Wall clock time and date at job start Sun Mar 7 2021 00:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47261 * 2 1 4 4 C 1.53000 * 109.47357 * 239.99742 * 2 1 3 5 5 O 1.45198 * 109.47271 * 119.99722 * 2 1 3 6 6 C 1.34639 * 116.99818 * 60.00143 * 5 2 1 7 7 O 1.21515 * 120.00099 * 359.97438 * 6 5 2 8 8 N 1.34771 * 120.00282 * 180.02562 * 6 5 2 9 9 C 1.46503 * 120.00598 * 179.97438 * 8 6 5 10 10 H 1.09006 * 112.84679 * 23.79660 * 9 8 6 11 11 C 1.53775 * 113.61945 * 154.99965 * 9 8 6 12 12 C 1.53778 * 87.08325 * 89.11448 * 11 9 8 13 13 H 1.09001 * 113.61475 * 270.80305 * 12 11 9 14 14 N 1.46503 * 113.61215 * 139.98035 * 12 11 9 15 15 C 1.34783 * 119.99846 * 156.53217 * 14 12 11 16 16 O 1.21278 * 119.99828 * 359.97438 * 15 14 12 17 17 C 1.50699 * 119.99974 * 180.02562 * 15 14 12 18 18 C 1.50696 * 109.47061 * 180.02562 * 17 15 14 19 19 C 1.34847 * 125.89295 * 85.01761 * 18 17 15 20 20 C 1.40896 * 107.41771 * 179.74847 * 19 18 17 21 21 C 1.34849 * 107.41486 * 0.22942 * 20 19 18 22 22 C 1.50698 * 125.88991 * 180.02562 * 21 20 19 23 23 O 1.42902 * 109.47460 * 244.97464 * 22 21 20 24 24 Si 1.86305 * 109.47129 * 4.97923 * 22 21 20 25 25 N 1.36338 * 108.22198 * 359.97438 * 21 20 19 26 26 C 1.53783 * 87.17183 * 25.39339 * 12 11 9 27 27 H 1.08996 * 109.47694 * 300.00460 * 1 2 3 28 28 H 1.09001 * 109.47008 * 60.00054 * 1 2 3 29 29 H 1.08998 * 109.47265 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47155 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47065 * 299.99911 * 3 2 1 32 32 H 1.08997 * 109.46806 * 59.99903 * 3 2 1 33 33 H 1.08995 * 109.47406 * 299.99989 * 4 2 1 34 34 H 1.09001 * 109.46896 * 60.00134 * 4 2 1 35 35 H 1.08999 * 109.47533 * 180.02562 * 4 2 1 36 36 H 0.97006 * 120.00174 * 359.97438 * 8 6 5 37 37 H 1.09008 * 113.61140 * 334.56760 * 11 9 8 38 38 H 1.08997 * 113.68959 * 203.68137 * 11 9 8 39 39 H 0.96998 * 120.00244 * 336.53384 * 14 12 11 40 40 H 1.08996 * 109.46985 * 59.99253 * 17 15 14 41 41 H 1.09001 * 109.46402 * 299.99889 * 17 15 14 42 42 H 1.08002 * 126.29438 * 0.02562 * 19 18 17 43 43 H 1.07997 * 126.29283 * 180.25032 * 20 19 18 44 44 H 1.09005 * 109.47334 * 124.97526 * 22 21 20 45 45 H 0.96709 * 113.99639 * 59.99944 * 23 22 21 46 46 H 1.48495 * 109.99784 * 179.97438 * 24 22 21 47 47 H 1.48502 * 109.99655 * 301.31790 * 24 22 21 48 48 H 0.96999 * 125.64118 * 179.97438 * 25 21 20 49 49 H 1.08997 * 113.61887 * 89.15496 * 26 12 11 50 50 H 1.09003 * 113.61436 * 220.06385 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9508 -2.5094 0.5040 8 7 2.0672 -2.6654 2.4171 9 6 1.6731 -4.0665 2.5837 10 1 1.4207 -4.5503 1.6401 11 6 2.6459 -4.8810 3.4527 12 6 1.8051 -4.4449 4.6642 13 1 2.1353 -3.5066 5.1099 14 7 1.6077 -5.5067 5.6541 15 6 1.3279 -5.1910 6.9342 16 8 1.2400 -4.0279 7.2666 17 6 1.1254 -6.2831 7.9527 18 6 0.8269 -5.6683 9.2958 19 6 -0.3866 -5.2755 9.7333 20 6 -0.2202 -4.7645 11.0358 21 6 1.0895 -4.8599 11.3425 22 6 1.7266 -4.4317 12.6393 23 8 2.6260 -3.3488 12.3936 24 14 0.4030 -3.8819 13.8297 25 7 1.7377 -5.4116 10.2775 26 6 0.6255 -4.2831 3.6909 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 2.6268 -2.2365 3.0834 37 1 3.6612 -4.4844 3.4604 38 1 2.6119 -5.9534 3.2607 39 1 1.6783 -6.4369 5.3884 40 1 2.0298 -6.8874 8.0221 41 1 0.2898 -6.9133 7.6482 42 1 -1.3161 -5.3444 9.1876 43 1 -0.9985 -4.3693 11.6717 44 1 2.2757 -5.2698 13.0685 45 1 2.2049 -2.5669 12.0107 46 1 1.0184 -3.4577 15.1128 47 1 -0.3736 -2.7603 13.2429 48 1 2.6891 -5.5937 10.2273 49 1 0.0368 -5.1915 3.5633 50 1 0.0120 -3.4045 3.8907 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941010_14644196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:23:13 Heat of formation + Delta-G solvation = -80.853377 kcal Electronic energy + Delta-G solvation = -30882.078519 eV Core-core repulsion = 26491.550960 eV Total energy + Delta-G solvation = -4390.527559 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.188 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.34368 -42.01480 -41.03820 -39.66950 -37.96036 -37.82794 -35.56717 -34.90497 -33.56538 -32.70055 -31.92546 -29.44349 -28.40668 -28.34553 -26.81198 -26.17917 -24.93525 -23.60531 -22.01300 -21.36510 -21.21839 -21.05717 -20.60721 -19.37636 -19.02575 -18.09796 -17.84040 -17.45281 -17.22011 -16.82833 -16.55203 -16.37555 -16.30365 -15.68925 -15.46879 -15.35966 -15.20114 -14.80248 -14.61966 -14.44372 -14.27465 -14.09331 -13.98309 -13.85650 -13.64011 -13.45457 -13.40102 -13.15937 -13.06743 -12.95910 -12.91323 -12.77586 -12.56459 -12.36942 -12.19611 -11.97325 -11.85989 -11.68846 -11.44368 -11.17496 -10.97095 -10.82742 -10.31236 -10.02075 -9.79901 -8.97071 -4.88723 1.07800 1.09183 1.29275 1.60597 1.66729 1.66898 1.84887 1.93996 2.33154 2.52312 3.04662 3.31284 3.37256 3.48079 3.69335 3.69771 3.75022 3.81099 3.81463 3.90134 3.96634 4.06023 4.23642 4.40917 4.42157 4.50422 4.52854 4.57663 4.62189 4.64881 4.68541 4.72488 4.75855 4.78461 4.80708 4.83453 4.84245 4.94384 4.95507 5.09318 5.23169 5.24662 5.25545 5.28876 5.34183 5.49671 5.58531 5.98402 6.12802 6.28937 6.37512 6.54968 6.68490 7.25866 7.28142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.126 3.874 3 C -0.138 4.138 4 C -0.179 4.179 5 O -0.371 6.371 6 C 0.647 3.353 7 O -0.590 6.590 8 N -0.688 5.688 9 C 0.134 3.866 10 H 0.107 0.893 11 C -0.128 4.128 12 C 0.121 3.879 13 H 0.091 0.909 14 N -0.705 5.705 15 C 0.510 3.490 16 O -0.580 6.580 17 C -0.067 4.067 18 C 0.035 3.965 19 C -0.202 4.202 20 C -0.203 4.203 21 C -0.017 4.017 22 C -0.062 4.062 23 O -0.554 6.554 24 Si 0.798 3.202 25 N -0.536 5.536 26 C -0.162 4.162 27 H 0.058 0.942 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.414 0.586 37 H 0.091 0.909 38 H 0.133 0.867 39 H 0.421 0.579 40 H 0.132 0.868 41 H 0.145 0.855 42 H 0.139 0.861 43 H 0.147 0.853 44 H 0.128 0.872 45 H 0.385 0.615 46 H -0.296 1.296 47 H -0.292 1.292 48 H 0.419 0.581 49 H 0.113 0.887 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.682 -6.350 -1.421 6.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.090 3.910 3 C -0.195 4.195 4 C -0.236 4.236 5 O -0.286 6.286 6 C 0.400 3.600 7 O -0.480 6.480 8 N -0.347 5.347 9 C 0.029 3.971 10 H 0.125 0.875 11 C -0.167 4.167 12 C 0.016 3.984 13 H 0.109 0.891 14 N -0.358 5.358 15 C 0.297 3.703 16 O -0.459 6.459 17 C -0.108 4.108 18 C -0.079 4.079 19 C -0.226 4.226 20 C -0.228 4.228 21 C -0.131 4.131 22 C -0.170 4.170 23 O -0.362 6.362 24 Si 0.702 3.298 25 N -0.131 5.131 26 C -0.202 4.202 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.251 0.749 37 H 0.109 0.891 38 H 0.151 0.849 39 H 0.260 0.740 40 H 0.149 0.851 41 H 0.163 0.837 42 H 0.157 0.843 43 H 0.165 0.835 44 H 0.146 0.854 45 H 0.235 0.765 46 H -0.224 1.224 47 H -0.219 1.219 48 H 0.257 0.743 49 H 0.131 0.869 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.563 -5.519 -0.941 5.813 hybrid contribution 0.902 0.987 -0.617 1.472 sum 2.464 -4.532 -1.558 5.389 Atomic orbital electron populations 1.22475 0.94093 1.03730 1.03454 1.22378 0.94438 0.92597 0.81556 1.21899 1.02498 0.90936 1.04203 1.22467 1.01683 1.02285 0.97171 1.86317 1.71565 1.23301 1.47423 1.18296 0.78552 0.80782 0.82334 1.90903 1.41947 1.70856 1.44342 1.44442 1.54917 1.12264 1.23051 1.21761 0.96747 0.79111 0.99475 0.87481 1.23707 0.98730 1.02659 0.91572 1.22490 0.96518 0.92222 0.87196 0.89054 1.45820 1.71534 1.10794 1.07644 1.21107 0.75163 0.90274 0.83744 1.90757 1.51684 1.22823 1.80611 1.20277 1.07644 0.96048 0.86781 1.19948 0.89318 1.06884 0.91768 1.20840 0.97562 1.07341 0.96870 1.20908 0.95126 1.08606 0.98168 1.20881 0.92917 1.07131 0.92160 1.24985 1.02182 0.92542 0.97310 1.86538 1.37852 1.26709 1.85094 0.93421 0.77356 0.85169 0.73894 1.41884 1.10060 1.48531 1.12653 1.24025 0.97546 1.03190 0.95423 0.92257 0.89301 0.91689 0.91112 0.88166 0.91436 0.91619 0.89372 0.91845 0.74924 0.89065 0.84867 0.74033 0.85055 0.83738 0.84306 0.83499 0.85447 0.76549 1.22393 1.21888 0.74302 0.86852 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.76 8.37 71.98 0.60 -0.16 16 2 C 0.13 0.47 1.13 -10.79 -0.01 0.46 16 3 C -0.14 0.15 8.85 71.98 0.64 0.79 16 4 C -0.18 -0.59 8.37 71.98 0.60 0.01 16 5 O -0.37 -2.46 9.94 -55.48 -0.55 -3.01 16 6 C 0.65 4.70 8.06 129.79 1.05 5.75 16 7 O -0.59 -7.03 11.48 19.79 0.23 -6.80 16 8 N -0.69 -0.67 5.26 -567.32 -2.99 -3.66 16 9 C 0.13 -0.35 4.33 45.58 0.20 -0.15 16 10 H 0.11 -0.05 7.46 -2.38 -0.02 -0.07 16 11 C -0.13 1.13 7.58 31.12 0.24 1.36 16 12 C 0.12 -0.49 4.09 45.52 0.19 -0.30 16 13 H 0.09 0.11 7.50 -2.39 -0.02 0.10 16 14 N -0.71 4.68 5.36 -440.03 -2.36 2.32 16 15 C 0.51 -0.03 7.82 87.66 0.69 0.65 16 16 O -0.58 -6.62 15.65 -3.02 -0.05 -6.67 16 17 C -0.07 0.41 6.24 29.10 0.18 0.59 16 18 C 0.04 0.06 5.66 41.08 0.23 0.30 16 19 C -0.20 -1.00 10.76 22.14 0.24 -0.76 16 20 C -0.20 -0.97 9.37 22.14 0.21 -0.76 16 21 C -0.02 -0.06 6.50 41.08 0.27 0.21 16 22 C -0.06 -0.08 3.08 71.24 0.22 0.14 16 23 O -0.55 -2.74 12.88 -148.98 -1.92 -4.66 16 24 Si 0.80 -0.03 30.60 68.60 2.10 2.07 16 25 N -0.54 -0.98 6.07 -171.13 -1.04 -2.02 16 26 C -0.16 0.37 7.69 31.18 0.24 0.61 16 27 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 28 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.06 0.60 5.88 -2.39 -0.01 0.59 16 30 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.10 -0.46 8.14 -2.39 -0.02 -0.48 16 32 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.06 0.54 5.88 -2.39 -0.01 0.53 16 34 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.41 -0.88 8.81 -92.70 -0.82 -1.70 16 37 H 0.09 -0.83 8.14 -2.38 -0.02 -0.85 16 38 H 0.13 -1.84 8.11 -2.39 -0.02 -1.86 16 39 H 0.42 -5.95 8.71 -92.71 -0.81 -6.76 16 40 H 0.13 -1.61 8.14 -2.39 -0.02 -1.62 16 41 H 0.14 -1.63 8.14 -2.39 -0.02 -1.65 16 42 H 0.14 0.43 8.06 -2.91 -0.02 0.41 16 43 H 0.15 0.30 6.24 -2.91 -0.02 0.28 16 44 H 0.13 -0.23 7.96 -2.38 -0.02 -0.25 16 45 H 0.39 0.54 8.70 -74.05 -0.64 -0.11 16 46 H -0.30 -1.85 7.11 99.48 0.71 -1.14 16 47 H -0.29 -1.64 7.11 99.48 0.71 -0.93 16 48 H 0.42 -0.78 8.96 -92.71 -0.83 -1.61 16 49 H 0.11 -0.60 8.14 -2.39 -0.02 -0.62 16 50 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 Total: 0.00 -28.23 409.35 -2.87 -31.11 By element: Atomic # 1 Polarization: -15.36 SS G_CDS: -2.06 Total: -17.42 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 5.77 Total: 8.74 kcal Atomic # 7 Polarization: 3.03 SS G_CDS: -6.39 Total: -3.35 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -2.29 Total: -21.14 kcal Atomic # 14 Polarization: -0.03 SS G_CDS: 2.10 Total: 2.07 kcal Total: -28.23 -2.87 -31.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941010_14644196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.746 kcal (2) G-P(sol) polarization free energy of solvation -28.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds