Wall clock time and date at job start Sun Mar 7 2021 00:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47396 * 2 1 4 4 C 1.52999 * 109.46782 * 240.00063 * 2 1 3 5 5 O 1.45202 * 109.47322 * 120.00150 * 2 1 3 6 6 C 1.34637 * 116.99987 * 59.99776 * 5 2 1 7 7 O 1.21517 * 119.99884 * 359.97438 * 6 5 2 8 8 N 1.34773 * 120.00455 * 179.97438 * 6 5 2 9 9 C 1.46491 * 120.00459 * 179.97438 * 8 6 5 10 10 H 1.08998 * 112.85396 * 336.20268 * 9 8 6 11 11 C 1.53952 * 113.66785 * 107.44214 * 9 8 6 12 12 C 1.53777 * 87.02637 * 139.93302 * 11 9 8 13 13 H 1.09003 * 113.61002 * 89.22655 * 12 11 9 14 14 N 1.46494 * 113.62143 * 220.05346 * 12 11 9 15 15 C 1.34776 * 119.99799 * 254.13645 * 14 12 11 16 16 O 1.21695 * 120.00501 * 359.97438 * 15 14 12 17 17 C 1.46686 * 119.99990 * 179.97438 * 15 14 12 18 18 C 1.37867 * 126.23121 * 180.32762 * 17 15 14 19 19 C 1.39839 * 107.08492 * 180.11842 * 18 17 15 20 20 C 1.50699 * 126.07121 * 179.83966 * 19 18 17 21 21 O 1.42892 * 109.47249 * 299.71987 * 20 19 18 22 22 Si 1.86298 * 109.47032 * 179.71372 * 20 19 18 23 23 C 1.35458 * 107.85823 * 359.58023 * 19 18 17 24 24 N 1.35524 * 108.87651 * 0.26251 * 23 19 18 25 25 C 1.53781 * 113.61872 * 205.00393 * 9 8 6 26 26 H 1.09003 * 109.46722 * 299.99595 * 1 2 3 27 27 H 1.08999 * 109.47371 * 59.99876 * 1 2 3 28 28 H 1.09001 * 109.47025 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47512 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.46962 * 300.00374 * 3 2 1 31 31 H 1.09002 * 109.47167 * 60.00039 * 3 2 1 32 32 H 1.09001 * 109.47204 * 299.99723 * 4 2 1 33 33 H 1.08998 * 109.47077 * 60.00456 * 4 2 1 34 34 H 1.09000 * 109.47152 * 179.97438 * 4 2 1 35 35 H 0.97004 * 119.99348 * 0.02562 * 8 6 5 36 36 H 1.09008 * 113.61422 * 25.41494 * 11 9 8 37 37 H 1.09003 * 113.67355 * 254.46794 * 11 9 8 38 38 H 0.97004 * 120.00036 * 74.13236 * 14 12 11 39 39 H 1.08003 * 126.46208 * 359.96301 * 18 17 15 40 40 H 1.09004 * 109.46453 * 59.72055 * 20 19 18 41 41 H 0.96703 * 114.00176 * 299.99748 * 21 20 19 42 42 H 1.48506 * 109.99834 * 58.68765 * 22 20 19 43 43 H 1.48502 * 110.00011 * 180.02562 * 22 20 19 44 44 H 1.08002 * 125.55536 * 180.24322 * 23 19 18 45 45 H 0.96998 * 125.68306 * 180.02562 * 24 23 19 46 46 H 1.08996 * 113.61498 * 105.47053 * 25 9 8 47 47 H 1.09005 * 113.61086 * 334.56695 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9508 -2.5094 0.5040 8 7 2.0681 -2.6658 2.4165 9 6 1.6740 -4.0669 2.5830 10 1 0.7592 -4.3161 2.0453 11 6 2.8216 -5.0645 2.3426 12 6 2.2736 -5.8601 3.5390 13 1 1.5233 -6.6013 3.2636 14 7 3.3183 -6.4046 4.4099 15 6 3.5977 -7.7228 4.3840 16 8 2.9821 -8.4609 3.6376 17 6 4.6441 -8.2679 5.2556 18 6 5.0380 -9.5871 5.3290 19 6 6.0557 -9.6593 6.2853 20 6 6.7907 -10.9057 6.7064 21 8 5.8612 -11.8478 7.2452 22 14 8.0571 -10.4719 8.0022 23 6 6.2675 -8.4091 6.7618 24 7 5.4162 -7.5544 6.1442 25 6 1.6755 -4.5375 4.0471 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2492 33 1 1.6766 -0.2074 -2.1392 34 1 3.1299 -0.7209 -1.2496 35 1 2.6277 -2.2369 3.0827 36 1 3.8113 -4.6416 2.5160 37 1 2.7479 -5.5962 1.3939 38 1 3.8088 -5.8163 5.0051 39 1 4.6347 -10.4101 4.7577 40 1 7.2906 -11.3422 5.8417 41 1 5.3788 -11.5259 8.0190 42 1 7.3917 -9.8466 9.1733 43 1 8.7893 -11.6926 8.4254 44 1 6.9959 -8.1379 7.5117 45 1 5.3604 -6.5990 6.3017 46 1 0.6777 -4.6444 4.4724 47 1 2.3512 -3.9703 4.6873 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941094_10543058.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:25:19 Heat of formation + Delta-G solvation = -79.620244 kcal Electronic energy + Delta-G solvation = -28756.866186 eV Core-core repulsion = 24521.929718 eV Total energy + Delta-G solvation = -4234.936468 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.49111 -41.93231 -40.91879 -39.51445 -37.94625 -37.79775 -35.65294 -34.97693 -33.58179 -32.43868 -30.69140 -28.39028 -28.31745 -26.93624 -26.84451 -25.86338 -24.15362 -22.76869 -21.64921 -21.24723 -20.92088 -20.72105 -19.87447 -19.15135 -18.13596 -17.59527 -17.31469 -17.21053 -16.92715 -16.51001 -16.24004 -16.03826 -15.79312 -15.55977 -15.41716 -15.31697 -14.77105 -14.62026 -14.46351 -14.35850 -13.91761 -13.84375 -13.56317 -13.46100 -13.38075 -13.16554 -12.94632 -12.88463 -12.62137 -12.51696 -12.45320 -12.42850 -12.22975 -12.03962 -11.81439 -11.41781 -11.32589 -11.13930 -10.50816 -10.35446 -10.14674 -9.93529 -9.28432 -4.83892 0.35708 1.10714 1.38591 1.58066 1.69427 1.70466 1.93858 2.10502 2.16088 2.23953 3.12949 3.29072 3.43892 3.55312 3.72321 3.74481 3.78344 3.80226 3.84680 3.92610 3.99494 4.18991 4.36665 4.41568 4.55272 4.56308 4.59190 4.60699 4.70291 4.74577 4.75043 4.81687 4.82291 4.86119 4.89127 4.94144 4.96917 5.03423 5.10559 5.23298 5.25039 5.32179 5.44939 5.57143 5.59145 5.73667 6.34242 6.38464 6.53118 6.63573 7.05298 7.31922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.128 3.872 3 C -0.137 4.137 4 C -0.181 4.181 5 O -0.367 6.367 6 C 0.642 3.358 7 O -0.596 6.596 8 N -0.684 5.684 9 C 0.140 3.860 10 H 0.105 0.895 11 C -0.162 4.162 12 C 0.124 3.876 13 H 0.101 0.899 14 N -0.699 5.699 15 C 0.589 3.411 16 O -0.577 6.577 17 C -0.069 4.069 18 C -0.106 4.106 19 C -0.226 4.226 20 C -0.062 4.062 21 O -0.558 6.558 22 Si 0.791 3.209 23 C 0.062 3.938 24 N -0.513 5.513 25 C -0.127 4.127 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.420 0.580 36 H 0.105 0.895 37 H 0.059 0.941 38 H 0.415 0.585 39 H 0.121 0.879 40 H 0.107 0.893 41 H 0.384 0.616 42 H -0.268 1.268 43 H -0.315 1.315 44 H 0.216 0.784 45 H 0.438 0.562 46 H 0.096 0.904 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.318 9.964 6.007 12.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 C -0.194 4.194 4 C -0.238 4.238 5 O -0.282 6.282 6 C 0.396 3.604 7 O -0.487 6.487 8 N -0.344 5.344 9 C 0.036 3.964 10 H 0.123 0.877 11 C -0.202 4.202 12 C 0.018 3.982 13 H 0.119 0.881 14 N -0.350 5.350 15 C 0.378 3.622 16 O -0.456 6.456 17 C -0.182 4.182 18 C -0.133 4.133 19 C -0.233 4.233 20 C -0.170 4.170 21 O -0.366 6.366 22 Si 0.695 3.305 23 C -0.076 4.076 24 N -0.110 5.110 25 C -0.166 4.166 26 H 0.082 0.918 27 H 0.104 0.896 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.116 0.884 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.258 0.742 36 H 0.123 0.877 37 H 0.078 0.922 38 H 0.252 0.748 39 H 0.139 0.861 40 H 0.125 0.875 41 H 0.233 0.767 42 H -0.194 1.194 43 H -0.244 1.244 44 H 0.233 0.767 45 H 0.280 0.720 46 H 0.115 0.885 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.933 9.011 5.316 11.567 hybrid contribution -0.991 -0.220 0.414 1.096 sum 3.942 8.791 5.729 11.209 Atomic orbital electron populations 1.22477 0.94081 1.03659 1.03551 1.22340 0.94426 0.92609 0.81478 1.21886 1.02486 0.90779 1.04274 1.22476 1.01651 1.02194 0.97468 1.86307 1.71478 1.23222 1.47175 1.18455 0.78573 0.80751 0.82645 1.90922 1.42337 1.71089 1.44318 1.44590 1.54856 1.11834 1.23081 1.22264 0.98442 0.77375 0.98347 0.87719 1.24053 1.00141 0.97002 0.99002 1.22181 0.90450 0.94608 0.90912 0.88101 1.45560 1.38998 1.07230 1.43253 1.17300 0.81382 0.82501 0.81040 1.90862 1.52637 1.59907 1.42187 1.20087 1.02490 0.92812 1.02820 1.21222 0.98131 0.94508 0.99434 1.19891 1.03646 0.95893 1.03829 1.24781 0.97269 0.88350 1.06634 1.86567 1.57172 1.43089 1.49801 0.94326 0.78306 0.81856 0.76017 1.22371 0.96737 0.88479 1.00002 1.41827 1.27770 1.11030 1.30413 1.23705 1.04056 0.93674 0.95141 0.91775 0.89582 0.91870 0.91108 0.88441 0.91033 0.91938 0.89566 0.91903 0.74186 0.87664 0.92194 0.74770 0.86066 0.87467 0.76683 1.19420 1.24376 0.76747 0.71997 0.88543 0.85610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.47 8.37 71.98 0.60 0.13 16 2 C 0.13 0.26 1.13 -10.80 -0.01 0.25 16 3 C -0.14 0.43 8.85 71.98 0.64 1.07 16 4 C -0.18 -0.53 8.37 71.98 0.60 0.07 16 5 O -0.37 -1.39 9.94 -55.47 -0.55 -1.94 16 6 C 0.64 3.26 8.06 129.79 1.05 4.31 16 7 O -0.60 -6.84 11.48 19.79 0.23 -6.61 16 8 N -0.68 1.85 5.36 -567.35 -3.04 -1.19 16 9 C 0.14 -0.46 4.24 45.58 0.19 -0.27 16 10 H 0.10 0.15 7.46 -2.39 -0.02 0.14 16 11 C -0.16 0.43 7.69 31.18 0.24 0.67 16 12 C 0.12 -0.44 4.21 45.52 0.19 -0.24 16 13 H 0.10 0.20 7.50 -2.39 -0.02 0.18 16 14 N -0.70 3.46 5.36 -443.99 -2.38 1.08 16 15 C 0.59 2.55 7.79 86.45 0.67 3.23 16 16 O -0.58 -8.62 16.50 -4.33 -0.07 -8.69 16 17 C -0.07 -0.09 7.06 40.35 0.28 0.20 16 18 C -0.11 -0.60 10.59 22.57 0.24 -0.36 16 19 C -0.23 0.08 5.44 -20.12 -0.11 -0.03 16 20 C -0.06 -0.01 3.02 71.24 0.22 0.21 16 21 O -0.56 -2.77 12.88 -148.98 -1.92 -4.69 16 22 Si 0.79 -3.90 30.59 68.60 2.10 -1.80 16 23 C 0.06 -0.48 10.45 83.48 0.87 0.39 16 24 N -0.51 4.33 5.99 -183.62 -1.10 3.23 16 25 C -0.13 1.20 7.58 31.12 0.24 1.43 16 26 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 27 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 28 H 0.06 0.51 5.88 -2.39 -0.01 0.50 16 29 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 30 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 31 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 32 H 0.06 0.54 5.88 -2.39 -0.01 0.53 16 33 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 34 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 35 H 0.42 -3.65 8.84 -92.71 -0.82 -4.47 16 36 H 0.10 -0.58 8.14 -2.38 -0.02 -0.60 16 37 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 38 H 0.41 -5.52 7.84 -92.71 -0.73 -6.24 16 39 H 0.12 1.28 8.06 -2.91 -0.02 1.26 16 40 H 0.11 0.07 7.96 -2.38 -0.02 0.06 16 41 H 0.38 -0.55 8.70 -74.06 -0.64 -1.19 16 42 H -0.27 0.92 7.11 99.48 0.71 1.62 16 43 H -0.31 -1.49 7.11 99.48 0.71 -0.78 16 44 H 0.22 -3.40 6.19 -2.91 -0.02 -3.42 16 45 H 0.44 -7.40 8.19 -92.71 -0.76 -8.16 16 46 H 0.10 -0.91 8.14 -2.39 -0.02 -0.93 16 47 H 0.13 -1.94 8.09 -2.38 -0.02 -1.96 16 Total: 0.00 -31.26 387.16 -2.70 -33.96 By element: Atomic # 1 Polarization: -22.53 SS G_CDS: -1.87 Total: -24.40 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 5.91 Total: 11.05 kcal Atomic # 7 Polarization: 9.64 SS G_CDS: -6.52 Total: 3.12 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -2.31 Total: -21.94 kcal Atomic # 14 Polarization: -3.90 SS G_CDS: 2.10 Total: -1.80 kcal Total: -31.26 -2.70 -33.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941094_10543058.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.660 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds