Wall clock time and date at job start Sun Mar 7 2021 00:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36770 * 125.80618 * 2 1 4 4 C 1.47272 * 126.93801 * 359.97438 * 3 2 1 5 5 O 1.21628 * 119.99673 * 359.71032 * 4 3 2 6 6 N 1.34770 * 119.99835 * 179.70850 * 4 3 2 7 7 C 1.46500 * 120.00035 * 180.02562 * 6 4 3 8 8 H 1.09006 * 112.85002 * 23.80304 * 7 6 4 9 9 C 1.53780 * 113.61454 * 154.99899 * 7 6 4 10 10 C 1.53778 * 87.08089 * 89.20358 * 9 7 6 11 11 H 1.09004 * 113.61522 * 270.79868 * 10 9 7 12 12 N 1.46499 * 113.61783 * 139.98334 * 10 9 7 13 13 C 1.34777 * 120.00199 * 156.52956 * 12 10 9 14 14 O 1.21513 * 119.99898 * 359.97438 * 13 12 10 15 15 O 1.34638 * 119.99834 * 180.27541 * 13 12 10 16 16 C 1.45201 * 116.99819 * 179.72501 * 15 13 12 17 17 C 1.52997 * 109.47346 * 59.99666 * 16 15 13 18 18 C 1.53000 * 109.47187 * 179.97438 * 16 15 13 19 19 C 1.52997 * 109.46698 * 299.99554 * 16 15 13 20 20 C 1.53782 * 87.17671 * 25.38924 * 10 9 7 21 21 C 1.46680 * 106.12091 * 179.72593 * 3 2 1 22 22 C 1.34487 * 106.33261 * 0.23716 * 21 3 2 23 23 C 1.50703 * 125.57687 * 179.97438 * 22 21 3 24 24 O 1.42895 * 109.46950 * 65.00148 * 23 22 21 25 25 Si 1.86299 * 109.47180 * 185.00324 * 23 22 21 26 26 N 1.34658 * 125.80126 * 180.13494 * 2 1 3 27 27 H 1.08998 * 109.46899 * 89.99404 * 1 2 3 28 28 H 1.08997 * 109.47232 * 209.99935 * 1 2 3 29 29 H 1.09002 * 109.46888 * 330.00154 * 1 2 3 30 30 H 0.97000 * 119.99948 * 0.02562 * 6 4 3 31 31 H 1.08993 * 113.61537 * 334.65295 * 9 7 6 32 32 H 1.09007 * 113.61121 * 203.74572 * 9 7 6 33 33 H 0.97001 * 120.00074 * 336.52060 * 12 10 9 34 34 H 1.08997 * 109.47392 * 59.99802 * 17 16 15 35 35 H 1.08999 * 109.47056 * 180.02562 * 17 16 15 36 36 H 1.08999 * 109.47175 * 299.99773 * 17 16 15 37 37 H 1.08997 * 109.47042 * 59.99813 * 18 16 15 38 38 H 1.08999 * 109.47303 * 179.97438 * 18 16 15 39 39 H 1.09003 * 109.46990 * 300.00104 * 18 16 15 40 40 H 1.08999 * 109.47400 * 60.00485 * 19 16 15 41 41 H 1.09013 * 109.46945 * 180.02562 * 19 16 15 42 42 H 1.08997 * 109.47343 * 300.00072 * 19 16 15 43 43 H 1.08993 * 113.61558 * 89.15586 * 20 10 9 44 44 H 1.08995 * 113.61588 * 220.06513 * 20 10 9 45 45 H 1.08001 * 126.83878 * 180.22787 * 21 3 2 46 46 H 1.09000 * 109.46734 * 305.00581 * 23 22 21 47 47 H 0.96705 * 114.00038 * 59.99814 * 24 23 22 48 48 H 1.48496 * 109.99968 * 58.68308 * 25 23 22 49 49 H 1.48500 * 109.99400 * 179.97438 * 25 23 22 50 50 H 0.97001 * 124.85477 * 0.06881 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3072 1.1092 0.0000 4 6 1.8703 2.5156 -0.0005 5 8 0.6840 2.7839 -0.0064 6 7 2.7850 3.5053 0.0055 7 6 2.3505 4.9044 0.0055 8 1 1.3453 5.0354 0.4062 9 6 3.3844 5.8706 0.6076 10 6 3.9715 5.9996 -0.8078 11 1 4.7397 5.2592 -1.0311 12 7 4.3795 7.3640 -1.1518 13 6 5.3079 7.5691 -2.1071 14 8 5.8068 6.6224 -2.6827 15 8 5.6868 8.8228 -2.4193 16 6 6.6956 8.9682 -3.4535 17 6 6.1802 8.3575 -4.7582 18 6 6.9946 10.4531 -3.6692 19 6 7.9746 8.2472 -3.0232 20 6 2.5785 5.6211 -1.3379 21 6 3.6882 0.6151 0.0067 22 6 3.6096 -0.7274 0.0049 23 6 4.7819 -1.6744 0.0094 24 8 5.5043 -1.5321 1.2341 25 14 4.1663 -3.4256 -0.1487 26 7 2.2947 -1.0921 -0.0026 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 3.7311 3.2913 0.0098 31 1 4.0609 5.3979 1.3195 32 1 2.9491 6.7957 0.9857 33 1 3.9814 8.1197 -0.6922 34 1 5.2690 8.8710 -5.0647 35 1 6.9377 8.4663 -5.5344 36 1 5.9670 7.2996 -4.6049 37 1 7.3616 10.8885 -2.7398 38 1 7.7521 10.5623 -4.4452 39 1 6.0832 10.9664 -3.9759 40 1 7.7614 7.1893 -2.8699 41 1 8.7322 8.3567 -3.7994 42 1 8.3418 8.6823 -2.0937 43 1 1.9225 6.4777 -1.4926 44 1 2.6054 4.9472 -2.1942 45 1 4.5891 1.2108 0.0120 46 1 5.4390 -1.4431 -0.8289 47 1 4.9803 -1.7228 2.0243 48 1 3.3864 -3.5785 -1.4030 49 1 5.3131 -4.3691 -0.1460 50 1 1.9734 -2.0074 -0.0057 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13941010_9865296.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:25:13 Heat of formation + Delta-G solvation = -79.181973 kcal Electronic energy + Delta-G solvation = -31405.204865 eV Core-core repulsion = 27014.749783 eV Total energy + Delta-G solvation = -4390.455082 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.188 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.50433 -41.79724 -40.87134 -39.23659 -37.86216 -37.69788 -35.40054 -34.70240 -33.34817 -32.80868 -31.83893 -28.97879 -28.29928 -28.25781 -26.84872 -26.43776 -25.31107 -23.63320 -22.89993 -21.64043 -21.17551 -20.65265 -20.38427 -19.02760 -18.73750 -17.99079 -17.56875 -17.06143 -16.99574 -16.94155 -16.56973 -16.34253 -15.78996 -15.72276 -15.41429 -15.29931 -14.97060 -14.91362 -14.49440 -14.43237 -14.27177 -14.14173 -13.89831 -13.74060 -13.58501 -13.41676 -13.39279 -13.09919 -13.06841 -12.81470 -12.79437 -12.72052 -12.60532 -12.42571 -12.26699 -12.19941 -11.90828 -11.64273 -11.25786 -10.92882 -10.84653 -10.51900 -10.17340 -9.99828 -9.80809 -9.15626 -5.34471 0.76749 1.00775 1.20879 1.25352 1.38054 1.72568 1.92213 1.95949 2.37114 2.62977 3.17061 3.28674 3.33122 3.47692 3.60762 3.80929 3.81536 3.82732 3.86917 3.93602 4.00363 4.09987 4.18849 4.34375 4.46029 4.49644 4.57736 4.58814 4.62441 4.65786 4.68889 4.74371 4.77103 4.80715 4.81073 4.88915 4.96166 4.97077 5.00198 5.02823 5.11312 5.24698 5.31337 5.39556 5.49405 5.64373 5.64596 5.70924 5.85787 6.30924 6.41912 6.46480 6.67180 7.45493 7.47413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.126 3.874 3 C -0.242 4.242 4 C 0.598 3.402 5 O -0.546 6.546 6 N -0.712 5.712 7 C 0.128 3.872 8 H 0.113 0.887 9 C -0.152 4.152 10 C 0.139 3.861 11 H 0.117 0.883 12 N -0.701 5.701 13 C 0.650 3.350 14 O -0.567 6.567 15 O -0.366 6.366 16 C 0.137 3.863 17 C -0.184 4.184 18 C -0.142 4.142 19 C -0.184 4.184 20 C -0.165 4.165 21 C -0.127 4.127 22 C -0.029 4.029 23 C -0.033 4.033 24 O -0.534 6.534 25 Si 0.672 3.328 26 N -0.545 5.545 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.104 0.896 30 H 0.402 0.598 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.407 0.593 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.096 0.904 44 H 0.079 0.921 45 H 0.147 0.853 46 H 0.126 0.874 47 H 0.380 0.620 48 H -0.251 1.251 49 H -0.244 1.244 50 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.622 -1.076 3.017 3.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.007 3.993 3 C -0.252 4.252 4 C 0.388 3.612 5 O -0.424 6.424 6 N -0.363 5.363 7 C 0.022 3.978 8 H 0.131 0.869 9 C -0.191 4.191 10 C 0.035 3.965 11 H 0.135 0.865 12 N -0.360 5.360 13 C 0.403 3.597 14 O -0.455 6.455 15 O -0.280 6.280 16 C 0.100 3.900 17 C -0.241 4.241 18 C -0.199 4.199 19 C -0.241 4.241 20 C -0.206 4.206 21 C -0.152 4.152 22 C -0.137 4.137 23 C -0.145 4.145 24 O -0.338 6.338 25 Si 0.572 3.428 26 N -0.144 5.144 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.123 0.877 30 H 0.237 0.763 31 H 0.104 0.896 32 H 0.122 0.878 33 H 0.242 0.758 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.115 0.885 44 H 0.098 0.902 45 H 0.164 0.836 46 H 0.143 0.857 47 H 0.228 0.772 48 H -0.176 1.176 49 H -0.168 1.168 50 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -0.646 -2.035 1.778 2.778 hybrid contribution 0.587 0.371 -0.242 0.735 sum -0.059 -1.665 1.536 2.266 Atomic orbital electron populations 1.20659 0.86507 1.04642 1.03889 1.20405 0.93789 0.85248 0.99877 1.20057 0.93068 0.91906 1.20157 1.17294 0.85161 0.83970 0.74776 1.90755 1.16547 1.84316 1.50828 1.45437 1.09868 1.04790 1.76164 1.21600 0.99607 0.80159 0.96444 0.86891 1.23784 0.98447 1.00565 0.96311 1.22679 0.96178 0.82479 0.95122 0.86469 1.44758 1.42245 1.09530 1.39438 1.18182 0.79411 0.81997 0.80068 1.90913 1.57728 1.42504 1.54404 1.86308 1.57074 1.28350 1.56292 1.22106 0.85749 0.96853 0.85266 1.22521 1.01817 1.03874 0.95922 1.21878 1.02697 0.92375 1.02960 1.22522 0.96192 1.03342 1.02054 1.24043 0.96717 1.01128 0.98664 1.21801 0.95674 0.92633 1.05074 1.20528 0.84362 0.95718 1.13090 1.24426 0.92709 1.06659 0.90735 1.86553 1.39681 1.92786 1.14827 0.95497 0.84818 0.75863 0.86608 1.41711 1.05548 1.08436 1.58722 0.90088 0.91357 0.87731 0.76347 0.89614 0.87804 0.75765 0.92123 0.90972 0.89430 0.91400 0.89960 0.91393 0.89433 0.90967 0.92124 0.88517 0.90225 0.83572 0.85677 0.77214 1.17607 1.16751 0.74739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.05 9.88 36.01 0.36 0.40 16 2 C 0.13 0.08 7.17 -81.88 -0.59 -0.50 16 3 C -0.24 -0.45 6.29 -103.35 -0.65 -1.10 16 4 C 0.60 1.74 7.81 -12.59 -0.10 1.64 16 5 O -0.55 -3.09 14.42 5.25 0.08 -3.01 16 6 N -0.71 -0.17 5.26 -54.05 -0.28 -0.45 16 7 C 0.13 -0.07 4.33 -67.02 -0.29 -0.36 16 8 H 0.11 0.07 7.46 -51.93 -0.39 -0.32 16 9 C -0.15 0.39 7.58 -25.92 -0.20 0.20 16 10 C 0.14 -0.10 4.09 -67.12 -0.27 -0.38 16 11 H 0.12 0.05 7.50 -51.93 -0.39 -0.34 16 12 N -0.70 0.01 5.37 -57.93 -0.31 -0.30 16 13 C 0.65 1.98 8.06 54.06 0.44 2.42 16 14 O -0.57 -3.04 11.50 -19.28 -0.22 -3.26 16 15 O -0.37 -0.99 9.94 -40.32 -0.40 -1.39 16 16 C 0.14 0.23 1.13 -90.62 -0.10 0.12 16 17 C -0.18 -0.33 8.37 37.16 0.31 -0.02 16 18 C -0.14 0.06 8.85 37.16 0.33 0.39 16 19 C -0.18 -0.30 8.37 37.16 0.31 0.02 16 20 C -0.17 0.05 7.69 -25.82 -0.20 -0.15 16 21 C -0.13 -0.07 10.45 -37.50 -0.39 -0.46 16 22 C -0.03 0.02 6.09 -81.86 -0.50 -0.48 16 23 C -0.03 0.05 2.98 36.01 0.11 0.16 16 24 O -0.53 0.52 12.88 -35.23 -0.45 0.06 16 25 Si 0.67 -1.77 30.96 -169.99 -5.26 -7.03 16 26 N -0.54 0.73 5.41 -5.42 -0.03 0.71 16 27 H 0.08 -0.04 8.14 -51.93 -0.42 -0.47 16 28 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 29 H 0.10 0.15 6.47 -51.93 -0.34 -0.19 16 30 H 0.40 -0.57 7.83 -40.82 -0.32 -0.89 16 31 H 0.09 -0.25 8.14 -51.93 -0.42 -0.67 16 32 H 0.10 -0.40 8.11 -51.92 -0.42 -0.82 16 33 H 0.41 -0.87 8.82 -40.82 -0.36 -1.23 16 34 H 0.06 0.09 8.14 -51.93 -0.42 -0.33 16 35 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 36 H 0.09 0.35 5.88 -51.93 -0.31 0.04 16 37 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 38 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 39 H 0.07 -0.03 8.14 -51.93 -0.42 -0.46 16 40 H 0.09 0.32 5.88 -51.93 -0.31 0.02 16 41 H 0.07 0.02 8.14 -51.92 -0.42 -0.40 16 42 H 0.06 0.08 8.14 -51.93 -0.42 -0.34 16 43 H 0.10 -0.09 8.14 -51.93 -0.42 -0.51 16 44 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 45 H 0.15 -0.11 7.70 -52.49 -0.40 -0.51 16 46 H 0.13 -0.14 7.96 -51.93 -0.41 -0.55 16 47 H 0.38 -1.78 8.70 45.56 0.40 -1.38 16 48 H -0.25 0.07 7.11 56.52 0.40 0.47 16 49 H -0.24 -0.20 7.11 56.52 0.40 0.20 16 50 H 0.41 -1.65 6.72 -40.82 -0.27 -1.93 16 LS Contribution 405.82 15.07 6.12 6.12 Total: 0.00 -9.61 405.82 -10.00 -19.61 By element: Atomic # 1 Polarization: -5.14 SS G_CDS: -7.79 Total: -12.93 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -1.44 Total: 1.88 kcal Atomic # 7 Polarization: 0.58 SS G_CDS: -0.62 Total: -0.05 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -1.00 Total: -7.61 kcal Atomic # 14 Polarization: -1.77 SS G_CDS: -5.26 Total: -7.03 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -9.61 -10.00 -19.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941010_9865296.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.567 kcal (2) G-P(sol) polarization free energy of solvation -9.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds