Wall clock time and date at job start Sun Mar 7 2021 00:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37655 * 125.67832 * 2 1 4 4 C 1.46686 * 126.22950 * 0.02562 * 3 2 1 5 5 O 1.21696 * 120.00134 * 354.41406 * 4 3 2 6 6 N 1.34774 * 119.99563 * 174.41304 * 4 3 2 7 7 C 1.46497 * 119.99779 * 185.24476 * 6 4 3 8 8 H 1.09008 * 112.90858 * 28.09973 * 7 6 4 9 9 C 1.53776 * 113.61624 * 159.35043 * 7 6 4 10 10 C 1.53782 * 87.08274 * 89.11745 * 9 7 6 11 11 H 1.09001 * 113.61850 * 140.06819 * 10 9 7 12 12 N 1.46504 * 113.61600 * 270.88832 * 10 9 7 13 13 C 1.34771 * 119.99670 * 272.28780 * 12 10 9 14 14 O 1.21513 * 120.00221 * 359.97438 * 13 12 10 15 15 O 1.34642 * 120.00129 * 180.02562 * 13 12 10 16 16 C 1.45199 * 117.00214 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.47089 * 59.99624 * 16 15 13 18 18 C 1.53001 * 109.46974 * 299.99723 * 16 15 13 19 19 C 1.53004 * 109.47138 * 179.97438 * 16 15 13 20 20 C 1.53780 * 87.08095 * 25.43313 * 10 9 7 21 21 C 1.37861 * 107.53353 * 180.28187 * 3 2 1 22 22 C 1.39837 * 107.08812 * 359.58734 * 21 3 2 23 23 C 1.35447 * 107.86211 * 0.41106 * 22 21 3 24 24 C 1.50700 * 125.56438 * 179.72204 * 23 22 21 25 25 O 1.42906 * 109.47046 * 210.03212 * 24 23 22 26 26 Si 1.86303 * 109.47177 * 330.02674 * 24 23 22 27 27 H 1.08997 * 109.46943 * 94.20699 * 1 2 3 28 28 H 1.09001 * 109.47116 * 214.20017 * 1 2 3 29 29 H 1.08996 * 109.47515 * 334.20130 * 1 2 3 30 30 H 0.96994 * 120.00504 * 5.24567 * 6 4 3 31 31 H 1.09000 * 113.61765 * 334.56945 * 9 7 6 32 32 H 1.08998 * 113.61645 * 203.66159 * 9 7 6 33 33 H 0.96995 * 120.00166 * 92.27527 * 12 10 9 34 34 H 1.08999 * 109.47335 * 300.00292 * 17 16 15 35 35 H 1.09003 * 109.47230 * 60.00049 * 17 16 15 36 36 H 1.09005 * 109.47002 * 179.97438 * 17 16 15 37 37 H 1.09005 * 109.46796 * 180.02562 * 18 16 15 38 38 H 1.08998 * 109.47393 * 300.00004 * 18 16 15 39 39 H 1.08999 * 109.46933 * 60.00025 * 18 16 15 40 40 H 1.08997 * 109.46997 * 300.00309 * 19 16 15 41 41 H 1.09002 * 109.47061 * 59.99692 * 19 16 15 42 42 H 1.08995 * 109.46909 * 179.97438 * 19 16 15 43 43 H 1.08999 * 113.61507 * 89.11437 * 20 10 9 44 44 H 1.09004 * 113.61834 * 220.01977 * 20 10 9 45 45 H 1.08006 * 126.45873 * 179.73773 * 21 3 2 46 46 H 1.08001 * 126.06843 * 180.16315 * 22 21 3 47 47 H 1.08999 * 109.47145 * 90.03140 * 24 23 22 48 48 H 0.96702 * 113.99768 * 180.02562 * 25 24 23 49 49 H 1.48495 * 109.99965 * 300.00256 * 26 24 23 50 50 H 1.48508 * 109.99566 * 61.31892 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2678 1.1182 0.0000 4 6 1.8123 2.5125 0.0005 5 8 0.6263 2.7652 -0.1016 6 7 2.7073 3.5137 0.1141 7 6 2.2457 4.8992 0.2303 8 1 1.2603 4.9810 0.6892 9 6 3.2906 5.8474 0.8417 10 6 3.8008 6.0815 -0.5900 11 1 4.0723 7.1174 -0.7929 12 7 4.8339 5.1303 -1.0077 13 6 6.1310 5.3872 -0.7475 14 8 6.4438 6.4078 -0.1669 15 8 7.0806 4.5134 -1.1318 16 6 8.4566 4.8552 -0.8188 17 6 8.6154 4.9949 0.6965 18 6 8.8192 6.1795 -1.4939 19 6 9.3851 3.7512 -1.3289 20 6 2.3886 5.7073 -1.0703 21 6 3.5779 0.6889 -0.0065 22 6 3.5521 -0.7093 -0.0007 23 6 2.2555 -1.1009 -0.0004 24 6 1.7709 -2.5279 -0.0009 25 8 0.5129 -2.6035 -0.6747 26 14 3.0116 -3.6047 -0.8796 27 1 -0.3633 -0.0754 -1.0249 28 1 -0.3633 -0.8500 0.5776 29 1 -0.3634 0.9252 0.4472 30 1 3.6571 3.3170 0.1189 31 1 4.0123 5.3450 1.4858 32 1 2.8578 6.7358 1.3016 33 1 4.5842 4.3158 -1.4713 34 1 7.9539 5.7812 1.0602 35 1 8.3571 4.0514 1.1774 36 1 9.6486 5.2511 0.9314 37 1 9.8524 6.4359 -1.2593 38 1 8.7061 6.0801 -2.5734 39 1 8.1577 6.9658 -1.1301 40 1 9.1265 2.8080 -0.8477 41 1 9.2720 3.6513 -2.4084 42 1 10.4180 4.0081 -1.0944 43 1 1.7093 6.5573 -1.1330 44 1 2.3821 5.0917 -1.9698 45 1 4.4583 1.3145 -0.0122 46 1 4.4132 -1.3611 -0.0010 47 1 1.6540 -2.8723 1.0266 48 1 0.1402 -3.4949 -0.7128 49 1 3.1799 -3.1454 -2.2816 50 1 4.3156 -3.5597 -0.1703 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941094_10803936.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:25:25 Heat of formation + Delta-G solvation = -62.745877 kcal Electronic energy + Delta-G solvation = -32665.075429 eV Core-core repulsion = 28275.333070 eV Total energy + Delta-G solvation = -4389.742359 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.188 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.75880 -42.08714 -41.08691 -39.52889 -37.89891 -37.66672 -35.48004 -34.98003 -34.00280 -33.48795 -31.49300 -28.39086 -28.32905 -27.62337 -27.32722 -26.87994 -25.66126 -23.82812 -22.96185 -21.68226 -21.27086 -20.77945 -20.28505 -19.30405 -18.83225 -18.32783 -17.71869 -17.46241 -17.20339 -17.03903 -16.77323 -16.40294 -16.15417 -15.88112 -15.61307 -15.37787 -15.30695 -15.16554 -14.89719 -14.58443 -14.48463 -13.94371 -13.71029 -13.67110 -13.60483 -13.38225 -13.37173 -13.19202 -13.14585 -12.99319 -12.92555 -12.89519 -12.77218 -12.59720 -12.33784 -12.12337 -11.97598 -11.53652 -11.41930 -11.26371 -11.15429 -10.61194 -10.42689 -10.19734 -9.93841 -9.22987 -4.94475 0.21237 1.03730 1.13099 1.39242 1.62742 1.68655 1.72150 2.07835 2.13707 2.20716 3.02978 3.19093 3.25826 3.44184 3.54689 3.68666 3.71309 3.72831 3.77139 3.83798 3.91633 4.01265 4.19426 4.29024 4.36594 4.44367 4.45464 4.53192 4.59043 4.61302 4.66412 4.68536 4.70423 4.74311 4.77892 4.80767 4.83906 4.85169 4.89430 4.90597 4.94089 5.06628 5.17671 5.24888 5.30122 5.43435 5.52477 5.58009 5.81601 5.98856 6.24566 6.29440 6.82111 6.94816 7.25667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.398 5.398 3 C -0.081 4.081 4 C 0.593 3.407 5 O -0.573 6.573 6 N -0.692 5.692 7 C 0.116 3.884 8 H 0.099 0.901 9 C -0.145 4.145 10 C 0.135 3.865 11 H 0.100 0.900 12 N -0.690 5.690 13 C 0.648 3.352 14 O -0.584 6.584 15 O -0.369 6.369 16 C 0.129 3.871 17 C -0.180 4.180 18 C -0.181 4.181 19 C -0.139 4.139 20 C -0.140 4.140 21 C -0.128 4.128 22 C -0.231 4.231 23 C 0.050 3.950 24 C -0.063 4.063 25 O -0.566 6.566 26 Si 0.817 3.183 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.408 0.592 31 H 0.070 0.930 32 H 0.128 0.872 33 H 0.411 0.589 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.132 0.868 44 H 0.076 0.924 45 H 0.168 0.832 46 H 0.155 0.845 47 H 0.104 0.896 48 H 0.410 0.590 49 H -0.310 1.310 50 H -0.279 1.279 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.066 -5.751 0.590 5.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.071 5.071 3 C -0.194 4.194 4 C 0.382 3.618 5 O -0.454 6.454 6 N -0.344 5.344 7 C 0.011 3.989 8 H 0.117 0.883 9 C -0.184 4.184 10 C 0.031 3.969 11 H 0.118 0.882 12 N -0.351 5.351 13 C 0.401 3.599 14 O -0.474 6.474 15 O -0.283 6.283 16 C 0.093 3.907 17 C -0.238 4.238 18 C -0.238 4.238 19 C -0.196 4.196 20 C -0.179 4.179 21 C -0.154 4.154 22 C -0.254 4.254 23 C -0.069 4.069 24 C -0.171 4.171 25 O -0.377 6.377 26 Si 0.721 3.279 27 H 0.091 0.909 28 H 0.122 0.878 29 H 0.102 0.898 30 H 0.246 0.754 31 H 0.089 0.911 32 H 0.146 0.854 33 H 0.247 0.753 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.116 0.884 43 H 0.150 0.850 44 H 0.095 0.905 45 H 0.185 0.815 46 H 0.172 0.828 47 H 0.121 0.879 48 H 0.262 0.738 49 H -0.239 1.239 50 H -0.206 1.206 Dipole moment (debyes) X Y Z Total from point charges 0.900 -4.436 0.361 4.541 hybrid contribution 0.222 0.340 0.008 0.406 sum 1.122 -4.097 0.369 4.263 Atomic orbital electron populations 1.22215 0.74911 1.04710 1.04045 1.43958 1.07651 1.04190 1.51264 1.20206 0.91157 0.87677 1.20404 1.17048 0.85333 0.83865 0.75543 1.90786 1.17546 1.85167 1.51886 1.45349 1.09680 1.05428 1.73933 1.22059 0.99423 0.79482 0.97950 0.88256 1.23785 0.97518 1.00384 0.96681 1.21961 0.86223 0.93095 0.95641 0.88217 1.44559 1.02227 1.26188 1.62110 1.18255 0.82378 0.81569 0.77682 1.90922 1.81809 1.28341 1.46370 1.86317 1.17878 1.48321 1.75805 1.22338 0.75779 0.96688 0.95893 1.22480 1.04209 1.03070 0.93996 1.22486 1.03696 0.96946 1.00720 1.21901 0.98369 0.97047 1.02276 1.23772 0.94737 1.01572 0.97851 1.21548 0.94687 0.95219 1.03950 1.20787 0.95222 0.95997 1.13414 1.20790 0.90737 0.88630 1.06695 1.24774 0.95325 0.93650 1.03399 1.86415 1.34825 1.37355 1.79088 0.94401 0.75144 0.83816 0.74566 0.90869 0.87832 0.89779 0.75432 0.91103 0.85372 0.75252 0.91579 0.91765 0.89581 0.89501 0.92091 0.91616 0.91040 0.91344 0.88364 0.85003 0.90504 0.81483 0.82778 0.87856 0.73766 1.23858 1.20616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.48 9.27 127.77 1.18 1.66 16 2 N -0.40 -3.23 3.16 -519.72 -1.64 -4.87 16 3 C -0.08 -0.64 6.88 40.35 0.28 -0.36 16 4 C 0.59 4.69 7.77 86.45 0.67 5.36 16 5 O -0.57 -7.85 14.36 -4.34 -0.06 -7.91 16 6 N -0.69 -0.88 4.89 -443.99 -2.17 -3.05 16 7 C 0.12 -0.08 4.23 45.52 0.19 0.11 16 8 H 0.10 0.17 7.65 -2.38 -0.02 0.16 16 9 C -0.14 0.38 7.61 31.12 0.24 0.61 16 10 C 0.13 -0.24 4.03 45.52 0.18 -0.06 16 11 H 0.10 -0.04 7.98 -2.39 -0.02 -0.06 16 12 N -0.69 0.09 4.42 -567.60 -2.51 -2.41 16 13 C 0.65 3.40 8.06 129.79 1.05 4.45 16 14 O -0.58 -5.96 11.78 19.80 0.23 -5.73 16 15 O -0.37 -1.57 9.94 -55.52 -0.55 -2.12 16 16 C 0.13 0.27 1.13 -10.79 -0.01 0.26 16 17 C -0.18 -0.39 8.37 71.98 0.60 0.21 16 18 C -0.18 -0.51 8.37 71.98 0.60 0.09 16 19 C -0.14 0.34 8.85 71.98 0.64 0.97 16 20 C -0.14 0.48 7.57 31.12 0.24 0.72 16 21 C -0.13 -0.56 10.35 22.57 0.23 -0.33 16 22 C -0.23 -1.18 9.37 22.01 0.21 -0.97 16 23 C 0.05 0.28 6.18 41.34 0.26 0.53 16 24 C -0.06 0.14 2.89 71.24 0.21 0.34 16 25 O -0.57 1.80 10.46 -148.98 -1.56 0.24 16 26 Si 0.82 -3.32 31.22 68.60 2.14 -1.18 16 27 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.10 0.21 7.08 -2.39 -0.02 0.19 16 29 H 0.08 0.71 6.21 -2.39 -0.01 0.70 16 30 H 0.41 -0.66 6.10 -92.71 -0.57 -1.23 16 31 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.13 -0.72 8.14 -2.39 -0.02 -0.74 16 33 H 0.41 -1.08 7.82 -92.71 -0.72 -1.81 16 34 H 0.07 0.47 5.88 -2.39 -0.01 0.46 16 35 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 36 H 0.09 -0.08 8.14 -2.38 -0.02 -0.10 16 37 H 0.09 -0.04 8.14 -2.38 -0.02 -0.06 16 38 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.06 0.51 5.88 -2.39 -0.01 0.50 16 40 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 41 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 42 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 43 H 0.13 -0.88 8.14 -2.39 -0.02 -0.90 16 44 H 0.08 -0.14 8.14 -2.38 -0.02 -0.16 16 45 H 0.17 -0.25 7.45 -2.91 -0.02 -0.27 16 46 H 0.15 0.36 6.69 -2.91 -0.02 0.34 16 47 H 0.10 -0.67 7.96 -2.39 -0.02 -0.69 16 48 H 0.41 -5.74 8.74 -74.06 -0.65 -6.39 16 49 H -0.31 -1.74 7.11 99.48 0.71 -1.04 16 50 H -0.28 -0.05 6.87 99.48 0.68 0.64 16 Total: 0.00 -23.91 398.30 -0.30 -24.21 By element: Atomic # 1 Polarization: -9.86 SS G_CDS: -0.94 Total: -10.80 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 6.76 Total: 13.62 kcal Atomic # 7 Polarization: -4.02 SS G_CDS: -6.32 Total: -10.34 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -1.94 Total: -15.51 kcal Atomic # 14 Polarization: -3.32 SS G_CDS: 2.14 Total: -1.18 kcal Total: -23.91 -0.30 -24.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941094_10803936.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.540 kcal (2) G-P(sol) polarization free energy of solvation -23.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds