Wall clock time and date at job start Sun Mar 7 2021 00:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46933 * 2 1 4 4 C 1.52999 * 109.47045 * 240.00032 * 2 1 3 5 5 O 1.45201 * 109.47293 * 119.99756 * 2 1 3 6 6 C 1.34636 * 116.99489 * 59.99821 * 5 2 1 7 7 O 1.21507 * 120.00443 * 0.02562 * 6 5 2 8 8 N 1.34780 * 119.99740 * 179.97438 * 6 5 2 9 9 C 1.46502 * 120.00086 * 179.97438 * 8 6 5 10 10 H 1.08998 * 112.84952 * 336.20480 * 9 8 6 11 11 C 1.54054 * 113.69219 * 107.46982 * 9 8 6 12 12 C 1.53780 * 86.98308 * 139.99071 * 11 9 8 13 13 H 1.09004 * 113.61579 * 219.98047 * 12 11 9 14 14 N 1.46497 * 113.61287 * 89.16364 * 12 11 9 15 15 C 1.34780 * 120.00451 * 105.86190 * 14 12 11 16 16 O 1.21282 * 119.99560 * 359.97438 * 15 14 12 17 17 C 1.50697 * 120.00311 * 179.97438 * 15 14 12 18 18 C 1.53546 * 109.82196 * 280.00179 * 17 15 14 19 19 C 1.53030 * 108.56134 * 179.51310 * 18 17 15 20 20 C 1.50206 * 110.31268 * 49.58629 * 19 18 17 21 21 C 1.50702 * 118.54562 * 159.95265 * 20 19 18 22 22 O 1.42904 * 109.47280 * 69.95868 * 21 20 19 23 23 Si 1.86301 * 109.47132 * 189.95508 * 21 20 19 24 24 C 1.31113 * 122.90708 * 339.90671 * 20 19 18 25 25 N 1.38926 * 121.84759 * 0.45398 * 24 20 19 26 26 C 1.53775 * 113.61643 * 205.00208 * 9 8 6 27 27 H 1.09000 * 109.47152 * 300.00119 * 1 2 3 28 28 H 1.09007 * 109.46919 * 60.00104 * 1 2 3 29 29 H 1.08991 * 109.47325 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47056 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47101 * 299.99392 * 3 2 1 32 32 H 1.09000 * 109.47299 * 59.99970 * 3 2 1 33 33 H 1.08996 * 109.47180 * 299.99712 * 4 2 1 34 34 H 1.08996 * 109.47424 * 60.00619 * 4 2 1 35 35 H 1.09005 * 109.46725 * 180.02562 * 4 2 1 36 36 H 0.97004 * 119.99836 * 0.02562 * 8 6 5 37 37 H 1.08998 * 113.61245 * 25.48589 * 11 9 8 38 38 H 1.08997 * 113.69230 * 254.50612 * 11 9 8 39 39 H 0.97005 * 120.00054 * 285.85979 * 14 12 11 40 40 H 1.08997 * 109.81235 * 40.86180 * 17 15 14 41 41 H 1.09006 * 109.61557 * 299.23430 * 18 17 15 42 42 H 1.09004 * 109.62390 * 59.78376 * 18 17 15 43 43 H 1.09009 * 109.33162 * 169.82733 * 19 18 17 44 44 H 1.09000 * 109.33392 * 289.30677 * 19 18 17 45 45 H 1.08999 * 109.47144 * 309.95636 * 21 20 19 46 46 H 0.96701 * 114.00134 * 59.99708 * 22 21 20 47 47 H 1.48503 * 109.99859 * 179.97438 * 23 21 20 48 48 H 1.48491 * 109.99912 * 301.32210 * 23 21 20 49 49 H 1.08004 * 119.07431 * 180.42759 * 24 20 19 50 50 H 0.96995 * 120.56038 * 166.64218 * 25 24 20 51 51 H 1.09002 * 113.61179 * 105.38712 * 26 9 8 52 52 H 1.08999 * 113.69386 * 334.49822 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3383 7 8 0.9516 -2.5096 0.5036 8 7 2.0680 -2.6656 2.4167 9 6 1.6739 -4.0668 2.5832 10 1 0.7591 -4.3160 2.0455 11 6 2.8221 -5.0655 2.3435 12 6 2.2715 -5.8607 3.5391 13 1 3.0474 -6.2676 4.1875 14 7 1.2615 -6.8548 3.1675 15 6 1.5755 -8.1655 3.1636 16 8 2.6943 -8.5219 3.4672 17 6 0.5364 -9.1881 2.7820 18 6 -0.3913 -9.4582 3.9754 19 6 -1.4404 -10.4892 3.5533 20 6 -0.7787 -11.6690 2.9002 21 6 -1.5365 -12.9695 2.8257 22 8 -2.6185 -12.8382 1.9015 23 14 -0.3918 -14.3233 2.2532 24 6 0.4285 -11.6172 2.3914 25 7 1.1911 -10.4566 2.4299 26 6 1.6755 -4.5373 4.0472 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2492 34 1 1.6768 -0.2074 -2.1392 35 1 3.1300 -0.7216 -1.2490 36 1 2.6277 -2.2367 3.0829 37 1 3.8116 -4.6433 2.5185 38 1 2.7493 -5.5971 1.3948 39 1 0.3668 -6.5696 2.9244 40 1 -0.0465 -8.8244 1.9357 41 1 0.1908 -9.8487 4.8102 42 1 -0.8856 -8.5329 4.2715 43 1 -1.9903 -10.8252 4.4325 44 1 -2.1352 -10.0299 2.8501 45 1 -1.9290 -13.2184 3.8116 46 1 -2.3424 -12.6168 1.0015 47 1 -1.1269 -15.6113 2.1761 48 1 0.1749 -13.9810 0.9240 49 1 0.8419 -12.5018 1.9297 50 1 2.1395 -10.4827 2.2281 51 1 0.6776 -4.6428 4.4730 52 1 2.3516 -3.9717 4.6884 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941010_15413834.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:23:16 Heat of formation + Delta-G solvation = -101.333738 kcal Electronic energy + Delta-G solvation = -31900.098407 eV Core-core repulsion = 27481.371274 eV Total energy + Delta-G solvation = -4418.727133 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.203 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.01083 -41.52265 -40.33081 -39.23244 -37.96832 -37.43111 -35.60789 -34.89281 -33.64186 -33.21203 -32.53161 -28.38888 -28.32156 -27.75660 -26.81335 -25.96970 -25.31577 -23.76445 -23.13574 -22.07596 -21.22563 -20.61073 -19.45391 -19.27114 -18.94637 -18.22650 -17.78461 -17.28992 -17.19829 -16.81836 -16.66089 -16.34394 -16.09095 -15.82892 -15.61574 -15.43884 -15.23638 -15.19019 -14.77247 -14.51254 -14.38623 -14.21908 -13.98504 -13.77826 -13.53372 -13.38074 -13.18103 -13.13970 -12.99799 -12.93083 -12.92162 -12.88419 -12.55995 -12.38923 -12.31922 -11.97336 -11.95070 -11.68600 -11.64881 -11.41100 -11.25100 -11.14135 -10.92401 -10.31478 -10.27502 -10.09027 -8.46401 -4.89459 1.16503 1.32191 1.40260 1.44654 1.56630 1.71592 1.83935 1.98482 2.62702 3.13286 3.33379 3.44788 3.52246 3.58482 3.72213 3.76607 3.78540 3.82237 3.88488 3.92563 3.96039 4.05191 4.31368 4.41915 4.47617 4.54042 4.59154 4.62853 4.64856 4.69704 4.72805 4.74506 4.75323 4.79493 4.82276 4.84056 4.85721 4.92995 4.95765 5.04606 5.10068 5.23522 5.24903 5.25817 5.30574 5.33778 5.51048 5.57839 5.58590 6.22824 6.37780 6.42445 6.64258 6.81905 7.07158 7.32251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.642 3.358 7 O -0.594 6.594 8 N -0.689 5.689 9 C 0.137 3.863 10 H 0.109 0.891 11 C -0.163 4.163 12 C 0.123 3.877 13 H 0.101 0.899 14 N -0.698 5.698 15 C 0.519 3.481 16 O -0.567 6.567 17 C 0.136 3.864 18 C -0.120 4.120 19 C -0.052 4.052 20 C -0.282 4.282 21 C -0.055 4.055 22 O -0.557 6.557 23 Si 0.744 3.256 24 C 0.137 3.863 25 N -0.737 5.737 26 C -0.130 4.130 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.419 0.581 37 H 0.102 0.898 38 H 0.061 0.939 39 H 0.417 0.583 40 H 0.105 0.895 41 H 0.065 0.935 42 H 0.100 0.900 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.112 0.888 46 H 0.382 0.618 47 H -0.311 1.311 48 H -0.285 1.285 49 H 0.141 0.859 50 H 0.407 0.593 51 H 0.100 0.900 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.849 5.424 2.766 6.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.284 6.284 6 C 0.396 3.604 7 O -0.485 6.485 8 N -0.348 5.348 9 C 0.033 3.967 10 H 0.127 0.873 11 C -0.203 4.203 12 C 0.017 3.983 13 H 0.119 0.881 14 N -0.350 5.350 15 C 0.305 3.695 16 O -0.446 6.446 17 C 0.027 3.973 18 C -0.158 4.158 19 C -0.090 4.090 20 C -0.292 4.292 21 C -0.166 4.166 22 O -0.364 6.364 23 Si 0.652 3.348 24 C 0.016 3.984 25 N -0.369 5.369 26 C -0.169 4.169 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.256 0.744 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.254 0.746 40 H 0.123 0.877 41 H 0.084 0.916 42 H 0.118 0.882 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.130 0.870 46 H 0.230 0.770 47 H -0.240 1.240 48 H -0.212 1.212 49 H 0.158 0.842 50 H 0.244 0.756 51 H 0.118 0.882 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.041 4.385 2.475 5.142 hybrid contribution -0.358 0.529 -1.185 1.346 sum 0.683 4.914 1.289 5.126 Atomic orbital electron populations 1.22467 0.93918 1.03753 1.03512 1.22335 0.94526 0.92528 0.81482 1.21894 1.02419 0.90964 1.04252 1.22471 1.01553 1.02257 0.97441 1.86316 1.71519 1.23429 1.47180 1.18456 0.78587 0.80696 0.82671 1.90900 1.42391 1.71020 1.44182 1.44751 1.54804 1.12218 1.23055 1.22768 0.98501 0.77087 0.98299 0.87280 1.24042 0.99990 0.97188 0.99127 1.21624 0.91888 0.87980 0.96859 0.88068 1.45555 1.15769 1.04869 1.68773 1.20803 0.88581 0.83838 0.76294 1.90727 1.23883 1.80863 1.49101 1.21094 0.92260 0.84200 0.99704 1.21844 0.96898 1.01234 0.95865 1.19951 0.96448 0.92626 0.99933 1.20919 0.97863 0.98611 1.11810 1.24849 0.94327 1.00727 0.96683 1.86545 1.34350 1.92290 1.23254 0.94444 0.82185 0.74371 0.83810 1.20602 0.92309 0.89461 0.95999 1.44373 1.11334 1.04340 1.76872 1.23711 1.04406 0.93810 0.94965 0.91839 0.89611 0.91653 0.91265 0.88410 0.91094 0.91770 0.89562 0.92095 0.74401 0.87916 0.92050 0.74562 0.87746 0.91635 0.88155 0.90721 0.91453 0.86992 0.76969 1.23967 1.21232 0.84221 0.75620 0.88153 0.85932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.34 8.37 71.98 0.60 0.26 16 2 C 0.13 0.24 1.13 -10.79 -0.01 0.23 16 3 C -0.14 0.40 8.85 71.98 0.64 1.03 16 4 C -0.18 -0.46 8.37 71.98 0.60 0.14 16 5 O -0.37 -1.45 9.94 -55.45 -0.55 -2.01 16 6 C 0.64 2.91 8.06 129.79 1.05 3.96 16 7 O -0.59 -5.79 11.48 19.82 0.23 -5.57 16 8 N -0.69 1.81 5.36 -567.17 -3.04 -1.23 16 9 C 0.14 -0.68 4.13 45.61 0.19 -0.49 16 10 H 0.11 -0.27 7.46 -2.39 -0.02 -0.29 16 11 C -0.16 0.60 7.70 31.21 0.24 0.84 16 12 C 0.12 -0.66 4.29 45.52 0.20 -0.46 16 13 H 0.10 -0.21 7.50 -2.38 -0.02 -0.22 16 14 N -0.70 3.93 5.26 -440.04 -2.32 1.62 16 15 C 0.52 -0.07 7.10 87.66 0.62 0.56 16 16 O -0.57 -4.58 15.68 -3.04 -0.05 -4.63 16 17 C 0.14 -0.37 3.36 44.33 0.15 -0.22 16 18 C -0.12 0.47 5.47 30.79 0.17 0.63 16 19 C -0.05 0.10 5.85 29.70 0.17 0.27 16 20 C -0.28 0.10 5.37 -16.75 -0.09 0.01 16 21 C -0.06 -0.04 2.81 71.24 0.20 0.16 16 22 O -0.56 -2.18 12.88 -148.98 -1.92 -4.10 16 23 Si 0.74 -0.04 29.97 68.60 2.06 2.02 16 24 C 0.14 -0.09 9.61 83.42 0.80 0.71 16 25 N -0.74 0.09 5.47 -329.00 -1.80 -1.71 16 26 C -0.13 1.29 7.57 31.12 0.24 1.53 16 27 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 28 H 0.09 -0.10 8.14 -2.38 -0.02 -0.12 16 29 H 0.06 0.45 5.88 -2.39 -0.01 0.43 16 30 H 0.07 -0.20 8.14 -2.38 -0.02 -0.22 16 31 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 32 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 33 H 0.06 0.49 5.88 -2.39 -0.01 0.48 16 34 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 35 H 0.06 0.13 8.14 -2.38 -0.02 0.11 16 36 H 0.42 -3.03 8.84 -92.71 -0.82 -3.85 16 37 H 0.10 -0.46 8.14 -2.39 -0.02 -0.48 16 38 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.42 -4.41 8.70 -92.70 -0.81 -5.21 16 40 H 0.11 -0.57 8.14 -2.39 -0.02 -0.59 16 41 H 0.06 -0.04 8.14 -2.38 -0.02 -0.06 16 42 H 0.10 -0.83 8.14 -2.39 -0.02 -0.85 16 43 H 0.07 -0.12 8.14 -2.38 -0.02 -0.14 16 44 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 45 H 0.11 0.00 7.96 -2.39 -0.02 -0.02 16 46 H 0.38 -0.62 8.70 -74.06 -0.64 -1.26 16 47 H -0.31 -2.62 7.11 99.48 0.71 -1.92 16 48 H -0.28 -0.91 6.82 99.48 0.68 -0.23 16 49 H 0.14 -0.37 4.31 -2.91 -0.01 -0.38 16 50 H 0.41 0.32 8.08 -92.71 -0.75 -0.42 16 51 H 0.10 -1.18 8.14 -2.39 -0.02 -1.20 16 52 H 0.12 -1.56 8.12 -2.39 -0.02 -1.58 16 Total: 0.00 -21.81 411.59 -3.67 -25.48 By element: Atomic # 1 Polarization: -17.00 SS G_CDS: -2.04 Total: -19.04 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 5.76 Total: 9.17 kcal Atomic # 7 Polarization: 5.84 SS G_CDS: -7.16 Total: -1.32 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -2.29 Total: -16.30 kcal Atomic # 14 Polarization: -0.04 SS G_CDS: 2.06 Total: 2.02 kcal Total: -21.81 -3.67 -25.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941010_15413834.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.857 kcal (2) G-P(sol) polarization free energy of solvation -21.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds