Wall clock time and date at job start Sun Mar 7 2021 00:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34658 * 124.84666 * 2 1 4 4 C 1.36775 * 108.39436 * 180.12810 * 3 2 1 5 5 C 1.47266 * 126.94359 * 179.89713 * 4 3 2 6 6 O 1.21623 * 120.00037 * 179.68795 * 5 4 3 7 7 N 1.34777 * 119.99887 * 359.68429 * 5 4 3 8 8 C 1.46496 * 120.00258 * 179.97438 * 7 5 4 9 9 H 1.09002 * 112.84597 * 336.20253 * 8 7 5 10 10 C 1.53783 * 113.61176 * 107.50310 * 8 7 5 11 11 C 1.53780 * 87.08087 * 89.12298 * 10 8 7 12 12 H 1.09004 * 113.61164 * 270.88728 * 11 10 8 13 13 N 1.46496 * 113.61780 * 139.97705 * 11 10 8 14 14 C 1.34778 * 119.99581 * 107.49948 * 13 11 10 15 15 O 1.21511 * 120.00325 * 0.02562 * 14 13 11 16 16 O 1.34634 * 119.99953 * 179.97438 * 14 13 11 17 17 C 1.45199 * 117.00182 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.47122 * 60.00597 * 17 16 14 19 19 C 1.53007 * 109.47206 * 180.02562 * 17 16 14 20 20 C 1.53002 * 109.47583 * 300.00338 * 17 16 14 21 21 C 1.53772 * 113.61760 * 205.00304 * 8 7 5 22 22 C 1.46691 * 106.11451 * 359.63883 * 4 3 2 23 23 C 1.34485 * 106.33273 * 0.21902 * 22 4 3 24 24 C 1.50697 * 125.57320 * 179.97438 * 23 22 4 25 25 O 1.42896 * 109.47091 * 150.02793 * 24 23 22 26 26 Si 1.86301 * 109.46773 * 30.02928 * 24 23 22 27 27 H 1.09003 * 109.47383 * 270.28681 * 1 2 3 28 28 H 1.08997 * 109.47520 * 30.29292 * 1 2 3 29 29 H 1.09007 * 109.47149 * 150.29042 * 1 2 3 30 30 H 1.07998 * 125.80704 * 359.97438 * 3 2 1 31 31 H 0.96999 * 120.00047 * 0.02562 * 7 5 4 32 32 H 1.09002 * 113.61009 * 203.66947 * 10 8 7 33 33 H 1.08998 * 113.61477 * 334.57012 * 10 8 7 34 34 H 0.96991 * 120.00267 * 287.50469 * 13 11 10 35 35 H 1.08991 * 109.47022 * 59.99670 * 18 17 16 36 36 H 1.08999 * 109.47052 * 180.02562 * 18 17 16 37 37 H 1.08999 * 109.46407 * 299.99929 * 18 17 16 38 38 H 1.09006 * 109.46608 * 60.00526 * 19 17 16 39 39 H 1.08999 * 109.46888 * 179.97438 * 19 17 16 40 40 H 1.08991 * 109.47273 * 300.00536 * 19 17 16 41 41 H 1.09000 * 109.46593 * 59.99224 * 20 17 16 42 42 H 1.08992 * 109.47628 * 179.97438 * 20 17 16 43 43 H 1.09003 * 109.46957 * 300.00469 * 20 17 16 44 44 H 1.09006 * 113.61862 * 25.43396 * 21 8 7 45 45 H 1.09001 * 113.61811 * 156.25393 * 21 8 7 46 46 H 1.07996 * 126.83277 * 180.26280 * 22 4 3 47 47 H 1.09003 * 109.47385 * 270.03371 * 24 23 22 48 48 H 0.96693 * 114.00079 * 299.99943 * 25 24 23 49 49 H 1.48496 * 110.00148 * 58.68367 * 26 24 23 50 50 H 1.48502 * 109.99785 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2344 1.1051 0.0000 4 6 3.5461 0.7177 -0.0029 5 6 4.7283 1.5959 -0.0061 6 8 5.8446 1.1129 -0.0027 7 7 4.5733 2.9347 -0.0127 8 6 5.7493 3.8083 -0.0153 9 1 6.6365 3.3248 0.3936 10 6 5.9928 4.5093 -1.3622 11 6 5.0875 5.6408 -0.8476 12 1 4.0315 5.4918 -1.0731 13 7 5.5630 6.9803 -1.2024 14 6 4.9180 7.6966 -2.1444 15 8 3.9420 7.2317 -2.6991 16 8 5.3547 8.9278 -2.4702 17 6 4.6111 9.6419 -3.4927 18 6 3.1631 9.8272 -3.0345 19 6 5.2517 11.0116 -3.7264 20 6 4.6351 8.8393 -4.7950 21 6 5.4815 5.2035 0.5731 22 6 3.5375 -0.7491 0.0041 23 6 2.2447 -1.1197 0.0056 24 6 1.7398 -2.5396 0.0118 25 8 0.4805 -2.5943 0.6850 26 14 2.9645 -3.6303 0.8957 27 1 -0.3634 0.0051 1.0277 28 1 -0.3634 0.8873 -0.5183 29 1 -0.3634 -0.8926 -0.5093 30 1 1.8766 2.1241 -0.0004 31 1 3.6830 3.3198 -0.0151 32 1 7.0283 4.8138 -1.5149 33 1 5.5784 3.9722 -2.2153 34 1 6.3419 7.3515 -0.7594 35 1 3.1459 10.3990 -2.1067 36 1 2.6048 10.3628 -3.8022 37 1 2.7070 8.8513 -2.8683 38 1 6.2832 10.8791 -4.0531 39 1 4.6938 11.5473 -4.4943 40 1 5.2350 11.5835 -2.7988 41 1 4.1790 7.8633 -4.6287 42 1 4.0766 9.3750 -5.5624 43 1 5.6667 8.7072 -5.1214 44 1 4.6542 5.2269 1.2825 45 1 6.3768 5.6973 0.9508 46 1 4.3981 -1.4016 0.0081 47 1 1.6187 -2.8866 -1.0144 48 1 0.5133 -2.2992 1.6052 49 1 3.1625 -3.1486 2.2863 50 1 2.4778 -5.0332 0.9092 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13941010_13287730.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:22:29 Heat of formation + Delta-G solvation = -68.193265 kcal Electronic energy + Delta-G solvation = -31256.014581 eV Core-core repulsion = 26866.036005 eV Total energy + Delta-G solvation = -4389.978576 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.188 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.49729 -41.83590 -40.92553 -39.26096 -37.95059 -37.75373 -35.42541 -34.71739 -33.87432 -33.18778 -31.28941 -28.32541 -28.28551 -27.82982 -26.87758 -26.54079 -25.74905 -23.83196 -22.99881 -21.32589 -20.98150 -20.70513 -20.40307 -19.23223 -18.95927 -17.86384 -17.51830 -17.10837 -17.06039 -16.86453 -16.79557 -16.46208 -15.83087 -15.69808 -15.47057 -15.43076 -15.29783 -15.10669 -14.71319 -14.46409 -14.32194 -14.06339 -13.87483 -13.66864 -13.54255 -13.41536 -13.31716 -13.22920 -13.13352 -13.08793 -12.84421 -12.82129 -12.45413 -12.37807 -12.22829 -11.94391 -11.94129 -11.67313 -11.28771 -10.99109 -10.96175 -10.79712 -10.20396 -9.97588 -9.58295 -9.22735 -4.92678 0.74648 1.03550 1.22140 1.44332 1.64867 1.78172 1.88434 2.02521 2.21827 2.65719 3.08780 3.13732 3.29608 3.44146 3.52392 3.73160 3.77183 3.78123 3.80753 3.84298 3.89034 3.97662 4.10277 4.17966 4.38776 4.43290 4.44804 4.50283 4.54935 4.56331 4.59651 4.63278 4.72390 4.76140 4.78369 4.83425 4.90460 4.93354 4.97250 4.98434 5.01919 5.09055 5.26736 5.36496 5.45752 5.58438 5.61364 5.68914 5.94442 6.12007 6.20748 6.42909 6.61862 7.43617 7.44290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.426 5.426 3 C 0.051 3.949 4 C -0.227 4.227 5 C 0.596 3.404 6 O -0.538 6.538 7 N -0.717 5.717 8 C 0.128 3.872 9 H 0.114 0.886 10 C -0.165 4.165 11 C 0.139 3.861 12 H 0.118 0.882 13 N -0.701 5.701 14 C 0.650 3.350 15 O -0.567 6.567 16 O -0.365 6.365 17 C 0.137 3.863 18 C -0.184 4.184 19 C -0.142 4.142 20 C -0.184 4.184 21 C -0.153 4.153 22 C -0.129 4.129 23 C -0.022 4.022 24 C -0.049 4.049 25 O -0.535 6.535 26 Si 0.711 3.289 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.170 0.830 31 H 0.398 0.602 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.407 0.593 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.104 0.896 46 H 0.158 0.842 47 H 0.122 0.878 48 H 0.376 0.624 49 H -0.257 1.257 50 H -0.254 1.254 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.899 2.852 1.071 3.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.101 5.101 3 C -0.085 4.085 4 C -0.238 4.238 5 C 0.385 3.615 6 O -0.414 6.414 7 N -0.368 5.368 8 C 0.022 3.978 9 H 0.132 0.868 10 C -0.205 4.205 11 C 0.035 3.965 12 H 0.135 0.865 13 N -0.360 5.360 14 C 0.404 3.596 15 O -0.456 6.456 16 O -0.280 6.280 17 C 0.100 3.900 18 C -0.241 4.241 19 C -0.199 4.199 20 C -0.241 4.241 21 C -0.192 4.192 22 C -0.153 4.153 23 C -0.130 4.130 24 C -0.159 4.159 25 O -0.341 6.341 26 Si 0.610 3.390 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.118 0.882 30 H 0.187 0.813 31 H 0.232 0.768 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.243 0.757 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.103 0.897 45 H 0.122 0.878 46 H 0.176 0.824 47 H 0.140 0.860 48 H 0.224 0.776 49 H -0.181 1.181 50 H -0.178 1.178 Dipole moment (debyes) X Y Z Total from point charges -2.040 1.544 0.836 2.691 hybrid contribution -1.127 1.187 0.700 1.780 sum -3.167 2.732 1.536 4.455 Atomic orbital electron populations 1.22262 0.76306 1.05194 1.03814 1.43480 1.07003 1.05016 1.54587 1.21934 0.90145 0.91785 1.04645 1.20270 0.91372 0.93968 1.18182 1.17365 0.88122 0.81044 0.74964 1.90790 1.25763 1.75049 1.49846 1.45511 1.08860 1.05711 1.76725 1.21567 0.90288 0.89434 0.96529 0.86818 1.24018 1.01298 0.96550 0.98669 1.22678 0.99930 0.78854 0.95016 0.86460 1.44753 1.33418 1.17067 1.40714 1.18181 0.81466 0.80102 0.79873 1.90907 1.27810 1.71806 1.55120 1.86309 1.57119 1.27722 1.56836 1.22113 0.91275 0.91086 0.85512 1.22517 0.95064 1.04531 1.01966 1.21880 1.01750 0.93385 1.02903 1.22520 1.02923 1.02751 0.95926 1.23797 1.03584 0.95496 0.96282 1.21627 0.94838 0.93003 1.05845 1.20813 0.90712 0.89000 1.12514 1.24772 0.92861 0.94707 1.03551 1.86574 1.29527 1.88811 1.29160 0.94228 0.85222 0.77477 0.82073 0.90668 0.89897 0.88200 0.81260 0.76770 0.88447 0.90149 0.75729 0.92142 0.90960 0.89470 0.91379 0.89951 0.91402 0.89438 0.90964 0.92099 0.89746 0.87777 0.82427 0.86020 0.77564 1.18110 1.17831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.20 9.81 59.84 0.59 0.39 16 2 N -0.43 0.28 3.09 -119.90 -0.37 -0.09 16 3 C 0.05 -0.04 10.83 -16.84 -0.18 -0.22 16 4 C -0.23 -0.39 6.29 -103.35 -0.65 -1.04 16 5 C 0.60 1.70 7.81 -12.59 -0.10 1.60 16 6 O -0.54 -3.59 16.57 5.26 0.09 -3.51 16 7 N -0.72 0.37 5.25 -54.15 -0.28 0.09 16 8 C 0.13 -0.12 4.32 -67.12 -0.29 -0.41 16 9 H 0.11 0.06 7.46 -51.93 -0.39 -0.33 16 10 C -0.17 0.14 7.68 -25.92 -0.20 -0.06 16 11 C 0.14 -0.20 4.12 -67.12 -0.28 -0.47 16 12 H 0.12 -0.06 7.47 -51.93 -0.39 -0.45 16 13 N -0.70 0.39 5.36 -57.93 -0.31 0.08 16 14 C 0.65 1.61 8.06 54.06 0.44 2.05 16 15 O -0.57 -2.65 11.48 -19.28 -0.22 -2.87 16 16 O -0.37 -0.82 9.94 -40.31 -0.40 -1.22 16 17 C 0.14 0.17 1.13 -90.61 -0.10 0.06 16 18 C -0.18 -0.20 8.37 37.16 0.31 0.11 16 19 C -0.14 0.11 8.85 37.16 0.33 0.44 16 20 C -0.18 -0.25 8.37 37.16 0.31 0.07 16 21 C -0.15 0.48 7.58 -25.92 -0.20 0.28 16 22 C -0.13 -0.20 9.49 -37.50 -0.36 -0.56 16 23 C -0.02 -0.01 6.14 -81.87 -0.50 -0.51 16 24 C -0.05 0.05 2.87 36.00 0.10 0.15 16 25 O -0.53 0.38 10.31 -35.23 -0.36 0.02 16 26 Si 0.71 -0.68 31.12 -169.99 -5.29 -5.97 16 27 H 0.07 -0.30 8.14 -51.93 -0.42 -0.72 16 28 H 0.08 -0.37 8.13 -51.93 -0.42 -0.79 16 29 H 0.10 -0.23 6.73 -51.93 -0.35 -0.58 16 30 H 0.17 -0.70 7.45 -52.49 -0.39 -1.09 16 31 H 0.40 -1.19 7.64 -40.82 -0.31 -1.50 16 32 H 0.10 -0.13 8.14 -51.93 -0.42 -0.55 16 33 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 34 H 0.41 -1.05 8.84 -40.82 -0.36 -1.41 16 35 H 0.06 0.05 8.14 -51.93 -0.42 -0.37 16 36 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 37 H 0.09 0.27 5.88 -51.93 -0.31 -0.04 16 38 H 0.07 -0.05 8.14 -51.93 -0.42 -0.48 16 39 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 40 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 41 H 0.09 0.30 5.88 -51.93 -0.31 0.00 16 42 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 43 H 0.06 0.07 8.14 -51.93 -0.42 -0.35 16 44 H 0.08 -0.30 8.14 -51.93 -0.42 -0.72 16 45 H 0.10 -0.44 8.12 -51.93 -0.42 -0.86 16 46 H 0.16 0.09 6.89 -52.49 -0.36 -0.27 16 47 H 0.12 -0.19 7.96 -51.93 -0.41 -0.61 16 48 H 0.38 -1.12 8.70 45.56 0.40 -0.73 16 49 H -0.26 -0.45 7.11 56.52 0.40 -0.04 16 50 H -0.25 -0.45 7.11 56.52 0.40 -0.05 16 LS Contribution 405.76 15.07 6.11 6.11 Total: 0.00 -10.05 405.76 -9.68 -19.73 By element: Atomic # 1 Polarization: -6.38 SS G_CDS: -7.87 Total: -14.25 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -0.78 Total: 1.87 kcal Atomic # 7 Polarization: 1.05 SS G_CDS: -0.96 Total: 0.09 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.90 Total: -7.58 kcal Atomic # 14 Polarization: -0.68 SS G_CDS: -5.29 Total: -5.97 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -10.05 -9.68 -19.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941010_13287730.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.459 kcal (2) G-P(sol) polarization free energy of solvation -10.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds