Wall clock time and date at job start Sun Mar 7 2021 00:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37871 * 126.46168 * 2 1 4 4 C 1.46678 * 126.22768 * 359.96502 * 3 2 1 5 5 O 1.21697 * 120.00518 * 359.97438 * 4 3 2 6 6 N 1.34781 * 119.99776 * 179.97438 * 4 3 2 7 7 C 1.46498 * 119.99908 * 179.97438 * 6 4 3 8 8 H 1.09002 * 112.85155 * 25.33185 * 7 6 4 9 9 C 1.53788 * 113.61369 * 156.53025 * 7 6 4 10 10 C 1.53779 * 87.07891 * 139.98181 * 9 7 6 11 11 H 1.09001 * 113.61231 * 220.02180 * 10 9 7 12 12 N 1.46490 * 113.61708 * 89.11841 * 10 9 7 13 13 C 1.34782 * 120.00339 * 154.99961 * 12 10 9 14 14 O 1.21511 * 119.99760 * 359.97438 * 13 12 10 15 15 O 1.34636 * 120.00110 * 180.02562 * 13 12 10 16 16 C 1.45203 * 116.99955 * 179.97438 * 15 13 12 17 17 C 1.52991 * 109.47306 * 59.99378 * 16 15 13 18 18 C 1.52999 * 109.47324 * 179.97438 * 16 15 13 19 19 C 1.53006 * 109.46875 * 299.99420 * 16 15 13 20 20 C 1.53781 * 113.61634 * 254.13397 * 7 6 4 21 21 N 1.37643 * 107.53796 * 179.97438 * 3 2 1 22 22 C 1.35535 * 108.64368 * 0.02562 * 21 3 2 23 23 C 1.50707 * 125.56576 * 179.73483 * 22 21 3 24 24 O 1.42906 * 109.46894 * 300.00244 * 23 22 21 25 25 Si 1.86298 * 109.47145 * 180.02562 * 23 22 21 26 26 C 1.35452 * 108.86987 * 0.02562 * 22 21 3 27 27 H 1.09005 * 109.46775 * 89.99361 * 1 2 3 28 28 H 1.09000 * 109.47241 * 209.99411 * 1 2 3 29 29 H 1.09002 * 109.46838 * 329.99833 * 1 2 3 30 30 H 0.96998 * 119.99678 * 359.97438 * 6 4 3 31 31 H 1.09000 * 113.61415 * 254.52976 * 9 7 6 32 32 H 1.09000 * 113.61024 * 25.34590 * 9 7 6 33 33 H 0.96997 * 120.00408 * 334.99816 * 12 10 9 34 34 H 1.09009 * 109.47131 * 60.00100 * 17 16 15 35 35 H 1.08999 * 109.47418 * 180.02562 * 17 16 15 36 36 H 1.08999 * 109.47351 * 300.00656 * 17 16 15 37 37 H 1.08997 * 109.47159 * 59.99467 * 18 16 15 38 38 H 1.08994 * 109.47436 * 179.97438 * 18 16 15 39 39 H 1.09007 * 109.46818 * 300.00092 * 18 16 15 40 40 H 1.09007 * 109.46942 * 59.99989 * 19 16 15 41 41 H 1.08999 * 109.46926 * 179.97438 * 19 16 15 42 42 H 1.08997 * 109.47249 * 300.00314 * 19 16 15 43 43 H 1.09002 * 113.61483 * 334.57769 * 20 7 6 44 44 H 1.08997 * 113.61199 * 105.46600 * 20 7 6 45 45 H 0.97004 * 125.68077 * 180.02562 * 21 3 2 46 46 H 1.08997 * 109.46809 * 60.00085 * 23 22 21 47 47 H 0.96700 * 113.99781 * 300.00238 * 24 23 22 48 48 H 1.48504 * 109.99873 * 58.67838 * 25 23 22 49 49 H 1.48499 * 109.99943 * 180.02562 * 25 23 22 50 50 H 1.08002 * 126.06333 * 179.97438 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3264 1.1088 0.0000 4 6 1.8899 2.5092 -0.0007 5 8 0.7027 2.7766 -0.0019 6 7 2.8038 3.4998 -0.0001 7 6 2.3679 4.8985 -0.0014 8 1 1.3747 5.0327 0.4271 9 6 3.4180 5.8715 0.5606 10 6 3.0081 6.8386 -0.5625 11 1 3.8492 7.3642 -1.0147 12 7 1.9080 7.7332 -0.1943 13 6 1.7668 8.9198 -0.8177 14 8 2.5522 9.2477 -1.6849 15 8 0.7560 9.7421 -0.4789 16 6 0.6657 11.0040 -1.1916 17 6 0.4920 10.7336 -2.6874 18 6 -0.5361 11.7971 -0.6742 19 6 1.9458 11.8107 -0.9644 20 6 2.5541 5.6005 -1.3569 21 7 3.6284 0.6624 0.0006 22 6 3.6218 -0.6929 0.0004 23 6 4.8434 -1.5754 -0.0048 24 8 5.6192 -1.3080 -1.1748 25 14 4.3182 -3.3629 -0.0038 26 6 2.3379 -1.1247 -0.0009 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5137 29 1 -0.3633 0.8900 0.5139 30 1 3.7501 3.2867 0.0012 31 1 3.1830 6.2380 1.5599 32 1 4.4416 5.5073 0.4732 33 1 1.2812 7.4716 0.4982 34 1 -0.4200 10.1588 -2.8492 35 1 0.4246 11.6808 -3.2224 36 1 1.3478 10.1684 -3.0563 37 1 -0.4127 11.9897 0.3915 38 1 -0.6036 12.7445 -1.2089 39 1 -1.4479 11.2221 -0.8363 40 1 2.8017 11.2455 -1.3333 41 1 1.8781 12.7578 -1.4998 42 1 2.0696 12.0034 0.1012 43 1 3.3412 5.1628 -1.9709 44 1 1.6227 5.7486 -1.9034 45 1 4.4192 1.2243 0.0011 46 1 5.4424 -1.3718 0.8827 47 1 5.1482 -1.4678 -2.0040 48 1 3.4744 -3.6450 -1.1928 49 1 5.5139 -4.2435 -0.0082 50 1 2.0136 -2.1549 -0.0018 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941010_13940406.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:23:11 Heat of formation + Delta-G solvation = -82.314880 kcal Electronic energy + Delta-G solvation = -31217.796825 eV Core-core repulsion = 26827.205890 eV Total energy + Delta-G solvation = -4390.590935 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.188 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.62166 -42.00902 -40.95674 -39.56923 -37.96656 -37.81301 -35.65016 -35.03169 -33.70949 -33.17996 -31.55432 -28.39989 -28.33456 -28.21948 -27.35285 -26.86135 -25.56688 -23.71678 -22.58666 -21.59120 -21.22849 -21.01023 -20.23125 -19.53018 -19.33132 -18.15761 -17.81202 -17.39309 -17.17913 -16.73636 -16.61388 -16.40692 -16.07200 -15.67350 -15.49569 -15.40408 -15.17081 -14.97256 -14.63994 -14.42767 -14.33601 -13.95168 -13.90658 -13.64213 -13.58552 -13.55154 -13.42048 -13.19201 -13.12673 -12.97496 -12.95044 -12.90215 -12.56920 -12.36418 -12.27445 -12.02353 -11.86577 -11.73807 -11.43565 -11.17745 -11.15866 -10.82435 -10.36319 -10.17003 -9.82459 -9.19915 -4.83818 0.29231 1.07363 1.22262 1.53742 1.66517 1.69678 1.89411 2.01878 2.22485 2.23499 3.04238 3.26079 3.34383 3.43184 3.56816 3.70586 3.74005 3.77353 3.80961 3.91045 3.93753 4.13914 4.23492 4.38511 4.50016 4.50518 4.58238 4.60580 4.62227 4.70434 4.72530 4.73366 4.78184 4.82168 4.82641 4.84515 4.88330 4.90501 4.91686 5.08783 5.15496 5.21335 5.23848 5.29270 5.35896 5.43788 5.54877 5.63100 5.85100 6.28769 6.31132 6.39289 6.47870 7.05785 7.26423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.087 4.087 3 C -0.070 4.070 4 C 0.588 3.412 5 O -0.562 6.562 6 N -0.707 5.707 7 C 0.123 3.877 8 H 0.103 0.897 9 C -0.129 4.129 10 C 0.138 3.862 11 H 0.107 0.893 12 N -0.686 5.686 13 C 0.647 3.353 14 O -0.590 6.590 15 O -0.370 6.370 16 C 0.127 3.873 17 C -0.180 4.180 18 C -0.138 4.138 19 C -0.179 4.179 20 C -0.163 4.163 21 N -0.512 5.512 22 C 0.037 3.963 23 C -0.061 4.061 24 O -0.548 6.548 25 Si 0.791 3.209 26 C -0.208 4.208 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.410 0.590 31 H 0.096 0.904 32 H 0.129 0.871 33 H 0.416 0.584 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.063 0.937 43 H 0.107 0.893 44 H 0.058 0.942 45 H 0.428 0.572 46 H 0.137 0.863 47 H 0.389 0.611 48 H -0.285 1.285 49 H -0.298 1.298 50 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.399 -1.232 3.892 4.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.183 4.183 4 C 0.377 3.623 5 O -0.441 6.441 6 N -0.358 5.358 7 C 0.018 3.982 8 H 0.121 0.879 9 C -0.168 4.168 10 C 0.033 3.967 11 H 0.125 0.875 12 N -0.346 5.346 13 C 0.401 3.599 14 O -0.481 6.481 15 O -0.284 6.284 16 C 0.091 3.909 17 C -0.238 4.238 18 C -0.195 4.195 19 C -0.236 4.236 20 C -0.203 4.203 21 N -0.109 5.109 22 C -0.082 4.082 23 C -0.170 4.170 24 O -0.356 6.356 25 Si 0.695 3.305 26 C -0.232 4.232 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.247 0.753 31 H 0.115 0.885 32 H 0.147 0.853 33 H 0.253 0.747 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.118 0.882 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.082 0.918 43 H 0.126 0.874 44 H 0.076 0.924 45 H 0.268 0.732 46 H 0.155 0.845 47 H 0.239 0.761 48 H -0.211 1.211 49 H -0.225 1.225 50 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.488 -1.215 3.479 4.446 hybrid contribution 0.571 0.631 -1.141 1.423 sum 3.059 -0.584 2.338 3.894 Atomic orbital electron populations 1.20340 0.89281 1.03071 1.02103 1.20169 0.96275 0.91377 1.01733 1.20140 0.84497 0.93127 1.20534 1.17245 0.85696 0.83774 0.75604 1.90823 1.17644 1.83762 1.51849 1.45715 1.09607 1.05518 1.74924 1.22636 0.99863 0.78847 0.96890 0.87859 1.23716 1.00792 0.93191 0.99082 1.21684 0.88812 0.88678 0.97547 0.87472 1.44400 1.32840 1.15562 1.41764 1.18294 0.79892 0.81438 0.80305 1.90905 1.46466 1.76037 1.34702 1.86318 1.48097 1.31021 1.62997 1.22376 0.97874 0.79093 0.91605 1.22477 1.02709 1.03912 0.94668 1.21896 0.95105 0.99801 1.02710 1.22470 0.97312 1.01092 1.02758 1.24027 1.02675 0.96012 0.97584 1.41786 1.06779 1.06686 1.55696 1.21201 0.96918 0.83397 1.06710 1.25045 0.91563 1.08830 0.91536 1.86578 1.42743 1.89604 1.16667 0.93325 0.78896 0.70447 0.87849 1.20825 0.90945 0.99520 1.11914 0.91858 0.89978 0.91933 0.75294 0.88527 0.85319 0.74723 0.92172 0.89352 0.91763 0.91078 0.88223 0.91344 0.91673 0.89424 0.91810 0.87431 0.92354 0.73178 0.84529 0.76116 1.21111 1.22545 0.81740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.39 9.83 71.24 0.70 0.31 16 2 C -0.09 -0.35 6.21 -19.56 -0.12 -0.47 16 3 C -0.07 -0.18 7.06 40.35 0.28 0.11 16 4 C 0.59 2.63 7.79 86.45 0.67 3.30 16 5 O -0.56 -6.89 14.42 -4.34 -0.06 -6.95 16 6 N -0.71 2.31 5.36 -443.98 -2.38 -0.07 16 7 C 0.12 -0.39 4.09 45.52 0.19 -0.20 16 8 H 0.10 0.06 7.50 -2.39 -0.02 0.04 16 9 C -0.13 1.06 7.58 31.12 0.24 1.29 16 10 C 0.14 -0.34 4.33 45.58 0.20 -0.14 16 11 H 0.11 -0.02 7.47 -2.39 -0.02 -0.04 16 12 N -0.69 -0.36 5.26 -567.35 -2.99 -3.35 16 13 C 0.65 4.46 8.06 129.79 1.05 5.51 16 14 O -0.59 -6.95 11.48 19.81 0.23 -6.72 16 15 O -0.37 -2.26 9.94 -55.45 -0.55 -2.81 16 16 C 0.13 0.44 1.13 -10.79 -0.01 0.42 16 17 C -0.18 -0.72 8.37 71.98 0.60 -0.12 16 18 C -0.14 0.20 8.85 71.98 0.64 0.84 16 19 C -0.18 -0.56 8.37 71.98 0.60 0.04 16 20 C -0.16 0.27 7.69 31.18 0.24 0.51 16 21 N -0.51 1.73 5.99 -171.93 -1.03 0.70 16 22 C 0.04 -0.11 6.47 41.35 0.27 0.16 16 23 C -0.06 0.33 3.08 71.24 0.22 0.55 16 24 O -0.55 1.47 12.88 -148.98 -1.92 -0.45 16 25 Si 0.79 -4.08 30.54 68.60 2.10 -1.99 16 26 C -0.21 0.09 9.27 22.01 0.20 0.30 16 27 H 0.06 0.30 8.14 -2.38 -0.02 0.28 16 28 H 0.08 0.03 8.14 -2.39 -0.02 0.01 16 29 H 0.06 0.52 6.49 -2.39 -0.02 0.50 16 30 H 0.41 -3.93 7.84 -92.71 -0.73 -4.66 16 31 H 0.10 -0.88 8.14 -2.39 -0.02 -0.90 16 32 H 0.13 -1.62 8.11 -2.39 -0.02 -1.64 16 33 H 0.42 -1.23 8.81 -92.71 -0.82 -2.05 16 34 H 0.06 0.23 8.14 -2.38 -0.02 0.21 16 35 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 36 H 0.06 0.59 5.88 -2.39 -0.01 0.57 16 37 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 38 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 39 H 0.07 -0.09 8.14 -2.38 -0.02 -0.11 16 40 H 0.06 0.53 5.88 -2.38 -0.01 0.52 16 41 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 42 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 43 H 0.11 -0.40 8.14 -2.39 -0.02 -0.42 16 44 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 45 H 0.43 -3.79 8.19 -92.71 -0.76 -4.55 16 46 H 0.14 -1.13 7.96 -2.39 -0.02 -1.15 16 47 H 0.39 -2.71 8.70 -74.06 -0.64 -3.35 16 48 H -0.28 0.03 7.11 99.48 0.71 0.74 16 49 H -0.30 -0.64 7.11 99.48 0.71 0.07 16 50 H 0.17 -0.71 6.17 -2.91 -0.02 -0.73 16 Total: 0.00 -23.72 404.95 -2.54 -26.27 By element: Atomic # 1 Polarization: -15.14 SS G_CDS: -1.90 Total: -17.04 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: 5.96 Total: 12.41 kcal Atomic # 7 Polarization: 3.68 SS G_CDS: -6.40 Total: -2.72 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -2.30 Total: -16.93 kcal Atomic # 14 Polarization: -4.08 SS G_CDS: 2.10 Total: -1.99 kcal Total: -23.72 -2.54 -26.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941010_13940406.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.046 kcal (2) G-P(sol) polarization free energy of solvation -23.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds