Wall clock time and date at job start Sun Mar 7 2021 00:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47137 * 2 1 4 4 C 1.52992 * 109.47021 * 239.99949 * 2 1 3 5 5 O 1.45202 * 109.46944 * 120.00044 * 2 1 3 6 6 C 1.34630 * 117.00121 * 59.99985 * 5 2 1 7 7 O 1.21508 * 119.99986 * 359.97438 * 6 5 2 8 8 N 1.34781 * 120.00040 * 179.97438 * 6 5 2 9 9 C 1.46500 * 119.99985 * 179.97438 * 8 6 5 10 10 H 1.09002 * 112.85221 * 334.67013 * 9 8 6 11 11 C 1.53785 * 113.68813 * 105.94035 * 9 8 6 12 12 C 1.53777 * 87.08241 * 89.12417 * 11 9 8 13 13 H 1.08998 * 113.69520 * 270.87557 * 12 11 9 14 14 N 1.46499 * 113.61486 * 139.97730 * 12 11 9 15 15 C 1.34774 * 119.99884 * 107.49951 * 14 12 11 16 16 O 1.21286 * 120.00054 * 0.02562 * 15 14 12 17 17 C 1.50705 * 120.00141 * 180.02562 * 15 14 12 18 18 C 1.53036 * 109.32952 * 180.02562 * 17 15 14 19 19 C 1.53538 * 108.56395 * 169.83042 * 18 17 15 20 20 N 1.47033 * 107.66048 * 299.05472 * 19 18 17 21 21 C 1.38930 * 118.88365 * 43.65853 * 20 19 18 22 22 C 1.31119 * 121.84498 * 346.68628 * 21 20 19 23 23 C 1.50701 * 118.54389 * 180.42750 * 22 21 20 24 24 O 1.42893 * 109.46945 * 249.98097 * 23 22 21 25 25 Si 1.86310 * 109.46840 * 9.98126 * 23 22 21 26 26 C 1.53781 * 113.61339 * 203.47543 * 9 8 6 27 27 H 1.09001 * 109.47216 * 300.00166 * 1 2 3 28 28 H 1.08995 * 109.47199 * 59.99637 * 1 2 3 29 29 H 1.08997 * 109.47119 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47133 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47527 * 299.99932 * 3 2 1 32 32 H 1.09001 * 109.47203 * 59.99826 * 3 2 1 33 33 H 1.09004 * 109.47509 * 299.99750 * 4 2 1 34 34 H 1.09000 * 109.47475 * 60.00364 * 4 2 1 35 35 H 1.09000 * 109.47556 * 180.02562 * 4 2 1 36 36 H 0.96998 * 119.99866 * 0.02562 * 8 6 5 37 37 H 1.08999 * 113.61060 * 203.67840 * 11 9 8 38 38 H 1.08997 * 113.61198 * 334.57634 * 11 9 8 39 39 H 0.97004 * 120.00097 * 287.50765 * 14 12 11 40 40 H 1.09003 * 109.32614 * 60.35067 * 17 15 14 41 41 H 1.09002 * 109.62141 * 289.55567 * 18 17 15 42 42 H 1.08999 * 109.62339 * 49.92357 * 18 17 15 43 43 H 1.09002 * 109.81747 * 58.58837 * 19 18 17 44 44 H 1.08999 * 109.82622 * 179.50778 * 19 18 17 45 45 H 0.96996 * 120.55493 * 223.68414 * 20 19 18 46 46 H 1.07994 * 119.07415 * 166.68848 * 21 20 19 47 47 H 1.08997 * 109.46749 * 129.97665 * 23 22 21 48 48 H 0.96700 * 114.00288 * 60.00085 * 24 23 22 49 49 H 1.48497 * 110.00116 * 58.67860 * 25 23 22 50 50 H 1.48499 * 109.99581 * 180.02562 * 25 23 22 51 51 H 1.09000 * 113.61578 * 25.34726 * 26 9 8 52 52 H 1.08997 * 113.61673 * 156.25695 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5041 8 7 2.0680 -2.6657 2.4167 9 6 1.6739 -4.0668 2.5832 10 1 0.7449 -4.3094 2.0672 11 6 2.8106 -5.0653 2.3076 12 6 3.1784 -4.9366 3.7952 13 1 3.8843 -4.1328 4.0039 14 7 3.5621 -6.2065 4.4168 15 6 4.8519 -6.4410 4.7297 16 8 5.6948 -5.6005 4.4970 17 6 5.2468 -7.7475 5.3686 18 6 6.7568 -7.7537 5.6175 19 6 7.1031 -8.9675 6.4916 20 7 6.3840 -8.8196 7.7655 21 6 5.0562 -8.4114 7.7431 22 6 4.5040 -7.9121 6.6637 23 6 3.0604 -7.4840 6.7254 24 8 2.2640 -8.3813 5.9491 25 14 2.4799 -7.5110 8.4955 26 6 1.7112 -4.5479 4.0434 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1299 -0.7217 -1.2490 36 1 2.6276 -2.2368 3.0829 37 1 2.4605 -6.0592 2.0287 38 1 3.5759 -4.6804 1.6338 39 1 2.8879 -6.8786 4.6031 40 1 4.9876 -8.5687 4.7004 41 1 7.2843 -7.8251 4.6663 42 1 7.0472 -6.8360 6.1291 43 1 6.7873 -9.8840 5.9932 44 1 8.1772 -8.9968 6.6747 45 1 6.8292 -9.0035 8.6074 46 1 4.4622 -8.5080 8.6398 47 1 2.9636 -6.4743 6.3266 48 1 2.3022 -9.3001 6.2479 49 1 3.3206 -6.6060 9.3196 50 1 1.0573 -7.0914 8.5698 51 1 1.5893 -3.7453 4.7708 52 1 1.0608 -5.4003 4.2391 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941010_15608500.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:23:19 Heat of formation + Delta-G solvation = -93.316281 kcal Electronic energy + Delta-G solvation = -33004.992612 eV Core-core repulsion = 28586.613142 eV Total energy + Delta-G solvation = -4418.379470 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.203 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.12221 -41.63265 -40.34200 -39.05303 -37.97857 -37.53346 -35.57857 -34.92554 -33.74472 -32.89627 -32.57264 -28.41389 -28.35163 -27.50919 -26.90042 -26.49603 -25.09048 -23.58414 -23.23245 -21.84875 -21.19181 -20.74436 -19.40869 -19.25397 -18.89473 -18.05191 -17.88504 -17.48653 -17.23113 -17.07570 -16.62804 -16.50232 -15.93855 -15.72004 -15.50732 -15.42068 -15.21616 -15.08331 -14.66232 -14.52211 -14.39180 -14.16295 -14.07267 -13.78888 -13.52600 -13.44367 -13.22225 -13.18927 -13.13848 -12.96880 -12.92155 -12.58826 -12.57753 -12.37994 -12.22437 -12.04757 -11.94388 -11.82517 -11.73816 -11.45446 -11.35087 -11.19091 -10.80515 -10.35631 -10.25161 -9.91952 -8.42830 -4.98092 1.04466 1.24907 1.39279 1.62920 1.65364 1.69195 2.03813 2.27982 2.68259 3.01601 3.25400 3.41193 3.49776 3.69063 3.71939 3.73746 3.76218 3.87828 3.89425 3.92404 3.94778 4.20766 4.33786 4.35967 4.39830 4.49345 4.57015 4.58528 4.59700 4.61417 4.67417 4.71761 4.74068 4.75191 4.80242 4.80889 4.82837 4.85832 4.87340 4.91272 5.08181 5.20663 5.22618 5.23840 5.26583 5.32383 5.46000 5.47835 5.55383 6.26648 6.32956 6.51585 6.95176 6.99446 7.23623 7.24872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.126 3.874 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.371 6.371 6 C 0.648 3.352 7 O -0.589 6.589 8 N -0.687 5.687 9 C 0.141 3.859 10 H 0.108 0.892 11 C -0.159 4.159 12 C 0.112 3.888 13 H 0.098 0.902 14 N -0.710 5.710 15 C 0.518 3.482 16 O -0.588 6.588 17 C -0.034 4.034 18 C -0.122 4.122 19 C 0.124 3.876 20 N -0.746 5.746 21 C 0.168 3.832 22 C -0.302 4.302 23 C -0.065 4.065 24 O -0.556 6.556 25 Si 0.760 3.240 26 C -0.135 4.135 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.415 0.585 37 H 0.108 0.892 38 H 0.059 0.941 39 H 0.423 0.577 40 H 0.109 0.891 41 H 0.074 0.926 42 H 0.051 0.949 43 H 0.076 0.924 44 H 0.096 0.904 45 H 0.414 0.586 46 H 0.154 0.846 47 H 0.103 0.897 48 H 0.399 0.601 49 H -0.301 1.301 50 H -0.301 1.301 51 H 0.093 0.907 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.133 -5.732 4.972 7.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.090 3.910 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.285 6.285 6 C 0.401 3.599 7 O -0.479 6.479 8 N -0.346 5.346 9 C 0.036 3.964 10 H 0.126 0.874 11 C -0.199 4.199 12 C 0.007 3.993 13 H 0.116 0.884 14 N -0.366 5.366 15 C 0.306 3.694 16 O -0.468 6.468 17 C -0.055 4.055 18 C -0.161 4.161 19 C 0.000 4.000 20 N -0.376 5.376 21 C 0.045 3.955 22 C -0.313 4.313 23 C -0.176 4.176 24 O -0.365 6.365 25 Si 0.668 3.332 26 C -0.174 4.174 27 H 0.081 0.919 28 H 0.107 0.893 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.119 0.881 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.251 0.749 37 H 0.126 0.874 38 H 0.078 0.922 39 H 0.266 0.734 40 H 0.127 0.873 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.094 0.906 44 H 0.115 0.885 45 H 0.250 0.750 46 H 0.170 0.830 47 H 0.120 0.880 48 H 0.251 0.749 49 H -0.229 1.229 50 H -0.229 1.229 51 H 0.111 0.889 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.028 -4.384 4.564 6.328 hybrid contribution 0.430 0.524 -0.060 0.680 sum 0.402 -3.860 4.504 5.946 Atomic orbital electron populations 1.22472 0.93764 1.03801 1.03625 1.22389 0.94672 0.92546 0.81372 1.21899 1.02377 0.90878 1.04355 1.22479 1.01525 1.02315 0.97458 1.86316 1.71556 1.23219 1.47448 1.18258 0.78535 0.80747 0.82313 1.90902 1.42094 1.71004 1.43917 1.44407 1.55005 1.11852 1.23358 1.21624 0.98663 0.77935 0.98169 0.87402 1.23951 0.98379 1.00795 0.96794 1.22606 0.96347 0.87461 0.92890 0.88394 1.46569 1.09358 1.19205 1.61465 1.21202 0.82212 0.89333 0.76649 1.90672 1.51355 1.48807 1.55952 1.19679 0.95799 0.94052 0.95925 1.21697 0.93997 0.99317 1.01039 1.21665 0.97581 0.96546 0.84248 1.44701 1.09828 1.74152 1.08880 1.20598 0.85822 0.92131 0.96993 1.20460 0.97618 1.17226 0.96026 1.25058 0.89124 0.95663 1.07778 1.86263 1.68420 1.23266 1.58580 0.94358 0.75731 0.88945 0.74134 1.23728 0.95287 1.03047 0.95342 0.91881 0.89288 0.91677 0.91368 0.88102 0.91131 0.91746 0.89223 0.92187 0.74881 0.87378 0.92245 0.73428 0.87296 0.90727 0.92975 0.90608 0.88519 0.74969 0.82959 0.88038 0.74941 1.22934 1.22948 0.88890 0.85910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.79 8.37 71.98 0.60 -0.19 16 2 C 0.13 0.60 1.13 -10.80 -0.01 0.59 16 3 C -0.14 0.05 8.85 71.98 0.64 0.68 16 4 C -0.18 -0.92 8.37 71.98 0.60 -0.32 16 5 O -0.37 -2.94 9.94 -55.39 -0.55 -3.49 16 6 C 0.65 5.86 8.06 129.79 1.05 6.91 16 7 O -0.59 -8.02 11.50 19.82 0.23 -7.79 16 8 N -0.69 -2.41 5.27 -567.60 -2.99 -5.40 16 9 C 0.14 0.19 4.30 45.52 0.20 0.38 16 10 H 0.11 0.34 7.50 -2.39 -0.02 0.32 16 11 C -0.16 -0.35 7.68 31.12 0.24 -0.11 16 12 C 0.11 0.21 4.13 45.52 0.19 0.40 16 13 H 0.10 0.54 7.46 -2.39 -0.02 0.53 16 14 N -0.71 -1.54 3.66 -440.02 -1.61 -3.15 16 15 C 0.52 3.54 6.85 87.66 0.60 4.14 16 16 O -0.59 -8.99 15.40 -3.05 -0.05 -9.04 16 17 C -0.03 -0.03 2.75 -12.43 -0.03 -0.06 16 18 C -0.12 -0.13 4.91 30.79 0.15 0.02 16 19 C 0.12 -0.69 7.16 86.46 0.62 -0.07 16 20 N -0.75 4.84 5.83 -345.89 -2.02 2.83 16 21 C 0.17 -0.92 9.61 83.41 0.80 -0.12 16 22 C -0.30 0.81 5.03 -16.76 -0.08 0.73 16 23 C -0.06 0.23 1.69 71.24 0.12 0.35 16 24 O -0.56 3.59 11.40 -148.98 -1.70 1.90 16 25 Si 0.76 -3.16 29.73 68.60 2.04 -1.12 16 26 C -0.14 0.36 7.57 31.12 0.24 0.59 16 27 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 28 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 29 H 0.06 0.62 5.88 -2.39 -0.01 0.61 16 30 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.10 -0.40 8.14 -2.39 -0.02 -0.42 16 32 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.06 0.67 5.88 -2.39 -0.01 0.65 16 34 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 35 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.41 0.09 8.82 -92.71 -0.82 -0.73 16 37 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 38 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.42 -0.35 5.24 -92.71 -0.49 -0.84 16 40 H 0.11 -0.20 8.14 -2.39 -0.02 -0.21 16 41 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 42 H 0.05 0.35 7.76 -2.39 -0.02 0.33 16 43 H 0.08 -0.55 8.14 -2.39 -0.02 -0.57 16 44 H 0.10 -0.78 8.14 -2.39 -0.02 -0.80 16 45 H 0.41 -4.27 8.96 -92.71 -0.83 -5.10 16 46 H 0.15 -1.56 4.49 -2.91 -0.01 -1.57 16 47 H 0.10 0.00 5.29 -2.39 -0.01 -0.01 16 48 H 0.40 -5.59 8.70 -74.06 -0.64 -6.24 16 49 H -0.30 -0.82 7.11 99.48 0.71 -0.12 16 50 H -0.30 -1.07 7.11 99.48 0.71 -0.36 16 51 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 52 H 0.12 -0.65 8.12 -2.39 -0.02 -0.67 16 Total: 0.00 -23.43 401.48 -2.50 -25.94 By element: Atomic # 1 Polarization: -12.83 SS G_CDS: -1.76 Total: -14.59 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 5.91 Total: 13.92 kcal Atomic # 7 Polarization: 0.90 SS G_CDS: -6.62 Total: -5.72 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -2.07 Total: -18.43 kcal Atomic # 14 Polarization: -3.16 SS G_CDS: 2.04 Total: -1.12 kcal Total: -23.43 -2.50 -25.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941010_15608500.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.381 kcal (2) G-P(sol) polarization free energy of solvation -23.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds