Wall clock time and date at job start Sun Mar 7 2021 00:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47031 * 2 1 4 4 C 1.53002 * 109.46865 * 240.00325 * 2 1 3 5 5 O 1.45195 * 109.47279 * 120.00289 * 2 1 3 6 6 C 1.34641 * 116.99837 * 59.99873 * 5 2 1 7 7 O 1.21505 * 120.00094 * 0.02562 * 6 5 2 8 8 N 1.34779 * 120.00053 * 179.97438 * 6 5 2 9 9 C 1.46491 * 120.00255 * 180.02562 * 8 6 5 10 10 H 1.09005 * 112.84900 * 336.19434 * 9 8 6 11 11 C 1.53955 * 113.74735 * 107.40135 * 9 8 6 12 12 C 1.53780 * 87.02222 * 139.94183 * 11 9 8 13 13 H 1.09001 * 113.61224 * 89.23044 * 12 11 9 14 14 N 1.46496 * 113.61866 * 220.04903 * 12 11 9 15 15 C 1.34777 * 120.00345 * 254.14191 * 14 12 11 16 16 O 1.21718 * 119.99600 * 359.71671 * 15 14 12 17 17 C 1.46566 * 120.00308 * 179.97438 * 15 14 12 18 18 C 1.40850 * 126.58241 * 179.43503 * 17 15 14 19 19 C 1.40096 * 132.86290 * 0.02562 * 18 17 15 20 20 C 1.36443 * 119.25378 * 179.97438 * 19 18 17 21 21 C 1.50699 * 120.29662 * 180.02562 * 20 19 18 22 22 O 1.42905 * 109.47195 * 240.00199 * 21 20 19 23 23 Si 1.86300 * 109.47302 * 120.00088 * 21 20 19 24 24 C 1.40163 * 119.41069 * 359.97438 * 20 19 18 25 25 C 1.35194 * 120.31642 * 359.58590 * 24 20 19 26 26 N 1.36242 * 120.70037 * 0.65364 * 25 24 20 27 27 N 1.40017 * 132.01049 * 179.22736 * 26 25 24 28 28 C 1.30733 * 109.60844 * 180.02562 * 27 26 25 29 29 C 1.53781 * 87.17390 * 334.64392 * 12 11 9 30 30 H 1.09004 * 109.47034 * 299.99390 * 1 2 3 31 31 H 1.08998 * 109.47157 * 59.99947 * 1 2 3 32 32 H 1.09005 * 109.47116 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47128 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47063 * 300.00512 * 3 2 1 35 35 H 1.09004 * 109.46713 * 60.00413 * 3 2 1 36 36 H 1.08992 * 109.47440 * 299.99755 * 4 2 1 37 37 H 1.09007 * 109.46941 * 60.00067 * 4 2 1 38 38 H 1.09000 * 109.47280 * 179.97438 * 4 2 1 39 39 H 0.97001 * 119.99613 * 359.97438 * 8 6 5 40 40 H 1.08999 * 113.60808 * 25.42452 * 11 9 8 41 41 H 1.08998 * 113.66627 * 254.47228 * 11 9 8 42 42 H 0.97004 * 120.00003 * 74.13413 * 14 12 11 43 43 H 1.07998 * 120.37408 * 359.97401 * 19 18 17 44 44 H 1.08997 * 109.47127 * 359.97438 * 21 20 19 45 45 H 0.96704 * 113.99760 * 299.99409 * 22 21 20 46 46 H 1.48499 * 110.00277 * 179.97438 * 23 21 20 47 47 H 1.48500 * 109.99874 * 301.32245 * 23 21 20 48 48 H 1.08003 * 119.84186 * 180.02562 * 24 20 19 49 49 H 1.07999 * 119.64468 * 179.90765 * 25 24 20 50 50 H 1.08002 * 125.63115 * 179.97438 * 28 27 26 51 51 H 1.08994 * 113.61872 * 139.93897 * 29 12 11 52 52 H 1.09004 * 113.61152 * 270.76015 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9724 1.3382 7 8 0.9517 -2.5097 0.5034 8 7 2.0681 -2.6659 2.4164 9 6 1.6750 -4.0673 2.5823 10 1 0.7605 -4.3169 2.0442 11 6 2.8219 -5.0656 2.3416 12 6 2.2733 -5.8611 3.5378 13 1 1.5225 -6.6017 3.2623 14 7 3.3176 -6.4067 4.4085 15 6 3.5962 -7.7251 4.3823 16 8 2.9766 -8.4633 3.6389 17 6 4.6413 -8.2708 5.2529 18 6 5.0366 -9.6194 5.3462 19 6 4.6064 -10.7855 4.6998 20 6 5.1971 -11.9760 5.0091 21 6 4.7531 -13.2447 4.3277 22 8 4.2754 -14.1693 5.3071 23 14 6.1928 -13.9958 3.4146 24 6 6.2213 -12.0082 5.9655 25 6 6.6264 -10.8690 6.5702 26 7 6.0395 -9.6763 6.2715 27 7 6.2550 -8.3792 6.7529 28 6 5.4374 -7.5495 6.1594 29 6 1.6762 -4.5383 4.0462 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6767 -1.7488 -1.2494 37 1 1.6766 -0.2072 -2.1393 38 1 3.1300 -0.7208 -1.2496 39 1 2.6283 -2.2372 3.0822 40 1 3.8117 -4.6434 2.5151 41 1 2.7476 -5.5970 1.3928 42 1 3.8087 -5.8190 5.0038 43 1 3.8161 -10.7427 3.9650 44 1 3.9536 -13.0177 3.6225 45 1 4.9354 -14.4169 5.9690 46 1 5.7681 -15.2480 2.7387 47 1 6.7189 -13.0318 2.4150 48 1 6.6939 -12.9466 6.2153 49 1 7.4155 -10.9066 7.3066 50 1 5.3827 -6.4855 6.3363 51 1 0.6783 -4.6446 4.4716 52 1 2.3518 -3.9724 4.6877 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941094_11618758.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:25:28 Heat of formation + Delta-G solvation = -19.125197 kcal Electronic energy + Delta-G solvation = -35298.362467 eV Core-core repulsion = 30460.407310 eV Total energy + Delta-G solvation = -4837.955157 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.183 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -43.30831 -41.94707 -40.99419 -39.63880 -39.21187 -37.92238 -37.20945 -35.59017 -34.88683 -34.22855 -33.35709 -32.08883 -30.29433 -28.39482 -28.32166 -27.44729 -26.81142 -26.05762 -24.87612 -23.91336 -23.14023 -22.66437 -21.61030 -21.25837 -20.75100 -19.28260 -19.01321 -18.48725 -18.13176 -17.73470 -17.49224 -17.21041 -17.15606 -16.98914 -16.53478 -16.25503 -15.93837 -15.82192 -15.63844 -15.50937 -15.37063 -15.32571 -14.74183 -14.50292 -14.37493 -14.23868 -14.02024 -13.90960 -13.53145 -13.50257 -13.38522 -13.16337 -13.13947 -12.94784 -12.88851 -12.61217 -12.49262 -12.42889 -12.37985 -12.22113 -12.20051 -11.99935 -11.98399 -11.57305 -11.41964 -11.13835 -10.99484 -10.78852 -10.27722 -10.26568 -10.04194 -8.80472 -5.08662 -0.57416 -0.10627 1.00319 1.04244 1.13173 1.19477 1.66805 1.70652 1.95228 2.07328 2.22947 2.45872 3.07457 3.15185 3.23455 3.34899 3.46429 3.48490 3.60003 3.72007 3.74746 3.76772 3.80884 3.85586 3.87677 3.92176 3.97597 4.19013 4.35005 4.38846 4.43485 4.56012 4.58628 4.60847 4.62484 4.64963 4.72058 4.74085 4.78882 4.83079 4.84484 4.85637 4.95682 4.99662 5.09911 5.12329 5.16733 5.24542 5.26733 5.28799 5.36867 5.54587 5.57427 5.67802 6.29074 6.37900 6.59026 6.76087 7.27401 7.32174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.137 4.137 4 C -0.181 4.181 5 O -0.368 6.368 6 C 0.642 3.358 7 O -0.596 6.596 8 N -0.684 5.684 9 C 0.141 3.859 10 H 0.105 0.895 11 C -0.162 4.162 12 C 0.128 3.872 13 H 0.099 0.901 14 N -0.700 5.700 15 C 0.598 3.402 16 O -0.596 6.596 17 C -0.347 4.347 18 C 0.150 3.850 19 C -0.136 4.136 20 C -0.054 4.054 21 C -0.077 4.077 22 O -0.546 6.546 23 Si 0.816 3.184 24 C -0.147 4.147 25 C 0.115 3.885 26 N -0.273 5.273 27 N -0.338 5.338 28 C 0.133 3.867 29 C -0.128 4.128 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.420 0.580 40 H 0.103 0.897 41 H 0.057 0.943 42 H 0.416 0.584 43 H 0.136 0.864 44 H 0.105 0.895 45 H 0.401 0.599 46 H -0.290 1.290 47 H -0.304 1.304 48 H 0.222 0.778 49 H 0.214 0.786 50 H 0.236 0.764 51 H 0.095 0.905 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.892 0.841 6.846 9.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.194 4.194 4 C -0.238 4.238 5 O -0.282 6.282 6 C 0.396 3.604 7 O -0.487 6.487 8 N -0.344 5.344 9 C 0.037 3.963 10 H 0.123 0.877 11 C -0.203 4.203 12 C 0.022 3.978 13 H 0.117 0.883 14 N -0.351 5.351 15 C 0.388 3.612 16 O -0.478 6.478 17 C -0.362 4.362 18 C 0.029 3.971 19 C -0.156 4.156 20 C -0.060 4.060 21 C -0.185 4.185 22 O -0.355 6.355 23 Si 0.720 3.280 24 C -0.167 4.167 25 C -0.010 4.010 26 N -0.037 5.037 27 N -0.158 5.158 28 C -0.048 4.048 29 C -0.166 4.166 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.080 0.920 39 H 0.258 0.742 40 H 0.121 0.879 41 H 0.076 0.924 42 H 0.254 0.746 43 H 0.154 0.846 44 H 0.122 0.878 45 H 0.252 0.748 46 H -0.217 1.217 47 H -0.231 1.231 48 H 0.239 0.761 49 H 0.231 0.769 50 H 0.252 0.748 51 H 0.114 0.886 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.842 0.004 5.711 8.912 hybrid contribution -1.173 0.937 -0.737 1.673 sum 5.669 0.941 4.973 7.600 Atomic orbital electron populations 1.22476 0.94039 1.03659 1.03563 1.22347 0.94467 0.92615 0.81475 1.21886 1.02460 0.90775 1.04289 1.22476 1.01613 1.02197 0.97493 1.86309 1.71485 1.23231 1.47187 1.18444 0.78579 0.80749 0.82627 1.90913 1.42417 1.71080 1.44269 1.44612 1.54813 1.11847 1.23109 1.22265 0.98381 0.77308 0.98376 0.87717 1.24052 1.00081 0.97101 0.99028 1.22097 0.90504 0.94396 0.90831 0.88338 1.45416 1.38971 1.07302 1.43363 1.17112 0.81090 0.82404 0.80576 1.90761 1.53717 1.59871 1.43496 1.19708 1.11186 0.91948 1.13375 1.19479 0.90498 0.95494 0.91666 1.20638 1.02534 0.90056 1.02355 1.20768 0.94481 0.95304 0.95424 1.25331 1.08756 0.88352 0.96069 1.86588 1.43657 1.61799 1.43481 0.93884 0.77169 0.76005 0.80969 1.21362 0.97993 1.00186 0.97135 1.22480 0.98323 0.79877 1.00322 1.46381 1.23321 1.08132 1.25879 1.77551 1.27338 0.85285 1.25605 1.24605 0.89105 1.01322 0.89760 1.23698 1.03995 0.93873 0.95064 0.91760 0.89545 0.91885 0.91159 0.88399 0.91018 0.91959 0.89516 0.91970 0.74216 0.87890 0.92394 0.74583 0.84610 0.87789 0.74786 1.21681 1.23141 0.76112 0.76891 0.74752 0.88613 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.67 8.37 71.98 0.60 -0.07 16 2 C 0.13 0.42 1.13 -10.79 -0.01 0.41 16 3 C -0.14 0.27 8.85 71.98 0.64 0.91 16 4 C -0.18 -0.75 8.37 71.98 0.60 -0.15 16 5 O -0.37 -1.98 9.94 -55.51 -0.55 -2.53 16 6 C 0.64 4.39 8.06 129.79 1.05 5.44 16 7 O -0.60 -7.75 11.48 19.82 0.23 -7.52 16 8 N -0.68 0.34 5.36 -567.33 -3.04 -2.70 16 9 C 0.14 -0.13 4.24 45.58 0.19 0.06 16 10 H 0.10 0.37 7.46 -2.38 -0.02 0.35 16 11 C -0.16 -0.02 7.70 31.18 0.24 0.22 16 12 C 0.13 -0.06 4.21 45.52 0.19 0.13 16 13 H 0.10 0.47 7.50 -2.39 -0.02 0.45 16 14 N -0.70 0.59 5.35 -444.10 -2.38 -1.79 16 15 C 0.60 4.80 7.78 86.41 0.67 5.47 16 16 O -0.60 -9.94 15.32 -4.41 -0.07 -10.01 16 17 C -0.35 -2.16 6.17 -19.90 -0.12 -2.28 16 18 C 0.15 1.09 6.76 39.50 0.27 1.36 16 19 C -0.14 -0.87 9.35 22.30 0.21 -0.66 16 20 C -0.05 0.07 4.53 -19.82 -0.09 -0.02 16 21 C -0.08 0.18 2.84 71.24 0.20 0.38 16 22 O -0.55 1.76 12.88 -148.98 -1.92 -0.16 16 23 Si 0.82 -3.99 31.96 68.60 2.19 -1.80 16 24 C -0.15 1.33 8.38 22.04 0.18 1.51 16 25 C 0.12 -0.65 11.18 83.31 0.93 0.28 16 26 N -0.27 -0.85 3.86 -187.28 -0.72 -1.58 16 27 N -0.34 -1.31 12.57 -56.62 -0.71 -2.03 16 28 C 0.13 0.05 11.44 85.42 0.98 1.03 16 29 C -0.13 0.84 7.58 31.12 0.24 1.07 16 30 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 32 H 0.06 0.58 5.88 -2.38 -0.01 0.57 16 33 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 34 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 35 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 36 H 0.06 0.62 5.88 -2.39 -0.01 0.60 16 37 H 0.09 0.06 8.14 -2.38 -0.02 0.05 16 38 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 39 H 0.42 -2.63 8.84 -92.71 -0.82 -3.45 16 40 H 0.10 -0.23 8.14 -2.39 -0.02 -0.25 16 41 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 42 H 0.42 -3.51 7.63 -92.71 -0.71 -4.22 16 43 H 0.14 1.42 7.01 -2.91 -0.02 1.40 16 44 H 0.10 0.14 7.71 -2.39 -0.02 0.12 16 45 H 0.40 -5.78 8.09 -74.05 -0.60 -6.38 16 46 H -0.29 -0.68 7.11 99.48 0.71 0.03 16 47 H -0.30 -1.01 7.11 99.48 0.71 -0.31 16 48 H 0.22 -4.63 7.31 -2.91 -0.02 -4.65 16 49 H 0.21 -2.83 8.06 -2.91 -0.02 -2.86 16 50 H 0.24 -2.33 7.46 -2.91 -0.02 -2.35 16 51 H 0.10 -0.65 8.14 -2.39 -0.02 -0.67 16 52 H 0.12 -1.52 8.09 -2.38 -0.02 -1.54 16 Total: 0.00 -37.27 428.20 -1.10 -38.37 By element: Atomic # 1 Polarization: -22.26 SS G_CDS: -1.09 Total: -23.36 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 6.97 Total: 15.10 kcal Atomic # 7 Polarization: -1.24 SS G_CDS: -6.85 Total: -8.10 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -2.31 Total: -20.22 kcal Atomic # 14 Polarization: -3.99 SS G_CDS: 2.19 Total: -1.80 kcal Total: -37.27 -1.10 -38.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941094_11618758.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.243 kcal (2) G-P(sol) polarization free energy of solvation -37.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds