.6811 -6.4405 5.3849 40 1 1.1477 -9.5481 8.0778 41 1 1.2400 -9.2853 11.5620 42 1 -1.4419 -9.5161 10.4742 43 1 2.3255 -11.0202 9.3451 44 1 0.7412 -12.1523 10.8031 45 1 0.4325 -6.7320 11.2098 46 1 0.7608 -4.9066 9.5545 47 1 0.0387 -5.1945 3.5612 48 1 0.0122 -3.4079 3.8907 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941010_13287726.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:22:25 Heat of formation + Delta-G solvation = -81.255031 kcal Electronic energy + Delta-G solvation = -30189.818779 eV Core-core repulsion = 25826.585281 eV Total energy + Delta-G solvation = -4363.233498 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.172 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.09312 -41.81855 -40.84594 -39.62663 -37.95111 -37.82415 -35.60583 -34.99246 -33.92990 -33.16185 -32.80650 -28.37856 -28.31801 -28.09038 -26.81608 -25.92320 -25.01131 -23.97321 -23.32985 -21.94694 -21.16271 -20.78357 -19.38912 -19.14934 -18.60419 -17.94399 -17.59167 -17.24827 -17.00489 -16.69082 -16.57713 -16.41967 -16.21818 -15.93602 -15.65043 -15.42571 -15.25215 -14.87544 -14.53781 -14.40702 -14.34390 -14.28873 -13.91166 -13.57159 -13.52901 -13.41394 -13.18521 -13.10907 -12.93186 -12.88255 -12.54756 -12.54513 -12.34192 -12.18023 -11.98679 -11.71353 -11.47267 -11.41096 -11.14411 -11.06366 -10.69287 -10.56692 -10.37457 -10.27214 -10.03654 -5.00045 -0.61089 0.07017 1.10134 1.25342 1.50956 1.64892 1.69672 1.95306 1.98923 2.65046 2.93944 3.07174 3.31001 3.43185 3.47191 3.52336 3.67262 3.72656 3.77163 3.78685 3.81204 3.92960 3.93518 3.97363 4.12398 4.40523 4.41625 4.52875 4.57382 4.60251 4.63621 4.68096 4.72978 4.75357 4.80672 4.85635 4.86294 4.88054 4.93640 4.95621 4.98869 5.11235 5.24538 5.26054 5.32698 5.37328 5.47025 5.58312 6.26414 6.33115 6.60568 6.71502 7.03360 7.29348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.179 4.179 5 O -0.370 6.370 6 C 0.647 3.353 7 O -0.590 6.590 8 N -0.687 5.687 9 C 0.138 3.862 10 H 0.109 0.891 11 C -0.130 4.130 12 C 0.116 3.884 13 H 0.104 0.896 14 N -0.686 5.686 15 C 0.569 3.431 16 O -0.568 6.568 17 C 0.064 3.936 18 N -0.456 5.456 19 C 0.103 3.897 20 C -0.143 4.143 21 C -0.070 4.070 22 O -0.551 6.551 23 Si 0.775 3.225 24 C -0.055 4.055 25 C -0.117 4.117 26 C -0.160 4.160 27 H 0.059 0.941 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.416 0.584 37 H 0.096 0.904 38 H 0.129 0.871 39 H 0.423 0.577 40 H 0.190 0.810 41 H 0.118 0.882 42 H 0.397 0.603 43 H -0.278 1.278 44 H -0.297 1.297 45 H 0.159 0.841 46 H 0.147 0.853 47 H 0.110 0.890 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.833 -3.496 -1.017 3.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.090 3.910 3 C -0.195 4.195 4 C -0.236 4.236 5 O -0.285 6.285 6 C 0.401 3.599 7 O -0.480 6.480 8 N -0.346 5.346 9 C 0.033 3.967 10 H 0.127 0.873 11 C -0.168 4.168 12 C 0.011 3.989 13 H 0.122 0.878 14 N -0.337 5.337 15 C 0.355 3.645 16 O -0.446 6.446 17 C -0.074 4.074 18 N -0.167 5.167 19 C -0.056 4.056 20 C -0.146 4.146 21 C -0.181 4.181 22 O -0.359 6.359 23 Si 0.680 3.320 24 C -0.080 4.080 25 C -0.138 4.138 26 C -0.201 4.201 27 H 0.078 0.922 28 H 0.106 0.894 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.252 0.748 37 H 0.114 0.886 38 H 0.147 0.853 39 H 0.261 0.739 40 H 0.206 0.794 41 H 0.135 0.865 42 H 0.248 0.752 43 H -0.205 1.205 44 H -0.225 1.225 45 H 0.176 0.824 46 H 0.165 0.835 47 H 0.128 0.872 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.413 -3.621 -1.622 4.212 hybrid contribution 0.115 0.636 1.608 1.733 sum 1.528 -2.985 -0.015 3.354 Atomic orbital electron populations 1.22477 0.94083 1.03735 1.03453 1.22373 0.94443 0.92594 0.81553 1.21894 1.02493 0.90923 1.04203 1.22469 1.01680 1.02295 0.97194 1.86315 1.71549 1.23254 1.47361 1.18284 0.78541 0.80789 0.82307 1.90903 1.41958 1.70858 1.44314 1.44412 1.54914 1.12096 1.23156 1.21689 0.96363 0.79191 0.99408 0.87304 1.23716 0.99039 1.02627 0.91417 1.22745 0.97192 0.91959 0.87009 0.87831 1.45741 1.69243 1.11480 1.07224 1.18130 0.76281 0.87123 0.82981 1.90794 1.52799 1.20492 1.80548 1.21090 1.01626 0.91343 0.93316 1.67501 1.11923 0.99081 1.38242 1.23028 0.94980 0.98890 0.88730 1.21772 0.99651 0.96708 0.96425 1.25185 0.87775 1.04407 1.00707 1.86517 1.14527 1.96225 1.38671 0.93804 0.82535 0.72627 0.83022 1.21733 0.93971 0.91259 1.01069 1.22279 0.96756 1.02148 0.92634 1.24016 0.97466 1.03376 0.95194 0.92172 0.89375 0.91690 0.91123 0.88232 0.91364 0.91618 0.89438 0.91856 0.74765 0.88586 0.85301 0.73880 0.79358 0.86450 0.75225 1.20474 1.22492 0.82375 0.83506 0.87174 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.70 8.37 71.98 0.60 -0.10 16 2 C 0.13 0.44 1.13 -10.79 -0.01 0.42 16 3 C -0.14 0.20 8.85 71.98 0.64 0.83 16 4 C -0.18 -0.57 8.37 71.98 0.60 0.04 16 5 O -0.37 -2.28 9.94 -55.45 -0.55 -2.83 16 6 C 0.65 4.49 8.06 129.79 1.05 5.54 16 7 O -0.59 -6.91 11.48 19.82 0.23 -6.69 16 8 N -0.69 -0.50 5.27 -567.33 -2.99 -3.49 16 9 C 0.14 -0.28 4.33 45.58 0.20 -0.08 16 10 H 0.11 0.01 7.46 -2.39 -0.02 -0.01 16 11 C -0.13 0.90 7.58 31.12 0.24 1.14 16 12 C 0.12 -0.24 4.09 45.52 0.19 -0.05 16 13 H 0.10 0.12 7.50 -2.39 -0.02 0.10 16 14 N -0.69 0.52 5.35 -442.60 -2.37 -1.85 16 15 C 0.57 3.09 7.81 86.88 0.68 3.77 16 16 O -0.57 -6.97 15.94 -3.77 -0.06 -7.03 16 17 C 0.06 0.19 6.75 41.91 0.28 0.47 16 18 N -0.46 0.07 9.54 -184.92 -1.76 -1.69 16 19 C 0.10 -0.41 9.84 84.82 0.83 0.42 16 20 C -0.14 0.55 5.36 -19.70 -0.11 0.45 16 21 C -0.07 0.38 2.82 71.24 0.20 0.58 16 22 O -0.55 2.29 12.84 -148.98 -1.91 0.37 16 23 Si 0.78 -5.26 29.83 68.60 2.05 -3.21 16 24 C -0.05 0.10 9.84 22.45 0.22 0.32 16 25 C -0.12 -0.21 9.63 22.61 0.22 0.01 16 26 C -0.16 0.20 7.69 31.18 0.24 0.44 16 27 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 28 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.06 0.58 5.88 -2.39 -0.01 0.57 16 30 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.10 -0.48 8.14 -2.39 -0.02 -0.50 16 32 H 0.07 -0.09 8.14 -2.38 -0.02 -0.10 16 33 H 0.06 0.53 5.88 -2.38 -0.01 0.52 16 34 H 0.09 -0.03 8.14 -2.39 -0.02 -0.04 16 35 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 36 H 0.42 -1.14 8.81 -92.71 -0.82 -1.96 16 37 H 0.10 -0.77 8.14 -2.39 -0.02 -0.79 16 38 H 0.13 -1.38 8.11 -2.39 -0.02 -1.40 16 39 H 0.42 -1.96 8.04 -92.71 -0.75 -2.71 16 40 H 0.19 -1.88 4.92 -2.91 -0.01 -1.89 16 41 H 0.12 -0.56 7.96 -2.39 -0.02 -0.58 16 42 H 0.40 -4.78 8.70 -74.05 -0.64 -5.42 16 43 H -0.28 0.65 7.11 99.48 0.71 1.35 16 44 H -0.30 -0.44 7.11 99.48 0.71 0.27 16 45 H 0.16 -0.71 8.06 -2.91 -0.02 -0.74 16 46 H 0.15 0.33 7.64 -2.91 -0.02 0.31 16 47 H 0.11 -0.36 8.14 -2.38 -0.02 -0.38 16 48 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 Total: 0.00 -22.81 395.32 -2.46 -25.27 By element: Atomic # 1 Polarization: -11.90 SS G_CDS: -1.15 Total: -13.05 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 6.06 Total: 14.20 kcal Atomic # 7 Polarization: 0.09 SS G_CDS: -7.12 Total: -7.03 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -2.30 Total: -16.17 kcal Atomic # 14 Polarization: -5.26 SS G_CDS: 2.05 Total: -3.21 kcal Total: -22.81 -2.46 -25.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941010_13287726.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.985 kcal (2) G-P(sol) polarization free energy of solvation -22.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds