Wall clock time and date at job start Sun Mar 7 2021 00:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47156 * 2 1 4 4 C 1.52995 * 109.47108 * 239.99800 * 2 1 3 5 5 O 1.45200 * 109.46983 * 119.99907 * 2 1 3 6 6 C 1.34647 * 117.00106 * 59.99866 * 5 2 1 7 7 O 1.21505 * 119.99533 * 359.97438 * 6 5 2 8 8 N 1.34771 * 119.99949 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00170 * 180.02562 * 8 6 5 10 10 H 1.09003 * 112.84687 * 23.79949 * 9 8 6 11 11 C 1.53774 * 113.61661 * 155.00280 * 9 8 6 12 12 C 1.53781 * 87.08462 * 89.11785 * 11 9 8 13 13 H 1.09000 * 113.61086 * 270.80303 * 12 11 9 14 14 N 1.46498 * 113.61518 * 139.98113 * 12 11 9 15 15 C 1.34775 * 120.00149 * 154.99971 * 14 12 11 16 16 O 1.21285 * 119.99392 * 0.02562 * 15 14 12 17 17 C 1.50701 * 120.00229 * 179.97438 * 15 14 12 18 18 O 1.42904 * 109.46954 * 180.02562 * 17 15 14 19 19 C 1.35898 * 116.99683 * 180.02562 * 18 17 15 20 20 C 1.38716 * 120.05385 * 179.97438 * 19 18 17 21 21 N 1.48006 * 120.02646 * 359.97438 * 20 19 18 22 22 O 1.21799 * 119.99876 * 180.02562 * 21 20 19 23 23 O 1.21795 * 120.00126 * 0.02772 * 21 20 19 24 24 C 1.38166 * 119.94507 * 180.02562 * 20 19 18 25 25 C 1.38247 * 120.05350 * 359.97438 * 24 20 19 26 26 C 1.50699 * 119.94334 * 180.02562 * 25 24 20 27 27 O 1.42894 * 109.47188 * 64.99933 * 26 25 24 28 28 Si 1.86298 * 109.46950 * 185.00606 * 26 25 24 29 29 C 1.38295 * 120.11188 * 0.27779 * 25 24 20 30 30 C 1.38122 * 120.05087 * 359.44970 * 29 25 24 31 31 C 1.53782 * 113.61505 * 252.50354 * 9 8 6 32 32 H 1.08997 * 109.47327 * 300.00394 * 1 2 3 33 33 H 1.09000 * 109.47016 * 60.00135 * 1 2 3 34 34 H 1.08996 * 109.47431 * 180.02562 * 1 2 3 35 35 H 1.08993 * 109.47133 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.47047 * 299.99846 * 3 2 1 37 37 H 1.08997 * 109.47324 * 59.99604 * 3 2 1 38 38 H 1.09006 * 109.47201 * 299.99817 * 4 2 1 39 39 H 1.09000 * 109.47129 * 60.00134 * 4 2 1 40 40 H 1.08999 * 109.47470 * 180.02562 * 4 2 1 41 41 H 0.97004 * 120.00040 * 0.02562 * 8 6 5 42 42 H 1.08998 * 113.61460 * 334.56324 * 11 9 8 43 43 H 1.09008 * 113.61162 * 203.66914 * 11 9 8 44 44 H 0.96999 * 120.00154 * 334.99604 * 14 12 11 45 45 H 1.08990 * 109.46761 * 60.00114 * 17 15 14 46 46 H 1.08994 * 109.46865 * 299.99836 * 17 15 14 47 47 H 1.08000 * 119.97323 * 179.97438 * 24 20 19 48 48 H 1.09006 * 109.46662 * 305.00202 * 26 25 24 49 49 H 0.96709 * 113.99337 * 60.00344 * 27 26 25 50 50 H 1.48506 * 109.99834 * 180.02562 * 28 26 25 51 51 H 1.48502 * 110.00011 * 301.31529 * 28 26 25 52 52 H 1.07995 * 119.96850 * 179.70130 * 29 25 24 53 53 H 1.08009 * 120.02377 * 180.29655 * 30 29 25 54 54 H 1.09006 * 113.61853 * 156.33455 * 31 9 8 55 55 H 1.09000 * 113.61654 * 25.42454 * 31 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9724 1.3384 7 8 0.9508 -2.5094 0.5041 8 7 2.0680 -2.6657 2.4167 9 6 1.6748 -4.0671 2.5828 10 1 1.4223 -4.5505 1.6390 11 6 2.6484 -4.8814 3.4510 12 6 1.8077 -4.4465 4.6630 13 1 2.1375 -3.5082 5.1090 14 7 1.6112 -5.5088 5.6525 15 6 1.3622 -5.1937 6.9390 16 8 1.3004 -4.0307 7.2774 17 6 1.1596 -6.2865 7.9568 18 8 0.9121 -5.7041 9.2381 19 6 0.7073 -6.5584 10.2749 20 6 0.4620 -6.0614 11.5465 21 7 0.4236 -4.5997 11.7758 22 8 0.2086 -4.1639 12.8926 23 8 0.6070 -3.8327 10.8476 24 6 0.2545 -6.9321 12.5991 25 6 0.2907 -8.2975 12.3857 26 6 0.0635 -9.2449 13.5354 27 8 -1.2735 -9.0969 14.0175 28 14 0.3253 -10.9965 12.9577 29 6 0.5403 -8.7955 11.1199 30 6 0.7427 -7.9292 10.0633 31 6 0.6288 -4.2866 3.6885 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 3.1299 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9563 0.8899 38 1 1.6767 -1.7490 -1.2491 39 1 1.6767 -0.2075 -2.1392 40 1 3.1300 -0.7217 -1.2490 41 1 2.6276 -2.2368 3.0829 42 1 3.6634 -4.4843 3.4585 43 1 2.6137 -5.9536 3.2576 44 1 1.6603 -6.4389 5.3817 45 1 2.0540 -6.9074 8.0061 46 1 0.3069 -6.9000 7.6662 47 1 0.0639 -6.5456 13.5894 48 1 0.7661 -9.0179 14.3374 49 1 -1.9531 -9.2836 13.3553 50 1 0.1036 -11.9407 14.0823 51 1 -0.6050 -11.3080 11.8428 52 1 0.5729 -9.8625 10.9567 53 1 0.9328 -8.3186 9.0740 54 1 0.0420 -5.1962 3.5601 55 1 0.0134 -3.4093 3.8878 There are 79 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 79 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941010_4549638.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:24:05 Heat of formation + Delta-G solvation = -121.546542 kcal Electronic energy + Delta-G solvation = -40642.352679 eV Core-core repulsion = 35037.561675 eV Total energy + Delta-G solvation = -5604.791004 eV No. of doubly occupied orbitals = 79 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 424.186 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -43.29111 -42.04095 -41.75219 -41.05809 -40.01278 -39.21964 -37.91513 -37.62142 -37.45501 -35.57917 -34.94887 -33.54525 -33.27863 -32.25847 -29.91758 -28.39236 -28.33009 -27.81296 -26.78690 -26.68252 -25.76369 -24.12360 -23.53139 -22.81856 -21.84612 -21.16250 -20.70306 -20.53117 -19.77560 -19.35778 -19.17343 -18.63579 -18.46471 -18.20107 -17.75720 -17.56977 -17.36837 -17.21289 -16.97700 -16.54458 -16.35821 -16.13175 -15.82566 -15.67975 -15.58591 -15.42035 -15.22348 -14.87884 -14.75144 -14.41382 -14.09880 -14.00297 -13.79787 -13.67426 -13.48515 -13.42247 -13.24163 -13.16107 -13.09004 -12.94370 -12.89626 -12.70625 -12.55793 -12.39068 -12.35132 -12.34250 -12.27273 -12.21062 -11.97320 -11.78376 -11.67779 -11.42463 -11.15451 -10.99938 -10.84210 -10.72555 -10.30052 -10.07984 -9.80460 -4.90837 -1.31096 -0.23667 0.16027 0.35872 1.10646 1.22722 1.27587 1.45482 1.59687 1.68831 2.01818 2.05760 2.35630 3.07119 3.11902 3.25339 3.32279 3.36711 3.46413 3.49141 3.64573 3.71319 3.71911 3.76400 3.76611 3.82143 3.91737 3.94894 3.99801 4.05035 4.29160 4.39430 4.42412 4.54021 4.56027 4.59059 4.64340 4.64687 4.70105 4.73992 4.76043 4.80300 4.84812 4.84916 4.86457 4.94632 4.98865 5.08272 5.10320 5.19716 5.24323 5.25122 5.33218 5.48490 5.58567 5.77213 6.31328 6.41705 6.45649 6.48087 7.18294 7.28303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.127 3.873 3 C -0.139 4.139 4 C -0.179 4.179 5 O -0.372 6.372 6 C 0.647 3.353 7 O -0.590 6.590 8 N -0.688 5.688 9 C 0.133 3.867 10 H 0.109 0.891 11 C -0.125 4.125 12 C 0.121 3.879 13 H 0.093 0.907 14 N -0.695 5.695 15 C 0.507 3.493 16 O -0.567 6.567 17 C 0.023 3.977 18 O -0.293 6.293 19 C 0.195 3.805 20 C -0.106 4.106 21 N 0.035 4.965 22 O -0.205 6.205 23 O -0.173 6.173 24 C -0.003 4.003 25 C -0.147 4.147 26 C -0.092 4.092 27 O -0.551 6.551 28 Si 0.789 3.211 29 C -0.006 4.006 30 C -0.188 4.188 31 C -0.163 4.163 32 H 0.058 0.942 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.415 0.585 42 H 0.092 0.908 43 H 0.138 0.862 44 H 0.426 0.574 45 H 0.149 0.851 46 H 0.143 0.857 47 H 0.150 0.850 48 H 0.125 0.875 49 H 0.389 0.611 50 H -0.310 1.310 51 H -0.258 1.258 52 H 0.188 0.812 53 H 0.208 0.792 54 H 0.117 0.883 55 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.046 -13.526 -6.404 15.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 C -0.196 4.196 4 C -0.236 4.236 5 O -0.286 6.286 6 C 0.400 3.600 7 O -0.480 6.480 8 N -0.347 5.347 9 C 0.028 3.972 10 H 0.127 0.873 11 C -0.164 4.164 12 C 0.015 3.985 13 H 0.111 0.889 14 N -0.349 5.349 15 C 0.293 3.707 16 O -0.445 6.445 17 C -0.053 4.053 18 O -0.203 6.203 19 C 0.145 3.855 20 C -0.191 4.191 21 N 0.544 4.456 22 O -0.412 6.412 23 O -0.387 6.387 24 C -0.022 4.022 25 C -0.149 4.149 26 C -0.199 4.199 27 O -0.359 6.359 28 Si 0.692 3.308 29 C -0.023 4.023 30 C -0.206 4.206 31 C -0.203 4.203 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.251 0.749 42 H 0.111 0.889 43 H 0.156 0.844 44 H 0.265 0.735 45 H 0.166 0.834 46 H 0.161 0.839 47 H 0.167 0.833 48 H 0.143 0.857 49 H 0.239 0.761 50 H -0.238 1.238 51 H -0.183 1.183 52 H 0.205 0.795 53 H 0.224 0.776 54 H 0.135 0.865 55 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.632 -13.914 -6.293 15.958 hybrid contribution -1.268 1.461 0.638 2.037 sum 3.364 -12.452 -5.655 14.084 Atomic orbital electron populations 1.22480 0.94157 1.03734 1.03413 1.22359 0.94377 0.92574 0.81588 1.21900 1.02526 0.91007 1.04171 1.22468 1.01708 1.02298 0.97126 1.86322 1.71549 1.23371 1.47388 1.18304 0.78551 0.80762 0.82363 1.90897 1.41955 1.70855 1.44340 1.44458 1.54903 1.12299 1.23077 1.21737 0.96825 0.79099 0.99556 0.87316 1.23726 0.98725 1.02866 0.91051 1.22570 0.96809 0.92118 0.86979 0.88897 1.45562 1.71954 1.11253 1.06137 1.20582 0.76307 0.89726 0.84081 1.90857 1.50510 1.22701 1.80405 1.23162 1.07573 0.95126 0.79489 1.86475 1.83276 1.33893 1.16616 1.18971 0.90427 0.91116 0.84987 1.20879 1.23459 0.78557 0.96197 1.43909 0.97082 1.04623 0.99951 1.94504 1.53866 1.82110 1.10709 1.94676 1.53013 1.55726 1.35334 1.20857 0.90962 0.92747 0.97680 1.20364 1.05053 0.92134 0.97323 1.25518 0.86382 1.09482 0.98471 1.86641 1.15491 1.91353 1.42454 0.94130 0.89001 0.69662 0.77998 1.21759 0.88232 1.02448 0.89873 1.21815 1.06985 0.87652 1.04179 1.24027 0.97559 1.03368 0.95345 0.92325 0.89341 0.91640 0.91077 0.88209 0.91480 0.91549 0.89427 0.91808 0.74889 0.88938 0.84395 0.73488 0.83400 0.83947 0.83273 0.85679 0.76141 1.23825 1.18315 0.79523 0.77558 0.86461 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.76 8.37 71.98 0.60 -0.15 16 2 C 0.13 0.46 1.13 -10.80 -0.01 0.45 16 3 C -0.14 0.14 8.85 71.98 0.64 0.78 16 4 C -0.18 -0.53 8.37 71.98 0.60 0.07 16 5 O -0.37 -2.37 9.94 -55.56 -0.55 -2.92 16 6 C 0.65 4.32 8.06 129.79 1.05 5.37 16 7 O -0.59 -6.59 11.48 19.82 0.23 -6.36 16 8 N -0.69 -0.09 5.27 -567.62 -2.99 -3.08 16 9 C 0.13 -0.55 4.32 45.52 0.20 -0.36 16 10 H 0.11 -0.24 7.46 -2.39 -0.02 -0.26 16 11 C -0.13 1.37 7.58 31.12 0.24 1.61 16 12 C 0.12 -0.69 4.12 45.52 0.19 -0.51 16 13 H 0.09 0.03 7.46 -2.39 -0.02 0.01 16 14 N -0.69 6.52 5.35 -440.03 -2.36 4.16 16 15 C 0.51 -0.56 7.91 87.66 0.69 0.14 16 16 O -0.57 -7.54 16.10 15.99 0.26 -7.29 16 17 C 0.02 -0.22 5.22 71.24 0.37 0.16 16 18 O -0.29 -0.94 7.68 -63.38 -0.49 -1.42 16 19 C 0.19 -0.10 6.67 22.51 0.15 0.05 16 20 C -0.11 -0.67 6.87 36.48 0.25 -0.42 16 21 N 0.03 0.57 4.45 -46.24 -0.21 0.36 16 22 O -0.20 -3.80 18.45 18.89 0.35 -3.45 16 23 O -0.17 -3.69 17.24 25.62 0.44 -3.25 16 24 C 0.00 0.00 9.19 22.25 0.20 0.20 16 25 C -0.15 0.95 5.35 -19.85 -0.11 0.84 16 26 C -0.09 0.62 2.80 71.24 0.20 0.82 16 27 O -0.55 1.00 12.83 -148.98 -1.91 -0.91 16 28 Si 0.79 -8.42 29.87 68.60 2.05 -6.37 16 29 C -0.01 0.07 8.66 22.26 0.19 0.27 16 30 C -0.19 2.27 9.04 22.36 0.20 2.47 16 31 C -0.16 0.65 7.68 31.12 0.24 0.89 16 32 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 34 H 0.06 0.59 5.88 -2.39 -0.01 0.58 16 35 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 36 H 0.10 -0.45 8.14 -2.39 -0.02 -0.47 16 37 H 0.07 -0.04 8.14 -2.39 -0.02 -0.05 16 38 H 0.07 0.51 5.88 -2.38 -0.01 0.50 16 39 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 40 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 41 H 0.41 -1.15 8.81 -92.71 -0.82 -1.96 16 42 H 0.09 -1.02 8.14 -2.39 -0.02 -1.04 16 43 H 0.14 -2.33 8.12 -2.38 -0.02 -2.35 16 44 H 0.43 -7.98 8.73 -92.71 -0.81 -8.79 16 45 H 0.15 -2.75 7.66 -2.39 -0.02 -2.77 16 46 H 0.14 -2.53 7.66 -2.39 -0.02 -2.55 16 47 H 0.15 0.49 7.61 -2.91 -0.02 0.47 16 48 H 0.13 -0.89 7.96 -2.38 -0.02 -0.91 16 49 H 0.39 -3.25 8.70 -74.05 -0.64 -3.89 16 50 H -0.31 0.14 7.11 99.48 0.71 0.84 16 51 H -0.26 2.60 7.01 99.48 0.70 3.30 16 52 H 0.19 -3.73 4.84 -2.91 -0.01 -3.74 16 53 H 0.21 -4.64 6.30 -2.91 -0.02 -4.65 16 54 H 0.12 -0.92 8.14 -2.38 -0.02 -0.93 16 55 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 Total: 0.00 -45.72 457.47 -0.54 -46.25 By element: Atomic # 1 Polarization: -27.12 SS G_CDS: -1.25 Total: -28.37 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 5.89 Total: 12.66 kcal Atomic # 7 Polarization: 6.99 SS G_CDS: -5.55 Total: 1.44 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -1.68 Total: -25.61 kcal Atomic # 14 Polarization: -8.42 SS G_CDS: 2.05 Total: -6.37 kcal Total: -45.72 -0.54 -46.25 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941010_4549638.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.292 kcal (2) G-P(sol) polarization free energy of solvation -45.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds