Wall clock time and date at job start Sun Mar 7 2021 00:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46933 * 2 1 4 4 C 1.52999 * 109.47045 * 240.00032 * 2 1 3 5 5 O 1.45201 * 109.47293 * 119.99756 * 2 1 3 6 6 C 1.34636 * 116.99489 * 59.99821 * 5 2 1 7 7 O 1.21507 * 120.00443 * 0.02562 * 6 5 2 8 8 N 1.34780 * 119.99740 * 179.97438 * 6 5 2 9 9 C 1.46502 * 120.00086 * 179.97438 * 8 6 5 10 10 H 1.08998 * 112.84952 * 336.20480 * 9 8 6 11 11 C 1.54054 * 113.69219 * 107.46982 * 9 8 6 12 12 C 1.53780 * 86.98308 * 139.99071 * 11 9 8 13 13 H 1.09004 * 113.61579 * 219.98047 * 12 11 9 14 14 N 1.46497 * 113.61287 * 89.16364 * 12 11 9 15 15 C 1.34780 * 120.00451 * 105.86190 * 14 12 11 16 16 O 1.21282 * 119.99560 * 359.97438 * 15 14 12 17 17 C 1.50697 * 120.00311 * 179.97438 * 15 14 12 18 18 C 1.53546 * 109.82196 * 280.00179 * 17 15 14 19 19 C 1.53030 * 108.56134 * 179.51310 * 18 17 15 20 20 C 1.50206 * 110.31268 * 49.58629 * 19 18 17 21 21 C 1.50702 * 118.54562 * 159.95265 * 20 19 18 22 22 O 1.42904 * 109.47280 * 69.95868 * 21 20 19 23 23 Si 1.86301 * 109.47132 * 189.95508 * 21 20 19 24 24 C 1.31113 * 122.90708 * 339.90671 * 20 19 18 25 25 N 1.38926 * 121.84759 * 0.45398 * 24 20 19 26 26 C 1.53775 * 113.61643 * 205.00208 * 9 8 6 27 27 H 1.09000 * 109.47152 * 300.00119 * 1 2 3 28 28 H 1.09007 * 109.46919 * 60.00104 * 1 2 3 29 29 H 1.08991 * 109.47325 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47056 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47101 * 299.99392 * 3 2 1 32 32 H 1.09000 * 109.47299 * 59.99970 * 3 2 1 33 33 H 1.08996 * 109.47180 * 299.99712 * 4 2 1 34 34 H 1.08996 * 109.47424 * 60.00619 * 4 2 1 35 35 H 1.09005 * 109.46725 * 180.02562 * 4 2 1 36 36 H 0.97004 * 119.99836 * 0.02562 * 8 6 5 37 37 H 1.08998 * 113.61245 * 25.48589 * 11 9 8 38 38 H 1.08997 * 113.69230 * 254.50612 * 11 9 8 39 39 H 0.97005 * 120.00054 * 285.85979 * 14 12 11 40 40 H 1.08997 * 109.81235 * 40.86180 * 17 15 14 41 41 H 1.09006 * 109.61557 * 299.23430 * 18 17 15 42 42 H 1.09004 * 109.62390 * 59.78376 * 18 17 15 43 43 H 1.09009 * 109.33162 * 169.82733 * 19 18 17 44 44 H 1.09000 * 109.33392 * 289.30677 * 19 18 17 45 45 H 1.08999 * 109.47144 * 309.95636 * 21 20 19 46 46 H 0.96701 * 114.00134 * 59.99708 * 22 21 20 47 47 H 1.48503 * 109.99859 * 179.97438 * 23 21 20 48 48 H 1.48491 * 109.99912 * 301.32210 * 23 21 20 49 49 H 1.08004 * 119.07431 * 180.42759 * 24 20 19 50 50 H 0.96995 * 120.56038 * 166.64218 * 25 24 20 51 51 H 1.09002 * 113.61179 * 105.38712 * 26 9 8 52 52 H 1.08999 * 113.69386 * 334.49822 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3383 7 8 0.9516 -2.5096 0.5036 8 7 2.0680 -2.6656 2.4167 9 6 1.6739 -4.0668 2.5832 10 1 0.7591 -4.3160 2.0455 11 6 2.8221 -5.0655 2.3435 12 6 2.2715 -5.8607 3.5391 13 1 3.0474 -6.2676 4.1875 14 7 1.2615 -6.8548 3.1675 15 6 1.5755 -8.1655 3.1636 16 8 2.6943 -8.5219 3.4672 17 6 0.5364 -9.1881 2.7820 18 6 -0.3913 -9.4582 3.9754 19 6 -1.4404 -10.4892 3.5533 20 6 -0.7787 -11.6690 2.9002 21 6 -1.5365 -12.9695 2.8257 22 8 -2.6185 -12.8382 1.9015 23 14 -0.3918 -14.3233 2.2532 24 6 0.4285 -11.6172 2.3914 25 7 1.1911 -10.4566 2.4299 26 6 1.6755 -4.5373 4.0472 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2492 34 1 1.6768 -0.2074 -2.1392 35 1 3.1300 -0.7216 -1.2490 36 1 2.6277 -2.2367 3.0829 37 1 3.8116 -4.6433 2.5185 38 1 2.7493 -5.5971 1.3948 39 1 0.3668 -6.5696 2.9244 40 1 -0.0465 -8.8244 1.9357 41 1 0.1908 -9.8487 4.8102 42 1 -0.8856 -8.5329 4.2715 43 1 -1.9903 -10.8252 4.4325 44 1 -2.1352 -10.0299 2.8501 45 1 -1.9290 -13.2184 3.8116 46 1 -2.3424 -12.6168 1.0015 47 1 -1.1269 -15.6113 2.1761 48 1 0.1749 -13.9810 0.9240 49 1 0.8419 -12.5018 1.9297 50 1 2.1395 -10.4827 2.2281 51 1 0.6776 -4.6428 4.4730 52 1 2.3516 -3.9717 4.6884 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13941010_15413834.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:23:18 Heat of formation + Delta-G solvation = -98.761077 kcal Electronic energy + Delta-G solvation = -31899.986848 eV Core-core repulsion = 27481.371274 eV Total energy + Delta-G solvation = -4418.615574 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.203 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.01344 -41.51403 -40.41093 -39.22790 -37.90344 -37.37722 -35.55666 -34.88771 -33.67325 -33.24860 -32.59974 -28.35655 -28.31919 -27.79250 -27.02357 -26.02417 -25.36121 -23.81779 -23.14705 -22.15057 -21.20379 -20.69586 -19.47383 -19.25463 -18.98961 -18.23891 -17.78179 -17.31240 -17.11269 -16.83728 -16.71715 -16.39608 -16.08213 -15.80873 -15.61316 -15.41299 -15.22151 -15.20627 -14.85221 -14.49009 -14.41639 -14.30435 -13.93756 -13.87309 -13.72385 -13.46257 -13.29474 -13.15647 -13.03576 -12.92584 -12.88330 -12.85690 -12.51432 -12.30536 -12.27424 -12.07985 -11.99105 -11.82786 -11.61422 -11.33025 -11.28264 -11.01822 -10.90709 -10.37770 -10.26040 -10.15268 -8.49718 -4.88040 1.15697 1.29492 1.40753 1.43335 1.61896 1.72178 1.82241 2.04771 2.55977 3.05163 3.16756 3.26711 3.40479 3.55128 3.62735 3.71311 3.74178 3.76966 3.80437 3.81804 3.94254 3.94480 4.22968 4.29718 4.34988 4.42755 4.46700 4.53722 4.56845 4.58571 4.60199 4.64930 4.69254 4.73393 4.75351 4.77855 4.81826 4.87049 4.90022 4.96189 5.05410 5.15236 5.17833 5.25826 5.33146 5.34006 5.43554 5.52906 5.56222 6.13828 6.31100 6.36040 6.60063 6.79388 6.98463 7.37464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.142 4.142 4 C -0.184 4.184 5 O -0.365 6.365 6 C 0.650 3.350 7 O -0.566 6.566 8 N -0.702 5.702 9 C 0.140 3.860 10 H 0.119 0.881 11 C -0.164 4.164 12 C 0.124 3.876 13 H 0.113 0.887 14 N -0.711 5.711 15 C 0.517 3.483 16 O -0.526 6.526 17 C 0.136 3.864 18 C -0.127 4.127 19 C -0.052 4.052 20 C -0.276 4.276 21 C -0.050 4.050 22 O -0.537 6.537 23 Si 0.670 3.330 24 C 0.139 3.861 25 N -0.731 5.731 26 C -0.151 4.151 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.408 0.592 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.404 0.596 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.110 0.890 46 H 0.372 0.628 47 H -0.260 1.260 48 H -0.265 1.265 49 H 0.134 0.866 50 H 0.409 0.591 51 H 0.086 0.914 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.001 3.953 2.104 4.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.279 6.279 6 C 0.404 3.596 7 O -0.455 6.455 8 N -0.360 5.360 9 C 0.035 3.965 10 H 0.137 0.863 11 C -0.204 4.204 12 C 0.018 3.982 13 H 0.131 0.869 14 N -0.363 5.363 15 C 0.303 3.697 16 O -0.401 6.401 17 C 0.027 3.973 18 C -0.165 4.165 19 C -0.089 4.089 20 C -0.287 4.287 21 C -0.161 4.161 22 O -0.343 6.343 23 Si 0.573 3.427 24 C 0.018 3.982 25 N -0.364 5.364 26 C -0.190 4.190 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.243 0.757 37 H 0.117 0.883 38 H 0.098 0.902 39 H 0.240 0.760 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.128 0.872 46 H 0.219 0.781 47 H -0.186 1.186 48 H -0.190 1.190 49 H 0.151 0.849 50 H 0.246 0.754 51 H 0.105 0.895 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.200 2.863 1.790 3.584 hybrid contribution -0.401 1.000 -0.933 1.425 sum 0.799 3.864 0.857 4.037 Atomic orbital electron populations 1.22520 0.93828 1.05005 1.02741 1.22124 0.94444 0.91577 0.81843 1.21882 1.02352 0.92334 1.03356 1.22519 1.01620 1.03417 0.96558 1.86312 1.71448 1.23439 1.46743 1.18177 0.78587 0.80585 0.82248 1.90912 1.41060 1.70534 1.43036 1.44730 1.55380 1.12079 1.23824 1.22716 0.99141 0.77803 0.96795 0.86326 1.24055 0.99519 0.97059 0.99813 1.21639 0.91846 0.87476 0.97213 0.86878 1.45629 1.15162 1.05555 1.69909 1.20620 0.89052 0.83091 0.76960 1.90744 1.22224 1.80145 1.46983 1.20990 0.92541 0.84786 0.99022 1.21883 0.97400 1.00564 0.96686 1.19936 0.96285 0.92641 1.00014 1.20901 0.97788 0.98521 1.11458 1.24721 0.94490 1.00234 0.96682 1.86578 1.33280 1.92152 1.22290 0.95292 0.83878 0.78018 0.85538 1.20505 0.92335 0.89212 0.96140 1.44270 1.11315 1.03907 1.76938 1.23779 1.03380 0.95613 0.96241 0.92107 0.90918 0.89470 0.91384 0.89913 0.91381 0.89462 0.90917 0.92121 0.75699 0.88330 0.90199 0.76048 0.89175 0.90282 0.90300 0.90638 0.91533 0.87249 0.78134 1.18576 1.19031 0.84867 0.75355 0.89515 0.87628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.16 8.37 37.16 0.31 0.16 16 2 C 0.14 0.12 1.13 -90.62 -0.10 0.02 16 3 C -0.14 0.14 8.85 37.16 0.33 0.47 16 4 C -0.18 -0.19 8.37 37.16 0.31 0.12 16 5 O -0.36 -0.67 9.94 -40.31 -0.40 -1.07 16 6 C 0.65 1.29 8.06 54.06 0.44 1.72 16 7 O -0.57 -2.39 11.48 -19.28 -0.22 -2.62 16 8 N -0.70 0.87 5.36 -57.79 -0.31 0.56 16 9 C 0.14 -0.33 4.13 -66.98 -0.28 -0.61 16 10 H 0.12 -0.16 7.46 -51.93 -0.39 -0.55 16 11 C -0.16 0.33 7.70 -25.78 -0.20 0.13 16 12 C 0.12 -0.32 4.29 -67.12 -0.29 -0.61 16 13 H 0.11 -0.13 7.50 -51.93 -0.39 -0.52 16 14 N -0.71 1.91 5.26 -53.02 -0.28 1.63 16 15 C 0.52 -0.09 7.10 -10.99 -0.08 -0.17 16 16 O -0.53 -1.88 15.68 5.56 0.09 -1.79 16 17 C 0.14 -0.17 3.36 -68.51 -0.23 -0.40 16 18 C -0.13 0.21 5.47 -26.43 -0.14 0.07 16 19 C -0.05 0.04 5.85 -28.11 -0.16 -0.13 16 20 C -0.28 0.04 5.37 -101.33 -0.54 -0.50 16 21 C -0.05 -0.01 2.81 36.01 0.10 0.09 16 22 O -0.54 -0.97 12.88 -35.23 -0.45 -1.43 16 23 Si 0.67 -0.24 29.97 -169.99 -5.09 -5.33 16 24 C 0.14 -0.05 9.61 -16.08 -0.15 -0.21 16 25 N -0.73 0.16 5.47 -55.34 -0.30 -0.15 16 26 C -0.15 0.65 7.57 -25.92 -0.20 0.45 16 27 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 28 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 29 H 0.09 0.25 5.88 -51.93 -0.31 -0.06 16 30 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 31 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 32 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 33 H 0.09 0.27 5.88 -51.93 -0.31 -0.03 16 34 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 35 H 0.06 0.05 8.14 -51.93 -0.42 -0.37 16 36 H 0.41 -1.32 8.84 -40.82 -0.36 -1.68 16 37 H 0.10 -0.23 8.14 -51.93 -0.42 -0.65 16 38 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 39 H 0.40 -1.96 8.70 -40.82 -0.36 -2.32 16 40 H 0.09 -0.21 8.14 -51.93 -0.42 -0.64 16 41 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 42 H 0.08 -0.27 8.14 -51.93 -0.42 -0.69 16 43 H 0.08 -0.05 8.14 -51.92 -0.42 -0.47 16 44 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 45 H 0.11 -0.01 7.96 -51.93 -0.41 -0.42 16 46 H 0.37 -0.36 8.70 45.56 0.40 0.04 16 47 H -0.26 -0.85 7.11 56.52 0.40 -0.45 16 48 H -0.26 -0.36 6.82 56.52 0.39 0.03 16 49 H 0.13 -0.18 4.31 -52.48 -0.23 -0.41 16 50 H 0.41 0.00 8.08 -40.82 -0.33 -0.33 16 51 H 0.09 -0.41 8.14 -51.93 -0.42 -0.84 16 52 H 0.11 -0.56 8.12 -51.93 -0.42 -0.98 16 LS Contribution 411.59 15.07 6.20 6.20 Total: 0.00 -8.65 411.59 -10.32 -18.96 By element: Atomic # 1 Polarization: -6.93 SS G_CDS: -8.65 Total: -15.58 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -0.89 Total: 0.62 kcal Atomic # 7 Polarization: 2.93 SS G_CDS: -0.89 Total: 2.04 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.99 Total: -6.91 kcal Atomic # 14 Polarization: -0.24 SS G_CDS: -5.09 Total: -5.33 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -8.65 -10.32 -18.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941010_15413834.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.800 kcal (2) G-P(sol) polarization free energy of solvation -8.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds