Wall clock time and date at job start Sun Mar 7 2021 00:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37871 * 126.46168 * 2 1 4 4 C 1.46678 * 126.22768 * 359.96502 * 3 2 1 5 5 O 1.21697 * 120.00518 * 359.97438 * 4 3 2 6 6 N 1.34781 * 119.99776 * 179.97438 * 4 3 2 7 7 C 1.46498 * 119.99908 * 179.97438 * 6 4 3 8 8 H 1.09002 * 112.85155 * 25.33185 * 7 6 4 9 9 C 1.53788 * 113.61369 * 156.53025 * 7 6 4 10 10 C 1.53779 * 87.07891 * 139.98181 * 9 7 6 11 11 H 1.09001 * 113.61231 * 220.02180 * 10 9 7 12 12 N 1.46490 * 113.61708 * 89.11841 * 10 9 7 13 13 C 1.34782 * 120.00339 * 154.99961 * 12 10 9 14 14 O 1.21511 * 119.99760 * 359.97438 * 13 12 10 15 15 O 1.34636 * 120.00110 * 180.02562 * 13 12 10 16 16 C 1.45203 * 116.99955 * 179.97438 * 15 13 12 17 17 C 1.52991 * 109.47306 * 59.99378 * 16 15 13 18 18 C 1.52999 * 109.47324 * 179.97438 * 16 15 13 19 19 C 1.53006 * 109.46875 * 299.99420 * 16 15 13 20 20 C 1.53781 * 113.61634 * 254.13397 * 7 6 4 21 21 N 1.37643 * 107.53796 * 179.97438 * 3 2 1 22 22 C 1.35535 * 108.64368 * 0.02562 * 21 3 2 23 23 C 1.50707 * 125.56576 * 179.73483 * 22 21 3 24 24 O 1.42906 * 109.46894 * 300.00244 * 23 22 21 25 25 Si 1.86298 * 109.47145 * 180.02562 * 23 22 21 26 26 C 1.35452 * 108.86987 * 0.02562 * 22 21 3 27 27 H 1.09005 * 109.46775 * 89.99361 * 1 2 3 28 28 H 1.09000 * 109.47241 * 209.99411 * 1 2 3 29 29 H 1.09002 * 109.46838 * 329.99833 * 1 2 3 30 30 H 0.96998 * 119.99678 * 359.97438 * 6 4 3 31 31 H 1.09000 * 113.61415 * 254.52976 * 9 7 6 32 32 H 1.09000 * 113.61024 * 25.34590 * 9 7 6 33 33 H 0.96997 * 120.00408 * 334.99816 * 12 10 9 34 34 H 1.09009 * 109.47131 * 60.00100 * 17 16 15 35 35 H 1.08999 * 109.47418 * 180.02562 * 17 16 15 36 36 H 1.08999 * 109.47351 * 300.00656 * 17 16 15 37 37 H 1.08997 * 109.47159 * 59.99467 * 18 16 15 38 38 H 1.08994 * 109.47436 * 179.97438 * 18 16 15 39 39 H 1.09007 * 109.46818 * 300.00092 * 18 16 15 40 40 H 1.09007 * 109.46942 * 59.99989 * 19 16 15 41 41 H 1.08999 * 109.46926 * 179.97438 * 19 16 15 42 42 H 1.08997 * 109.47249 * 300.00314 * 19 16 15 43 43 H 1.09002 * 113.61483 * 334.57769 * 20 7 6 44 44 H 1.08997 * 113.61199 * 105.46600 * 20 7 6 45 45 H 0.97004 * 125.68077 * 180.02562 * 21 3 2 46 46 H 1.08997 * 109.46809 * 60.00085 * 23 22 21 47 47 H 0.96700 * 113.99781 * 300.00238 * 24 23 22 48 48 H 1.48504 * 109.99873 * 58.67838 * 25 23 22 49 49 H 1.48499 * 109.99943 * 180.02562 * 25 23 22 50 50 H 1.08002 * 126.06333 * 179.97438 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3264 1.1088 0.0000 4 6 1.8899 2.5092 -0.0007 5 8 0.7027 2.7766 -0.0019 6 7 2.8038 3.4998 -0.0001 7 6 2.3679 4.8985 -0.0014 8 1 1.3747 5.0327 0.4271 9 6 3.4180 5.8715 0.5606 10 6 3.0081 6.8386 -0.5625 11 1 3.8492 7.3642 -1.0147 12 7 1.9080 7.7332 -0.1943 13 6 1.7668 8.9198 -0.8177 14 8 2.5522 9.2477 -1.6849 15 8 0.7560 9.7421 -0.4789 16 6 0.6657 11.0040 -1.1916 17 6 0.4920 10.7336 -2.6874 18 6 -0.5361 11.7971 -0.6742 19 6 1.9458 11.8107 -0.9644 20 6 2.5541 5.6005 -1.3569 21 7 3.6284 0.6624 0.0006 22 6 3.6218 -0.6929 0.0004 23 6 4.8434 -1.5754 -0.0048 24 8 5.6192 -1.3080 -1.1748 25 14 4.3182 -3.3629 -0.0038 26 6 2.3379 -1.1247 -0.0009 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5137 29 1 -0.3633 0.8900 0.5139 30 1 3.7501 3.2867 0.0012 31 1 3.1830 6.2380 1.5599 32 1 4.4416 5.5073 0.4732 33 1 1.2812 7.4716 0.4982 34 1 -0.4200 10.1588 -2.8492 35 1 0.4246 11.6808 -3.2224 36 1 1.3478 10.1684 -3.0563 37 1 -0.4127 11.9897 0.3915 38 1 -0.6036 12.7445 -1.2089 39 1 -1.4479 11.2221 -0.8363 40 1 2.8017 11.2455 -1.3333 41 1 1.8781 12.7578 -1.4998 42 1 2.0696 12.0034 0.1012 43 1 3.3412 5.1628 -1.9709 44 1 1.6227 5.7486 -1.9034 45 1 4.4192 1.2243 0.0011 46 1 5.4424 -1.3718 0.8827 47 1 5.1482 -1.4678 -2.0040 48 1 3.4744 -3.6450 -1.1928 49 1 5.5139 -4.2435 -0.0082 50 1 2.0136 -2.1549 -0.0018 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13941010_13940406.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:23:12 Heat of formation + Delta-G solvation = -79.826690 kcal Electronic energy + Delta-G solvation = -31217.688929 eV Core-core repulsion = 26827.205890 eV Total energy + Delta-G solvation = -4390.483039 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.188 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.63238 -41.90400 -40.93537 -39.49218 -37.96271 -37.76170 -35.53046 -34.94977 -33.67888 -33.13521 -31.59333 -28.31897 -28.28068 -28.18564 -27.38262 -26.99937 -25.58484 -23.64951 -22.56346 -21.63730 -21.15339 -20.98169 -20.24504 -19.53138 -19.23037 -18.21794 -17.75819 -17.32093 -17.03545 -16.78896 -16.65909 -16.40398 -16.06492 -15.57230 -15.48507 -15.33362 -15.13063 -14.98308 -14.61808 -14.41643 -14.31566 -13.96990 -13.92728 -13.71285 -13.62147 -13.50450 -13.43495 -13.22931 -13.09438 -12.93944 -12.84945 -12.81942 -12.45650 -12.26854 -12.25402 -12.06253 -11.90525 -11.79764 -11.29571 -11.11048 -10.98201 -10.84776 -10.34331 -10.13914 -9.84583 -9.18859 -5.00573 0.33099 1.08209 1.13000 1.52488 1.57547 1.79992 1.84915 1.97907 2.12673 2.31566 3.05614 3.14711 3.16029 3.31762 3.48086 3.66238 3.74257 3.78300 3.83656 3.84209 3.97907 4.13054 4.18098 4.33534 4.35600 4.42008 4.46084 4.57528 4.62304 4.64035 4.68815 4.72657 4.79119 4.81380 4.83376 4.86606 4.91164 4.93891 5.00919 5.09511 5.17950 5.21126 5.33183 5.37112 5.43009 5.47073 5.59208 5.62906 5.88264 6.16724 6.21983 6.36489 6.39694 7.09624 7.40224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.063 4.063 3 C -0.058 4.058 4 C 0.592 3.408 5 O -0.520 6.520 6 N -0.723 5.723 7 C 0.125 3.875 8 H 0.119 0.881 9 C -0.152 4.152 10 C 0.143 3.857 11 H 0.115 0.885 12 N -0.696 5.696 13 C 0.654 3.346 14 O -0.564 6.564 15 O -0.363 6.363 16 C 0.137 3.863 17 C -0.184 4.184 18 C -0.142 4.142 19 C -0.184 4.184 20 C -0.165 4.165 21 N -0.524 5.524 22 C 0.028 3.972 23 C -0.061 4.061 24 O -0.535 6.535 25 Si 0.717 3.283 26 C -0.200 4.200 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.395 0.605 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.408 0.592 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.097 0.903 44 H 0.081 0.919 45 H 0.416 0.584 46 H 0.120 0.880 47 H 0.380 0.620 48 H -0.255 1.255 49 H -0.255 1.255 50 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.331 -1.215 3.029 3.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.071 4.071 3 C -0.170 4.170 4 C 0.380 3.620 5 O -0.396 6.396 6 N -0.374 5.374 7 C 0.020 3.980 8 H 0.137 0.863 9 C -0.191 4.191 10 C 0.037 3.963 11 H 0.133 0.867 12 N -0.355 5.355 13 C 0.408 3.592 14 O -0.453 6.453 15 O -0.278 6.278 16 C 0.100 3.900 17 C -0.242 4.242 18 C -0.199 4.199 19 C -0.241 4.241 20 C -0.205 4.205 21 N -0.121 5.121 22 C -0.090 4.090 23 C -0.170 4.170 24 O -0.341 6.341 25 Si 0.615 3.385 26 C -0.224 4.224 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.229 0.771 31 H 0.105 0.895 32 H 0.122 0.878 33 H 0.243 0.757 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.116 0.884 44 H 0.099 0.901 45 H 0.254 0.746 46 H 0.138 0.862 47 H 0.229 0.771 48 H -0.179 1.179 49 H -0.180 1.180 50 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.387 -1.216 2.594 3.183 hybrid contribution 0.870 0.668 -0.813 1.365 sum 2.257 -0.548 1.781 2.927 Atomic orbital electron populations 1.20401 0.88826 1.03318 1.02534 1.19948 0.96059 0.90334 1.00778 1.20222 0.83564 0.93503 1.19747 1.17068 0.85906 0.83014 0.75997 1.90843 1.15899 1.83142 1.49697 1.45855 1.09196 1.06019 1.76337 1.22664 0.99649 0.78717 0.96986 0.86313 1.23779 1.00283 0.95457 0.99610 1.21600 0.89433 0.88950 0.96301 0.86664 1.44348 1.32540 1.16378 1.42208 1.18043 0.80034 0.80828 0.80319 1.90920 1.45536 1.75334 1.33484 1.86312 1.48199 1.30527 1.62776 1.22135 0.96931 0.79233 0.91681 1.22524 1.03905 1.03489 0.94237 1.21880 0.96212 0.99457 1.02369 1.22525 0.98238 1.00827 1.02525 1.24038 1.03448 0.95608 0.97420 1.41840 1.07107 1.06571 1.56583 1.21046 0.96817 0.83282 1.07856 1.24911 0.91823 1.09134 0.91175 1.86595 1.42079 1.89519 1.15900 0.94247 0.82101 0.72437 0.89690 1.20614 0.90822 0.99152 1.11829 0.91294 0.91486 0.90003 0.77087 0.89478 0.87771 0.75678 0.92068 0.90900 0.89446 0.91376 0.89903 0.91343 0.89449 0.90900 0.92096 0.88437 0.90058 0.74633 0.86179 0.77142 1.17887 1.17989 0.83185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.14 9.83 36.01 0.35 0.22 16 2 C -0.06 -0.11 6.21 -104.16 -0.65 -0.76 16 3 C -0.06 -0.07 7.06 -81.98 -0.58 -0.65 16 4 C 0.59 1.09 7.79 -12.85 -0.10 0.99 16 5 O -0.52 -2.67 14.42 5.19 0.07 -2.59 16 6 N -0.72 1.10 5.36 -54.32 -0.29 0.81 16 7 C 0.12 -0.21 4.09 -67.12 -0.27 -0.48 16 8 H 0.12 -0.03 7.50 -51.93 -0.39 -0.42 16 9 C -0.15 0.54 7.58 -25.92 -0.20 0.34 16 10 C 0.14 -0.20 4.33 -67.04 -0.29 -0.49 16 11 H 0.12 -0.04 7.47 -51.93 -0.39 -0.43 16 12 N -0.70 0.14 5.26 -57.85 -0.30 -0.16 16 13 C 0.65 1.80 8.06 54.06 0.44 2.24 16 14 O -0.56 -2.80 11.48 -19.28 -0.22 -3.02 16 15 O -0.36 -0.92 9.94 -40.31 -0.40 -1.32 16 16 C 0.14 0.20 1.13 -90.62 -0.10 0.10 16 17 C -0.18 -0.29 8.37 37.15 0.31 0.03 16 18 C -0.14 0.07 8.85 37.16 0.33 0.40 16 19 C -0.18 -0.24 8.37 37.16 0.31 0.07 16 20 C -0.16 0.20 7.69 -25.83 -0.20 0.00 16 21 N -0.52 0.63 5.99 -5.69 -0.03 0.60 16 22 C 0.03 -0.02 6.47 -81.95 -0.53 -0.55 16 23 C -0.06 0.12 3.08 36.01 0.11 0.23 16 24 O -0.53 0.37 12.88 -35.23 -0.45 -0.08 16 25 Si 0.72 -1.64 30.54 -169.99 -5.19 -6.83 16 26 C -0.20 0.00 9.27 -39.98 -0.37 -0.38 16 27 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16 28 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 29 H 0.08 0.24 6.49 -51.93 -0.34 -0.09 16 30 H 0.40 -1.63 7.84 -40.82 -0.32 -1.95 16 31 H 0.09 -0.33 8.14 -51.93 -0.42 -0.75 16 32 H 0.10 -0.52 8.11 -51.93 -0.42 -0.94 16 33 H 0.41 -0.76 8.81 -40.82 -0.36 -1.12 16 34 H 0.06 0.09 8.14 -51.92 -0.42 -0.34 16 35 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 36 H 0.09 0.32 5.88 -51.93 -0.31 0.01 16 37 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 38 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 39 H 0.07 -0.04 8.14 -51.92 -0.42 -0.46 16 40 H 0.09 0.29 5.88 -51.92 -0.31 -0.01 16 41 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 42 H 0.06 0.06 8.14 -51.93 -0.42 -0.36 16 43 H 0.10 -0.18 8.14 -51.93 -0.42 -0.60 16 44 H 0.08 0.06 8.14 -51.93 -0.42 -0.37 16 45 H 0.42 -1.50 8.19 -40.82 -0.33 -1.84 16 46 H 0.12 -0.36 7.96 -51.93 -0.41 -0.77 16 47 H 0.38 -1.14 8.70 45.56 0.40 -0.75 16 48 H -0.25 0.01 7.11 56.52 0.40 0.41 16 49 H -0.26 -0.22 7.11 56.52 0.40 0.18 16 50 H 0.15 -0.27 6.17 -52.49 -0.32 -0.59 16 LS Contribution 404.95 15.07 6.10 6.10 Total: 0.00 -9.10 404.95 -9.93 -19.03 By element: Atomic # 1 Polarization: -6.06 SS G_CDS: -7.77 Total: -13.83 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -1.44 Total: 1.30 kcal Atomic # 7 Polarization: 1.87 SS G_CDS: -0.63 Total: 1.24 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -1.00 Total: -7.02 kcal Atomic # 14 Polarization: -1.64 SS G_CDS: -5.19 Total: -6.83 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -9.10 -9.93 -19.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941010_13940406.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.797 kcal (2) G-P(sol) polarization free energy of solvation -9.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds