Wall clock time and date at job start Sun Mar 7 2021 00:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35537 * 125.67732 * 2 1 4 4 C 1.35455 * 108.87501 * 180.30167 * 3 2 1 5 5 C 1.50697 * 126.07052 * 179.69377 * 4 3 2 6 6 O 1.42902 * 109.47405 * 245.04446 * 5 4 3 7 7 Si 1.86294 * 109.47234 * 5.05113 * 5 4 3 8 8 C 1.39845 * 107.85980 * 359.73886 * 4 3 2 9 9 C 1.37650 * 125.68299 * 179.84776 * 2 1 3 10 10 C 1.46681 * 126.22818 * 359.96358 * 9 2 1 11 11 O 1.21687 * 120.00244 * 4.49196 * 10 9 2 12 12 N 1.34782 * 119.99780 * 184.48724 * 10 9 2 13 13 C 1.46502 * 119.99786 * 174.47983 * 12 10 9 14 14 H 1.09000 * 112.90520 * 336.25221 * 13 12 10 15 15 C 1.53951 * 113.66360 * 107.55245 * 13 12 10 16 16 C 1.53783 * 87.11171 * 139.89046 * 15 13 12 17 17 H 1.08993 * 113.61605 * 89.17987 * 16 15 13 18 18 N 1.46503 * 113.69045 * 220.07842 * 16 15 13 19 19 C 1.34773 * 119.99851 * 252.52981 * 18 16 15 20 20 O 1.21512 * 120.00072 * 0.02562 * 19 18 16 21 21 O 1.34639 * 119.99774 * 180.02562 * 19 18 16 22 22 C 1.45198 * 116.99827 * 180.02562 * 21 19 18 23 23 C 1.53004 * 109.47286 * 59.99831 * 22 21 19 24 24 C 1.52995 * 109.47017 * 180.02562 * 22 21 19 25 25 C 1.52998 * 109.47094 * 300.00199 * 22 21 19 26 26 C 1.53782 * 87.07947 * 334.63558 * 16 15 13 27 27 H 1.09001 * 109.46860 * 272.13308 * 1 2 3 28 28 H 1.08996 * 109.47330 * 32.13055 * 1 2 3 29 29 H 1.08998 * 109.47090 * 152.13514 * 1 2 3 30 30 H 1.08000 * 125.56565 * 0.08345 * 3 2 1 31 31 H 1.09004 * 109.46668 * 125.04925 * 5 4 3 32 32 H 0.96700 * 113.99631 * 179.97438 * 6 5 4 33 33 H 1.48493 * 110.00338 * 178.67879 * 7 5 4 34 34 H 1.48506 * 109.99879 * 299.99507 * 7 5 4 35 35 H 1.08001 * 126.45572 * 179.97438 * 8 4 3 36 36 H 0.96996 * 119.99893 * 354.47711 * 12 10 9 37 37 H 1.08998 * 113.54296 * 25.33815 * 15 13 12 38 38 H 1.08998 * 113.66549 * 254.45434 * 15 13 12 39 39 H 0.96994 * 119.99761 * 72.53669 * 18 16 15 40 40 H 1.09002 * 109.46519 * 60.00189 * 23 22 21 41 41 H 1.09000 * 109.46871 * 179.97438 * 23 22 21 42 42 H 1.08997 * 109.46868 * 300.00203 * 23 22 21 43 43 H 1.08997 * 109.47503 * 60.00030 * 24 22 21 44 44 H 1.09005 * 109.47070 * 179.97438 * 24 22 21 45 45 H 1.09000 * 109.47005 * 299.99657 * 24 22 21 46 46 H 1.08997 * 109.47398 * 59.99590 * 25 22 21 47 47 H 1.09000 * 109.47565 * 180.02562 * 25 22 21 48 48 H 1.09011 * 109.47149 * 299.99829 * 25 22 21 49 49 H 1.09000 * 113.61701 * 139.97644 * 26 16 15 50 50 H 1.09003 * 113.61724 * 270.80244 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7094 -0.0067 5 6 4.7536 1.6190 -0.0156 6 8 5.4694 1.4509 -1.2409 7 14 4.1936 3.3891 0.1387 8 6 3.5780 -0.6888 -0.0051 9 6 2.2679 -1.1181 0.0030 10 6 1.8124 -2.5124 0.0074 11 8 0.6248 -2.7648 -0.0737 12 7 2.7094 -3.5140 0.1013 13 6 2.2499 -4.8993 0.2277 14 1 1.2434 -4.9766 0.6387 15 6 2.4627 -5.7394 -1.0448 16 6 2.8737 -6.8962 -0.1186 17 1 2.0381 -7.5204 0.1977 18 7 4.0089 -7.6757 -0.6187 19 6 3.8124 -8.9185 -1.1014 20 8 2.6936 -9.3924 -1.1224 21 8 4.8557 -9.6351 -1.5605 22 6 4.5698 -10.9658 -2.0663 23 6 3.5915 -10.8667 -3.2385 24 6 5.8687 -11.6215 -2.5393 25 6 3.9480 -11.8117 -0.9533 26 6 3.2681 -5.8259 0.9129 27 1 -0.3633 0.0383 1.0270 28 1 -0.3634 0.8702 -0.5465 29 1 -0.3633 -0.9085 -0.4803 30 1 1.9081 2.1236 0.0013 31 1 5.4044 1.3694 0.8225 32 1 6.2568 2.0072 -1.3160 33 1 5.3707 4.2940 0.1632 34 1 3.3056 3.7418 -0.9982 35 1 4.4583 -1.3144 -0.0096 36 1 3.6592 -3.3175 0.0852 37 1 3.2737 -5.3760 -1.6759 38 1 1.5452 -5.9306 -1.6013 39 1 4.9018 -7.2973 -0.6022 40 1 4.0345 -10.2641 -4.0314 41 1 3.3773 -11.8657 -3.6184 42 1 2.6663 -10.3997 -2.9010 43 1 6.5653 -11.6922 -1.7040 44 1 5.6541 -12.6207 -2.9186 45 1 6.3120 -11.0191 -3.3321 46 1 3.0228 -11.3447 -0.6158 47 1 3.7338 -12.8108 -1.3327 48 1 4.6450 -11.8824 -0.1181 49 1 3.0008 -6.0869 1.9369 50 1 4.2998 -5.4871 0.8180 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941094_10803934.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:25:21 Heat of formation + Delta-G solvation = -69.337492 kcal Electronic energy + Delta-G solvation = -31051.360674 eV Core-core repulsion = 26661.332481 eV Total energy + Delta-G solvation = -4390.028193 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.188 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.55192 -41.92793 -40.88879 -39.46211 -37.94787 -37.74421 -35.65490 -35.02931 -34.06109 -33.38079 -30.84286 -28.38748 -28.38096 -28.31608 -26.80999 -26.28591 -25.50715 -23.97699 -22.67794 -21.60983 -21.10029 -20.95633 -20.23305 -19.19180 -18.60802 -18.36787 -18.07271 -17.30537 -17.20564 -17.00395 -16.68499 -16.22271 -16.01285 -15.66480 -15.51813 -15.41016 -15.29436 -14.99183 -14.81758 -14.46601 -14.38937 -14.01984 -13.92486 -13.56275 -13.53802 -13.38161 -13.23585 -13.16260 -13.11519 -12.94158 -12.88339 -12.60371 -12.50846 -12.48648 -12.37503 -12.20600 -12.01463 -11.92195 -11.41349 -11.13243 -11.12932 -10.34122 -10.30263 -10.10254 -9.67905 -9.25981 -4.86206 0.39211 1.11503 1.37212 1.54199 1.59370 1.68657 1.71134 2.03129 2.26218 2.32065 3.14134 3.32913 3.46653 3.57274 3.71091 3.72709 3.76996 3.80055 3.86055 3.92795 3.95065 4.00295 4.16142 4.37184 4.41111 4.42419 4.55520 4.58421 4.59448 4.64121 4.65126 4.70379 4.73831 4.74728 4.79027 4.82686 4.84617 4.86114 4.93962 4.98673 5.11460 5.20470 5.25198 5.26079 5.34748 5.48303 5.57587 5.67611 5.90396 6.15044 6.37393 6.45822 6.72406 7.10172 7.32306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.413 5.413 3 C 0.031 3.969 4 C -0.181 4.181 5 C -0.046 4.046 6 O -0.561 6.561 7 Si 0.760 3.240 8 C -0.110 4.110 9 C -0.079 4.079 10 C 0.589 3.411 11 O -0.582 6.582 12 N -0.692 5.692 13 C 0.129 3.871 14 H 0.106 0.894 15 C -0.164 4.164 16 C 0.142 3.858 17 H 0.108 0.892 18 N -0.685 5.685 19 C 0.643 3.357 20 O -0.595 6.595 21 O -0.368 6.368 22 C 0.127 3.873 23 C -0.181 4.181 24 C -0.138 4.138 25 C -0.180 4.180 26 C -0.129 4.129 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.086 0.914 30 H 0.194 0.806 31 H 0.092 0.908 32 H 0.392 0.608 33 H -0.290 1.290 34 H -0.298 1.298 35 H 0.163 0.837 36 H 0.418 0.582 37 H 0.099 0.901 38 H 0.061 0.939 39 H 0.419 0.581 40 H 0.061 0.939 41 H 0.086 0.914 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.098 0.902 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.086 0.914 48 H 0.063 0.937 49 H 0.099 0.901 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.303 2.410 3.925 7.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.085 5.085 3 C -0.106 4.106 4 C -0.187 4.187 5 C -0.155 4.155 6 O -0.370 6.370 7 Si 0.666 3.334 8 C -0.136 4.136 9 C -0.192 4.192 10 C 0.378 3.622 11 O -0.464 6.464 12 N -0.343 5.343 13 C 0.024 3.976 14 H 0.124 0.876 15 C -0.204 4.204 16 C 0.037 3.963 17 H 0.126 0.874 18 N -0.345 5.345 19 C 0.396 3.604 20 O -0.486 6.486 21 O -0.283 6.283 22 C 0.091 3.909 23 C -0.238 4.238 24 C -0.195 4.195 25 C -0.237 4.237 26 C -0.167 4.167 27 H 0.108 0.892 28 H 0.125 0.875 29 H 0.105 0.895 30 H 0.211 0.789 31 H 0.110 0.890 32 H 0.242 0.758 33 H -0.217 1.217 34 H -0.226 1.226 35 H 0.180 0.820 36 H 0.256 0.744 37 H 0.118 0.882 38 H 0.080 0.920 39 H 0.257 0.743 40 H 0.080 0.920 41 H 0.105 0.895 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.116 0.884 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.105 0.895 48 H 0.082 0.918 49 H 0.117 0.883 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.064 2.213 3.387 5.074 hybrid contribution 1.378 0.103 -1.030 1.724 sum 4.442 2.315 2.357 5.536 Atomic orbital electron populations 1.22457 0.74842 1.05816 1.04966 1.44000 1.07649 1.04791 1.52076 1.22227 0.89992 0.92453 1.05952 1.18894 0.92873 0.94207 1.12771 1.24211 0.93690 1.08957 0.88664 1.86564 1.44128 1.67208 1.39130 0.94411 0.80492 0.72034 0.86499 1.21447 0.94430 0.95005 1.02710 1.20092 0.90924 0.87609 1.20588 1.17191 0.85392 0.84251 0.75322 1.90775 1.17832 1.85314 1.52493 1.45422 1.10075 1.05204 1.73628 1.22211 0.99805 0.78692 0.96933 0.87561 1.24058 1.02573 0.95773 0.98000 1.22245 0.88887 0.89960 0.95218 0.87401 1.44629 1.12792 1.12327 1.64744 1.18436 0.82703 0.82384 0.76843 1.90912 1.24787 1.71452 1.61438 1.86311 1.36789 1.30544 1.74653 1.22345 0.97633 0.77255 0.93663 1.22477 0.99974 1.04029 0.97297 1.21889 0.94153 1.01104 1.02305 1.22475 1.01957 1.00884 0.98405 1.23712 1.01045 0.92472 0.99494 0.89244 0.87480 0.89495 0.78897 0.89017 0.75850 1.21727 1.22589 0.81981 0.74438 0.88210 0.92049 0.74281 0.92033 0.89500 0.91888 0.91033 0.88377 0.91217 0.91805 0.89539 0.91774 0.88251 0.86040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.00 10.69 127.77 1.37 1.36 16 2 N -0.41 -1.35 3.16 -534.33 -1.69 -3.04 16 3 C 0.03 0.02 9.94 83.48 0.83 0.85 16 4 C -0.18 -0.29 5.46 -20.12 -0.11 -0.40 16 5 C -0.05 0.08 3.01 71.23 0.21 0.29 16 6 O -0.56 -0.79 12.86 -148.98 -1.92 -2.71 16 7 Si 0.76 -2.49 30.60 68.60 2.10 -0.39 16 8 C -0.11 -0.18 10.29 22.57 0.23 0.06 16 9 C -0.08 -0.36 6.89 40.35 0.28 -0.08 16 10 C 0.59 3.36 7.77 86.45 0.67 4.03 16 11 O -0.58 -7.23 14.25 -4.31 -0.06 -7.29 16 12 N -0.69 1.12 5.34 -443.71 -2.37 -1.25 16 13 C 0.13 -0.26 4.21 45.58 0.19 -0.07 16 14 H 0.11 0.20 7.54 -2.39 -0.02 0.18 16 15 C -0.16 0.13 7.69 31.18 0.24 0.37 16 16 C 0.14 -0.26 4.24 45.52 0.19 -0.07 16 17 H 0.11 0.22 7.46 -2.39 -0.02 0.21 16 18 N -0.69 0.61 5.36 -567.60 -3.04 -2.43 16 19 C 0.64 4.11 8.06 129.79 1.05 5.15 16 20 O -0.60 -7.32 11.48 19.80 0.23 -7.10 16 21 O -0.37 -1.91 9.94 -55.48 -0.55 -2.46 16 22 C 0.13 0.39 1.13 -10.79 -0.01 0.38 16 23 C -0.18 -0.70 8.37 71.98 0.60 -0.10 16 24 C -0.14 0.29 8.85 71.98 0.64 0.92 16 25 C -0.18 -0.59 8.37 71.98 0.60 0.01 16 26 C -0.13 0.97 7.58 31.12 0.24 1.20 16 27 H 0.09 -0.21 8.14 -2.39 -0.02 -0.23 16 28 H 0.11 -0.54 8.14 -2.39 -0.02 -0.56 16 29 H 0.09 0.42 6.12 -2.39 -0.01 0.40 16 30 H 0.19 -0.96 6.21 -2.91 -0.02 -0.97 16 31 H 0.09 -0.52 7.96 -2.38 -0.02 -0.54 16 32 H 0.39 -2.54 8.74 -74.06 -0.65 -3.19 16 33 H -0.29 -0.40 7.11 99.48 0.71 0.31 16 34 H -0.30 -1.15 7.11 99.48 0.71 -0.44 16 35 H 0.16 -0.56 7.45 -2.91 -0.02 -0.58 16 36 H 0.42 -3.01 7.63 -92.71 -0.71 -3.72 16 37 H 0.10 -0.23 8.14 -2.39 -0.02 -0.25 16 38 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.42 -2.64 8.84 -92.71 -0.82 -3.46 16 40 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 41 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 42 H 0.06 0.59 5.88 -2.39 -0.01 0.58 16 43 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 44 H 0.10 -0.51 8.14 -2.38 -0.02 -0.53 16 45 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 46 H 0.06 0.55 5.88 -2.39 -0.01 0.54 16 47 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 48 H 0.06 0.15 8.14 -2.38 -0.02 0.13 16 49 H 0.10 -0.83 8.14 -2.39 -0.02 -0.85 16 50 H 0.12 -1.49 8.09 -2.39 -0.02 -1.51 16 Total: 0.00 -25.98 405.26 -1.24 -27.22 By element: Atomic # 1 Polarization: -13.31 SS G_CDS: -1.15 Total: -14.46 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 7.22 Total: 13.90 kcal Atomic # 7 Polarization: 0.38 SS G_CDS: -7.10 Total: -6.72 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -2.30 Total: -19.55 kcal Atomic # 14 Polarization: -2.49 SS G_CDS: 2.10 Total: -0.39 kcal Total: -25.98 -1.24 -27.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941094_10803934.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.120 kcal (2) G-P(sol) polarization free energy of solvation -25.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds