Wall clock time and date at job start Sun Mar 7 2021 00:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35451 * 125.56190 * 2 1 4 4 C 1.50696 * 126.06921 * 0.02562 * 3 2 1 5 5 O 1.42898 * 109.47380 * 244.08701 * 4 3 2 6 6 Si 1.86301 * 109.47344 * 124.08679 * 4 3 2 7 7 C 1.39835 * 107.86519 * 180.02562 * 3 2 1 8 8 C 1.50701 * 126.46079 * 179.97438 * 7 3 2 9 9 C 1.37876 * 107.08217 * 359.97438 * 7 3 2 10 10 C 1.46676 * 126.23296 * 179.97438 * 9 7 3 11 11 O 1.21698 * 119.99703 * 0.02562 * 10 9 7 12 12 N 1.34781 * 120.00211 * 180.02562 * 10 9 7 13 13 C 1.46496 * 120.00047 * 180.02562 * 12 10 9 14 14 H 1.08999 * 112.85021 * 336.19676 * 13 12 10 15 15 C 1.53951 * 113.74381 * 107.39964 * 13 12 10 16 16 C 1.53778 * 87.02158 * 139.94325 * 15 13 12 17 17 H 1.08996 * 113.61494 * 89.22957 * 16 15 13 18 18 N 1.46503 * 113.61725 * 220.05388 * 16 15 13 19 19 C 1.34780 * 119.99580 * 254.13599 * 18 16 15 20 20 O 1.21510 * 120.00206 * 359.72301 * 19 18 16 21 21 O 1.34639 * 119.99794 * 179.72305 * 19 18 16 22 22 C 1.45202 * 116.99972 * 179.97438 * 21 19 18 23 23 C 1.52998 * 109.46923 * 59.99913 * 22 21 19 24 24 C 1.52992 * 109.47224 * 180.02562 * 22 21 19 25 25 C 1.53003 * 109.46915 * 299.99936 * 22 21 19 26 26 C 1.53774 * 113.61414 * 205.00037 * 13 12 10 27 27 N 1.35530 * 125.56370 * 180.30406 * 2 1 3 28 28 H 1.09002 * 109.47045 * 84.77984 * 1 2 3 29 29 H 1.08995 * 109.47192 * 204.77846 * 1 2 3 30 30 H 1.09003 * 109.47362 * 324.77887 * 1 2 3 31 31 H 1.08998 * 109.47417 * 4.08528 * 4 3 2 32 32 H 0.96707 * 113.99902 * 300.00303 * 5 4 3 33 33 H 1.48494 * 110.00137 * 182.69967 * 6 4 3 34 34 H 1.48503 * 109.99966 * 304.01837 * 6 4 3 35 35 H 1.09000 * 109.47006 * 270.01811 * 8 7 3 36 36 H 1.09002 * 109.46807 * 30.01314 * 8 7 3 37 37 H 1.09002 * 109.47202 * 150.01699 * 8 7 3 38 38 H 0.96997 * 119.99835 * 359.97438 * 12 10 9 39 39 H 1.09005 * 113.60972 * 25.42642 * 15 13 12 40 40 H 1.08994 * 113.67004 * 254.47348 * 15 13 12 41 41 H 0.96994 * 120.00421 * 73.85988 * 18 16 15 42 42 H 1.08996 * 109.47162 * 60.00071 * 23 22 21 43 43 H 1.09003 * 109.46809 * 180.02562 * 23 22 21 44 44 H 1.08999 * 109.47120 * 299.99654 * 23 22 21 45 45 H 1.09001 * 109.47511 * 59.99790 * 24 22 21 46 46 H 1.08993 * 109.47586 * 179.97438 * 24 22 21 47 47 H 1.09001 * 109.47323 * 300.00101 * 24 22 21 48 48 H 1.09001 * 109.46799 * 60.00049 * 25 22 21 49 49 H 1.09003 * 109.47197 * 179.97438 * 25 22 21 50 50 H 1.08996 * 109.47416 * 300.00074 * 25 22 21 51 51 H 1.09000 * 113.61958 * 105.38777 * 26 13 12 52 52 H 1.09000 * 113.61319 * 334.48122 * 26 13 12 53 53 H 0.97001 * 125.68048 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 1.8199 2.5321 0.0005 5 8 2.2281 3.1700 -1.2112 6 14 2.5589 3.4313 1.4552 7 6 3.6270 0.6768 -0.0006 8 6 4.8486 1.5592 -0.0014 9 6 3.6122 -0.7019 -0.0004 10 6 4.7859 -1.5815 -0.0013 11 8 5.9049 -1.1029 -0.0020 12 7 4.6253 -2.9197 -0.0015 13 6 5.7976 -3.7982 -0.0019 14 1 6.6873 -3.3165 -0.4074 15 6 6.0413 -4.5073 1.3427 16 6 6.4088 -5.7570 0.5255 17 1 7.4654 -5.8123 0.2635 18 7 5.8991 -7.0047 1.0997 19 6 6.7414 -7.8545 1.7201 20 8 7.9244 -7.5883 1.7986 21 8 6.2721 -8.9985 2.2528 22 6 7.2364 -9.8662 2.9051 23 6 7.8976 -9.1148 4.0623 24 6 6.5228 -11.1076 3.4440 25 6 8.3051 -10.2907 1.8958 26 6 5.5247 -5.1893 -0.5975 27 7 2.2953 -1.1025 -0.0059 28 1 -0.3633 0.0935 -1.0234 29 1 -0.3633 -0.9330 0.4307 30 1 -0.3634 0.8395 0.5927 31 1 0.7326 2.5539 0.0742 32 1 3.1859 3.1874 -1.3432 33 1 2.0474 4.8245 1.5043 34 1 2.2220 2.7218 2.7155 35 1 5.1424 1.7721 -1.0292 36 1 4.6223 2.4934 0.5127 37 1 5.6646 1.0505 0.5119 38 1 3.7334 -3.3011 -0.0006 39 1 5.1392 -4.6277 1.9426 40 1 6.8760 -4.0953 1.9097 41 1 4.9548 -7.2173 1.0371 42 1 7.1362 -8.8123 4.7813 43 1 8.6218 -9.7660 4.5517 44 1 8.4061 -8.2306 3.6780 45 1 6.0520 -11.6428 2.6193 46 1 7.2466 -11.7592 3.9333 47 1 5.7611 -10.8055 4.1629 48 1 8.8135 -9.4065 1.5116 49 1 9.0292 -10.9418 2.3856 50 1 7.8341 -10.8260 1.0714 51 1 5.9430 -5.3273 -1.5945 52 1 4.4811 -5.4965 -0.5290 53 1 1.9834 -2.0210 -0.0111 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941094_12297754.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:25:31 Heat of formation + Delta-G solvation = -89.143148 kcal Electronic energy + Delta-G solvation = -33321.281985 eV Core-core repulsion = 28774.857335 eV Total energy + Delta-G solvation = -4546.424650 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.203 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.67229 -41.94311 -40.91508 -39.48916 -37.93932 -37.73008 -35.65247 -34.99319 -33.82567 -33.57350 -32.62826 -29.23584 -28.39559 -28.32722 -27.78706 -26.83829 -26.62501 -25.44180 -23.33288 -22.22529 -21.58786 -21.00926 -20.83720 -20.09076 -19.39125 -19.05346 -18.09899 -17.64948 -17.22896 -17.21701 -16.79653 -16.55007 -16.14439 -16.06436 -15.66433 -15.51900 -15.36034 -15.19050 -15.07751 -14.68842 -14.40674 -14.30452 -14.11698 -14.00780 -13.83165 -13.62181 -13.56395 -13.39121 -13.19960 -13.15761 -13.11613 -12.95134 -12.89258 -12.66292 -12.60335 -12.50499 -12.42440 -12.36177 -12.21834 -12.03805 -12.00174 -11.42355 -11.14222 -11.04499 -10.54343 -10.32079 -10.11440 -9.55320 -8.98281 -4.92896 0.36599 1.10712 1.22584 1.53279 1.70053 1.73272 1.94050 2.00761 2.13936 2.27157 3.12519 3.30818 3.44966 3.67649 3.71610 3.74990 3.77783 3.79852 3.84123 3.86382 3.91860 4.00990 4.13834 4.34154 4.41996 4.46969 4.54433 4.57010 4.58204 4.58650 4.60639 4.69791 4.71737 4.73849 4.81614 4.82594 4.85281 4.91534 4.92717 4.96267 4.97824 5.05138 5.10080 5.16774 5.23363 5.24502 5.31386 5.36911 5.47463 5.56352 5.70009 5.88939 6.34646 6.38170 6.53883 6.77920 7.10548 7.31121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.082 3.918 3 C -0.228 4.228 4 C -0.025 4.025 5 O -0.556 6.556 6 Si 0.730 3.270 7 C -0.074 4.074 8 C -0.096 4.096 9 C -0.076 4.076 10 C 0.591 3.409 11 O -0.559 6.559 12 N -0.705 5.705 13 C 0.128 3.872 14 H 0.107 0.893 15 C -0.162 4.162 16 C 0.141 3.859 17 H 0.106 0.894 18 N -0.686 5.686 19 C 0.642 3.358 20 O -0.594 6.594 21 O -0.369 6.369 22 C 0.128 3.872 23 C -0.180 4.180 24 C -0.138 4.138 25 C -0.180 4.180 26 C -0.130 4.130 27 N -0.521 5.521 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.388 0.612 33 H -0.290 1.290 34 H -0.294 1.294 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.410 0.590 39 H 0.100 0.900 40 H 0.062 0.938 41 H 0.419 0.581 42 H 0.061 0.939 43 H 0.086 0.914 44 H 0.062 0.938 45 H 0.070 0.930 46 H 0.097 0.903 47 H 0.069 0.931 48 H 0.063 0.937 49 H 0.086 0.914 50 H 0.063 0.937 51 H 0.096 0.904 52 H 0.121 0.879 53 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.449 -5.311 -0.791 7.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.038 4.038 3 C -0.234 4.234 4 C -0.137 4.137 5 O -0.363 6.363 6 Si 0.637 3.363 7 C -0.082 4.082 8 C -0.151 4.151 9 C -0.188 4.188 10 C 0.380 3.620 11 O -0.437 6.437 12 N -0.356 5.356 13 C 0.023 3.977 14 H 0.125 0.875 15 C -0.203 4.203 16 C 0.036 3.964 17 H 0.124 0.876 18 N -0.345 5.345 19 C 0.396 3.604 20 O -0.485 6.485 21 O -0.283 6.283 22 C 0.091 3.909 23 C -0.238 4.238 24 C -0.195 4.195 25 C -0.237 4.237 26 C -0.168 4.168 27 N -0.119 5.119 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.130 0.870 32 H 0.237 0.763 33 H -0.217 1.217 34 H -0.221 1.221 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.247 0.753 39 H 0.118 0.882 40 H 0.081 0.919 41 H 0.257 0.743 42 H 0.080 0.920 43 H 0.105 0.895 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.116 0.884 47 H 0.088 0.912 48 H 0.082 0.918 49 H 0.104 0.896 50 H 0.082 0.918 51 H 0.115 0.885 52 H 0.139 0.861 53 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -4.827 -4.652 -0.034 6.704 hybrid contribution -1.077 -0.962 0.044 1.445 sum -5.904 -5.614 0.010 8.147 Atomic orbital electron populations 1.20595 0.85653 1.04836 1.04300 1.20682 0.94696 0.85480 1.02952 1.19591 0.92773 0.95541 1.15530 1.24225 1.02530 0.90892 0.96018 1.86446 1.29538 1.79515 1.40814 0.93827 0.91824 0.76032 0.74649 1.19996 0.95112 0.91860 1.01279 1.20532 0.93867 0.97396 1.03353 1.19965 0.83458 0.93907 1.21447 1.17156 0.87141 0.82139 0.75589 1.90826 1.25472 1.75702 1.51728 1.45608 1.10123 1.04750 1.75164 1.22191 0.89783 0.89039 0.96725 0.87467 1.24045 1.02843 0.95557 0.97813 1.22257 0.99783 0.79945 0.94400 0.87552 1.44626 1.11556 1.19895 1.58436 1.18446 0.84384 0.80096 0.77488 1.90917 1.16523 1.77421 1.63653 1.86308 1.42863 1.30364 1.68777 1.22340 0.87793 0.88913 0.91812 1.22474 1.01676 1.02089 0.97528 1.21887 1.01646 0.94041 1.01881 1.22476 0.99074 1.02762 0.99436 1.23704 1.02170 0.92084 0.98877 1.41736 1.04393 1.09038 1.56777 0.89352 0.89169 0.89618 0.86979 0.76302 1.21675 1.22055 0.89537 0.89804 0.90812 0.75316 0.88176 0.91925 0.74328 0.91982 0.89533 0.91862 0.91066 0.88402 0.91181 0.91808 0.89553 0.91806 0.88493 0.86127 0.72874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.68 9.97 71.24 0.71 1.39 16 2 C 0.08 -0.15 7.13 41.34 0.29 0.14 16 3 C -0.23 -0.36 4.64 -20.12 -0.09 -0.46 16 4 C -0.02 -0.04 2.87 71.23 0.20 0.17 16 5 O -0.56 -1.51 12.88 -148.98 -1.92 -3.43 16 6 Si 0.73 1.49 29.41 68.60 2.02 3.50 16 7 C -0.07 -0.21 5.81 -19.56 -0.11 -0.32 16 8 C -0.10 -0.05 8.55 71.24 0.61 0.56 16 9 C -0.08 -0.11 7.06 40.35 0.28 0.17 16 10 C 0.59 1.73 7.79 86.45 0.67 2.40 16 11 O -0.56 -5.81 14.40 -4.34 -0.06 -5.87 16 12 N -0.71 3.34 5.36 -443.73 -2.38 0.97 16 13 C 0.13 -0.51 4.24 45.57 0.19 -0.32 16 14 H 0.11 0.05 7.46 -2.39 -0.02 0.03 16 15 C -0.16 0.46 7.70 31.18 0.24 0.69 16 16 C 0.14 -0.46 4.21 45.52 0.19 -0.27 16 17 H 0.11 0.11 7.50 -2.39 -0.02 0.09 16 18 N -0.69 1.58 5.37 -567.59 -3.05 -1.47 16 19 C 0.64 3.39 8.06 129.79 1.05 4.43 16 20 O -0.59 -6.75 11.50 19.81 0.23 -6.52 16 21 O -0.37 -1.52 9.94 -55.48 -0.55 -2.07 16 22 C 0.13 0.29 1.13 -10.80 -0.01 0.28 16 23 C -0.18 -0.55 8.37 71.98 0.60 0.06 16 24 C -0.14 0.39 8.85 71.98 0.64 1.03 16 25 C -0.18 -0.48 8.37 71.98 0.60 0.12 16 26 C -0.13 1.18 7.58 31.12 0.24 1.41 16 27 N -0.52 2.34 5.99 -171.93 -1.03 1.31 16 28 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 29 H 0.09 -0.99 8.14 -2.39 -0.02 -1.01 16 30 H 0.09 -0.59 7.27 -2.39 -0.02 -0.61 16 31 H 0.11 0.03 6.66 -2.39 -0.02 0.01 16 32 H 0.39 -1.33 7.71 -74.05 -0.57 -1.91 16 33 H -0.29 -2.31 7.11 99.48 0.71 -1.60 16 34 H -0.29 -2.36 7.11 99.48 0.71 -1.65 16 35 H 0.09 -0.12 8.14 -2.39 -0.02 -0.14 16 36 H 0.08 -0.32 4.44 -2.39 -0.01 -0.33 16 37 H 0.07 0.34 6.48 -2.39 -0.02 0.32 16 38 H 0.41 -4.73 7.86 -92.71 -0.73 -5.45 16 39 H 0.10 -0.48 8.14 -2.38 -0.02 -0.50 16 40 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 41 H 0.42 -3.30 8.83 -92.71 -0.82 -4.12 16 42 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 43 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 44 H 0.06 0.54 5.88 -2.39 -0.01 0.53 16 45 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 46 H 0.10 -0.57 8.14 -2.39 -0.02 -0.59 16 47 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 48 H 0.06 0.51 5.88 -2.39 -0.01 0.50 16 49 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 50 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 51 H 0.10 -0.90 8.14 -2.39 -0.02 -0.92 16 52 H 0.12 -1.72 8.09 -2.39 -0.02 -1.74 16 53 H 0.43 -5.12 8.19 -92.71 -0.76 -5.87 16 Total: 0.00 -25.71 419.46 -2.29 -28.01 By element: Atomic # 1 Polarization: -24.07 SS G_CDS: -1.86 Total: -25.93 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 6.31 Total: 11.50 kcal Atomic # 7 Polarization: 7.26 SS G_CDS: -6.45 Total: 0.81 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -2.30 Total: -17.89 kcal Atomic # 14 Polarization: 1.49 SS G_CDS: 2.02 Total: 3.50 kcal Total: -25.71 -2.29 -28.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941094_12297754.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.136 kcal (2) G-P(sol) polarization free energy of solvation -25.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds