Wall clock time and date at job start Sun Mar 7 2021 00:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36425 * 125.80208 * 2 1 4 4 C 1.47375 * 127.18825 * 359.96553 * 3 2 1 5 5 O 1.21614 * 120.00508 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99501 * 180.02562 * 4 3 2 7 7 C 1.46506 * 119.99625 * 179.97438 * 6 4 3 8 8 H 1.09000 * 112.90924 * 23.74668 * 7 6 4 9 9 C 1.53782 * 113.61308 * 154.99848 * 7 6 4 10 10 C 1.53784 * 87.08406 * 89.11317 * 9 7 6 11 11 H 1.08999 * 113.61582 * 270.80162 * 10 9 7 12 12 N 1.46497 * 113.61577 * 139.97674 * 10 9 7 13 13 C 1.34777 * 119.99707 * 154.99991 * 12 10 9 14 14 O 1.21507 * 120.00068 * 0.02562 * 13 12 10 15 15 O 1.34644 * 119.99419 * 179.97438 * 13 12 10 16 16 C 1.45206 * 116.99182 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47226 * 60.00595 * 16 15 13 18 18 C 1.52992 * 109.47178 * 300.00057 * 16 15 13 19 19 C 1.53006 * 109.46497 * 180.02562 * 16 15 13 20 20 C 1.53780 * 113.61219 * 252.49469 * 7 6 4 21 21 C 1.47013 * 105.61220 * 180.22510 * 3 2 1 22 22 C 1.34178 * 105.96006 * 359.63145 * 21 3 2 23 23 C 1.50695 * 125.43889 * 180.12850 * 22 21 3 24 24 O 1.42895 * 109.47760 * 65.26450 * 23 22 21 25 25 Si 1.86304 * 109.46798 * 185.26606 * 23 22 21 26 26 O 1.33649 * 125.80518 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.46892 * 89.99526 * 1 2 3 28 28 H 1.08989 * 109.47045 * 209.99720 * 1 2 3 29 29 H 1.08999 * 109.46914 * 330.00449 * 1 2 3 30 30 H 0.97000 * 120.00581 * 359.97438 * 6 4 3 31 31 H 1.09001 * 113.61436 * 334.56692 * 9 7 6 32 32 H 1.08999 * 113.69211 * 203.67105 * 9 7 6 33 33 H 0.97000 * 119.99727 * 335.01055 * 12 10 9 34 34 H 1.09002 * 109.47153 * 299.99431 * 17 16 15 35 35 H 1.09001 * 109.46832 * 179.97438 * 17 16 15 36 36 H 1.09004 * 109.47261 * 59.99603 * 17 16 15 37 37 H 1.09001 * 109.47066 * 180.02562 * 18 16 15 38 38 H 1.08996 * 109.47747 * 300.00217 * 18 16 15 39 39 H 1.09002 * 109.47103 * 60.00629 * 18 16 15 40 40 H 1.08993 * 109.46955 * 300.00264 * 19 16 15 41 41 H 1.09000 * 109.47050 * 60.00093 * 19 16 15 42 42 H 1.09001 * 109.47002 * 179.97438 * 19 16 15 43 43 H 1.09003 * 113.61305 * 156.33817 * 20 7 6 44 44 H 1.09002 * 113.61833 * 25.43396 * 20 7 6 45 45 H 1.08010 * 127.01759 * 179.74513 * 21 3 2 46 46 H 1.09003 * 109.47118 * 305.26109 * 23 22 21 47 47 H 0.96693 * 114.00378 * 180.02562 * 24 23 22 48 48 H 1.48493 * 110.00153 * 299.99449 * 25 23 22 49 49 H 1.48502 * 110.00175 * 61.31962 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3051 1.1065 0.0000 4 6 1.8740 2.5157 -0.0007 5 8 0.6890 2.7892 -0.0019 6 7 2.7931 3.5015 -0.0011 7 6 2.3645 4.9025 -0.0024 8 1 1.3614 5.0398 0.4014 9 6 3.4053 5.8656 0.5928 10 6 3.9882 5.9870 -0.8251 11 1 4.7518 5.2421 -1.0486 12 7 4.4015 7.3482 -1.1751 13 6 5.3498 7.5444 -2.1125 14 8 5.8615 6.5924 -2.6677 15 8 5.7293 8.7955 -2.4345 16 6 6.7552 8.9314 -3.4530 17 6 6.2647 8.3019 -4.7583 18 6 8.0293 8.2212 -2.9915 19 6 7.0531 10.4147 -3.6820 20 6 2.5902 5.6144 -1.3467 21 6 3.6849 0.5991 -0.0056 22 6 3.5859 -0.7390 0.0000 23 6 4.7459 -1.7010 0.0001 24 8 5.4764 -1.5664 1.2208 25 14 4.1069 -3.4443 -0.1523 26 8 2.2889 -1.0839 -0.0005 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5137 29 1 -0.3633 0.8900 0.5138 30 1 3.7383 3.2835 -0.0006 31 1 4.0821 5.3919 1.3039 32 1 2.9773 6.7944 0.9699 33 1 3.9928 8.1082 -0.7321 34 1 6.0528 7.2452 -4.5949 35 1 7.0347 8.4043 -5.5230 36 1 5.3569 8.8079 -5.0872 37 1 8.7996 8.3237 -3.7558 38 1 8.3788 8.6697 -2.0616 39 1 7.8174 7.1646 -2.8281 40 1 6.1455 10.9209 -4.0106 41 1 7.4027 10.8628 -2.7519 42 1 7.8236 10.5168 -4.4462 43 1 1.9380 6.4743 -1.5003 44 1 2.6089 4.9381 -2.2013 45 1 4.5928 1.1841 -0.0109 46 1 5.4017 -1.4795 -0.8420 47 1 6.2392 -2.1566 1.2898 48 1 3.2116 -3.7588 0.9899 49 1 3.3725 -3.6060 -1.4329 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941010_13308374.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:22:42 Heat of formation + Delta-G solvation = -106.283009 kcal Electronic energy + Delta-G solvation = -31535.342567 eV Core-core repulsion = 27045.993634 eV Total energy + Delta-G solvation = -4489.348933 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.176 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.93159 -41.98483 -41.18096 -39.62905 -37.97207 -37.89242 -35.62710 -34.94491 -34.34485 -33.46721 -32.98276 -29.56223 -28.39047 -28.32209 -26.83949 -26.66057 -25.55092 -24.32521 -23.20162 -22.47538 -21.28547 -20.97573 -20.40819 -19.18655 -18.79017 -18.56828 -17.89121 -17.43262 -17.22934 -17.21269 -17.04644 -16.59356 -16.06239 -15.87042 -15.82822 -15.67792 -15.41138 -15.06078 -14.68724 -14.53009 -14.35813 -14.21108 -14.19211 -14.02525 -13.86330 -13.58139 -13.38324 -13.20291 -13.16658 -13.13866 -12.93275 -12.88766 -12.62939 -12.56856 -12.32316 -12.22865 -12.00061 -11.71045 -11.41638 -11.26713 -11.13607 -11.06928 -10.48351 -10.31338 -10.12799 -9.70359 -5.10182 0.06732 0.69439 1.14828 1.14953 1.38539 1.62309 1.70371 1.98178 2.00129 2.10926 3.11822 3.12375 3.30167 3.43772 3.58664 3.60513 3.65190 3.72059 3.76720 3.79775 3.92302 3.92863 4.01852 4.22812 4.34699 4.39994 4.44046 4.52443 4.53037 4.59117 4.62814 4.63070 4.67192 4.74375 4.76316 4.80086 4.82638 4.85575 4.90829 4.92940 5.00327 5.09411 5.09663 5.22942 5.24873 5.32622 5.49060 5.57110 5.75392 6.34095 6.38197 6.83026 7.03423 7.31243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.076 3.924 3 C -0.265 4.265 4 C 0.596 3.404 5 O -0.568 6.568 6 N -0.696 5.696 7 C 0.121 3.879 8 H 0.105 0.895 9 C -0.131 4.131 10 C 0.139 3.861 11 H 0.107 0.893 12 N -0.688 5.688 13 C 0.643 3.357 14 O -0.594 6.594 15 O -0.370 6.370 16 C 0.127 3.873 17 C -0.180 4.180 18 C -0.180 4.180 19 C -0.138 4.138 20 C -0.162 4.162 21 C -0.140 4.140 22 C -0.037 4.037 23 C -0.036 4.036 24 O -0.559 6.559 25 Si 0.806 3.194 26 O -0.193 6.193 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.413 0.587 31 H 0.096 0.904 32 H 0.127 0.873 33 H 0.419 0.581 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.107 0.893 44 H 0.060 0.940 45 H 0.185 0.815 46 H 0.128 0.872 47 H 0.414 0.586 48 H -0.308 1.308 49 H -0.296 1.296 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.776 0.697 0.643 5.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.023 3.977 3 C -0.269 4.269 4 C 0.385 3.615 5 O -0.449 6.449 6 N -0.346 5.346 7 C 0.015 3.985 8 H 0.123 0.877 9 C -0.169 4.169 10 C 0.035 3.965 11 H 0.125 0.875 12 N -0.348 5.348 13 C 0.396 3.604 14 O -0.485 6.485 15 O -0.284 6.284 16 C 0.091 3.909 17 C -0.238 4.238 18 C -0.237 4.237 19 C -0.195 4.195 20 C -0.202 4.202 21 C -0.159 4.159 22 C -0.084 4.084 23 C -0.146 4.146 24 O -0.371 6.371 25 Si 0.712 3.288 26 O -0.091 6.091 27 H 0.118 0.882 28 H 0.111 0.889 29 H 0.122 0.878 30 H 0.249 0.751 31 H 0.114 0.886 32 H 0.145 0.855 33 H 0.257 0.743 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.117 0.883 43 H 0.126 0.874 44 H 0.079 0.921 45 H 0.202 0.798 46 H 0.146 0.854 47 H 0.268 0.732 48 H -0.236 1.236 49 H -0.223 1.223 Dipole moment (debyes) X Y Z Total from point charges 4.065 0.143 0.358 4.083 hybrid contribution 0.004 0.681 -0.063 0.684 sum 4.069 0.824 0.296 4.162 Atomic orbital electron populations 1.20728 0.82387 1.05576 1.05301 1.23349 0.94955 0.82999 0.96355 1.21258 0.94107 0.93664 1.17897 1.17205 0.85248 0.84060 0.75018 1.90755 1.17732 1.84356 1.52016 1.45374 1.09917 1.05006 1.74346 1.21684 1.00165 0.79458 0.97183 0.87662 1.23732 0.97190 1.00695 0.95323 1.22672 0.95389 0.82211 0.96231 0.87471 1.44728 1.39673 1.10219 1.40156 1.18439 0.79902 0.81870 0.80145 1.90899 1.58774 1.42771 1.56039 1.86319 1.56490 1.28198 1.57427 1.22344 0.85100 0.98254 0.85185 1.22476 1.02505 1.02181 0.96598 1.22470 0.96700 1.01879 1.02636 1.21895 1.03287 0.90705 1.03634 1.24003 0.97331 1.01135 0.97717 1.22851 0.96627 0.93269 1.03190 1.21837 0.82277 0.95500 1.08763 1.23951 0.91450 1.07215 0.91950 1.86406 1.47101 1.67340 1.36242 0.94345 0.82904 0.75707 0.75834 1.83698 1.17448 1.35889 1.72072 0.88170 0.88897 0.87752 0.75061 0.88590 0.85524 0.74330 0.91809 0.89476 0.92093 0.89512 0.91842 0.91686 0.91264 0.91090 0.88343 0.87436 0.92135 0.79769 0.85414 0.73241 1.23606 1.22331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 9.89 71.24 0.70 0.33 16 2 C 0.08 0.66 7.37 25.26 0.19 0.85 16 3 C -0.26 -2.02 6.31 -18.99 -0.12 -2.14 16 4 C 0.60 4.61 7.81 86.65 0.68 5.29 16 5 O -0.57 -7.54 14.45 -4.08 -0.06 -7.60 16 6 N -0.70 -0.63 5.26 -443.33 -2.33 -2.96 16 7 C 0.12 -0.17 4.32 45.52 0.20 0.03 16 8 H 0.11 0.13 7.47 -2.39 -0.02 0.11 16 9 C -0.13 0.89 7.58 31.12 0.24 1.12 16 10 C 0.14 -0.33 4.12 45.52 0.19 -0.14 16 11 H 0.11 0.04 7.46 -2.39 -0.02 0.02 16 12 N -0.69 0.69 5.36 -567.59 -3.04 -2.36 16 13 C 0.64 3.74 8.06 129.79 1.05 4.78 16 14 O -0.59 -6.58 11.48 19.82 0.23 -6.35 16 15 O -0.37 -1.81 9.94 -55.53 -0.55 -2.36 16 16 C 0.13 0.33 1.13 -10.79 -0.01 0.32 16 17 C -0.18 -0.58 8.37 71.98 0.60 0.02 16 18 C -0.18 -0.46 8.37 71.98 0.60 0.15 16 19 C -0.14 0.32 8.85 71.98 0.64 0.96 16 20 C -0.16 0.15 7.68 31.12 0.24 0.39 16 21 C -0.14 -0.55 10.48 23.65 0.25 -0.31 16 22 C -0.04 -0.21 6.22 24.76 0.15 -0.05 16 23 C -0.04 0.08 2.96 71.23 0.21 0.29 16 24 O -0.56 1.66 12.86 -148.98 -1.92 -0.25 16 25 Si 0.81 -1.36 32.09 68.60 2.20 0.84 16 26 O -0.19 -1.86 8.90 4.54 0.04 -1.82 16 27 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.10 0.66 6.49 -2.39 -0.02 0.64 16 30 H 0.41 -1.35 7.87 -92.71 -0.73 -2.08 16 31 H 0.10 -0.75 8.14 -2.39 -0.02 -0.77 16 32 H 0.13 -1.32 8.12 -2.39 -0.02 -1.34 16 33 H 0.42 -2.46 8.84 -92.71 -0.82 -3.28 16 34 H 0.06 0.54 5.88 -2.39 -0.01 0.53 16 35 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 36 H 0.06 0.17 8.14 -2.38 -0.02 0.15 16 37 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 38 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.06 0.49 5.88 -2.39 -0.01 0.48 16 40 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 41 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 42 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 43 H 0.11 -0.29 8.14 -2.39 -0.02 -0.31 16 44 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 45 H 0.19 -0.42 7.74 -2.91 -0.02 -0.45 16 46 H 0.13 -1.08 7.96 -2.39 -0.02 -1.10 16 47 H 0.41 -5.97 8.74 -74.06 -0.65 -6.62 16 48 H -0.31 -2.46 7.11 99.48 0.71 -1.75 16 49 H -0.30 -1.56 7.11 99.48 0.71 -0.85 16 Total: 0.00 -27.28 404.22 -0.79 -28.07 By element: Atomic # 1 Polarization: -15.94 SS G_CDS: -1.16 Total: -17.09 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 5.80 Total: 11.89 kcal Atomic # 7 Polarization: 0.05 SS G_CDS: -5.37 Total: -5.32 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -2.26 Total: -18.39 kcal Atomic # 14 Polarization: -1.36 SS G_CDS: 2.20 Total: 0.84 kcal Total: -27.28 -0.79 -28.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941010_13308374.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.212 kcal (2) G-P(sol) polarization free energy of solvation -27.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds