Wall clock time and date at job start Sun Mar 7 2021 00:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47185 * 2 1 4 4 C 1.53001 * 109.47127 * 240.00130 * 2 1 3 5 5 O 1.45200 * 109.47337 * 119.99939 * 2 1 3 6 6 C 1.34639 * 116.99776 * 60.00110 * 5 2 1 7 7 O 1.21514 * 119.99876 * 359.97438 * 6 5 2 8 8 N 1.34768 * 119.99961 * 180.02562 * 6 5 2 9 9 C 1.46500 * 120.00181 * 179.97438 * 8 6 5 10 10 H 1.08997 * 112.85193 * 336.19893 * 9 8 6 11 11 C 1.53788 * 113.69092 * 107.46282 * 9 8 6 12 12 C 1.53785 * 87.08025 * 139.99169 * 11 9 8 13 13 H 1.09007 * 113.68443 * 89.12834 * 12 11 9 14 14 N 1.46492 * 113.61531 * 220.01816 * 12 11 9 15 15 C 1.34774 * 120.00345 * 252.50431 * 14 12 11 16 16 O 1.21286 * 119.99717 * 359.97438 * 15 14 12 17 17 C 1.50701 * 120.00373 * 180.02562 * 15 14 12 18 18 C 1.50701 * 109.47148 * 179.97438 * 17 15 14 19 19 C 1.38235 * 119.99808 * 89.99755 * 18 17 15 20 20 C 1.38243 * 119.99602 * 179.97438 * 19 18 17 21 21 C 1.38231 * 120.00070 * 0.07188 * 20 19 18 22 22 C 1.50701 * 119.99846 * 179.97438 * 21 20 19 23 23 O 1.42898 * 109.46824 * 119.88886 * 22 21 20 24 24 Si 1.86298 * 109.47254 * 359.89071 * 22 21 20 25 25 C 1.38234 * 119.99869 * 359.88510 * 21 20 19 26 26 C 1.38230 * 119.99865 * 269.97500 * 18 17 15 27 27 C 1.53774 * 87.08337 * 334.57039 * 12 11 9 28 28 H 1.08999 * 109.47012 * 299.99805 * 1 2 3 29 29 H 1.09000 * 109.47058 * 60.00334 * 1 2 3 30 30 H 1.09002 * 109.47110 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47733 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.47410 * 300.00267 * 3 2 1 33 33 H 1.09006 * 109.46837 * 59.99503 * 3 2 1 34 34 H 1.09002 * 109.46972 * 299.99896 * 4 2 1 35 35 H 1.08998 * 109.47033 * 59.99676 * 4 2 1 36 36 H 1.09000 * 109.47340 * 180.02562 * 4 2 1 37 37 H 0.97004 * 120.00586 * 0.02562 * 8 6 5 38 38 H 1.08997 * 113.60913 * 25.44918 * 11 9 8 39 39 H 1.08998 * 113.61455 * 254.54539 * 11 9 8 40 40 H 0.97000 * 119.99885 * 72.50037 * 14 12 11 41 41 H 1.08993 * 109.47576 * 59.99137 * 17 15 14 42 42 H 1.09001 * 109.46592 * 299.99075 * 17 15 14 43 43 H 1.08000 * 120.00616 * 359.70324 * 19 18 17 44 44 H 1.08001 * 119.99556 * 179.97438 * 20 19 18 45 45 H 1.08998 * 109.47369 * 239.88874 * 22 21 20 46 46 H 0.96696 * 114.00259 * 299.99460 * 23 22 21 47 47 H 1.48497 * 110.00208 * 58.67606 * 24 22 21 48 48 H 1.48499 * 110.00250 * 180.02562 * 24 22 21 49 49 H 1.08007 * 119.99474 * 180.10845 * 25 21 20 50 50 H 1.08001 * 120.00350 * 359.97438 * 26 18 17 51 51 H 1.08998 * 113.61667 * 139.97929 * 27 12 11 52 52 H 1.09001 * 113.61425 * 270.88017 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5040 8 7 2.0673 -2.6654 2.4170 9 6 1.6732 -4.0665 2.5836 10 1 0.7589 -4.3160 2.0452 11 6 2.8198 -5.0634 2.3453 12 6 2.2702 -5.8603 3.5403 13 1 1.5191 -6.6006 3.2647 14 7 3.3139 -6.4059 4.4116 15 6 3.5707 -7.7289 4.4086 16 8 2.9374 -8.4679 3.6849 17 6 4.6439 -8.2903 5.3054 18 6 4.7295 -9.7825 5.1129 19 6 5.5774 -10.3084 4.1561 20 6 5.6563 -11.6773 3.9800 21 6 4.8864 -12.5200 4.7596 22 6 4.9721 -14.0122 4.5672 23 8 5.4035 -14.6253 5.7837 24 14 6.1922 -14.3946 3.2123 25 6 4.0392 -11.9940 5.7170 26 6 3.9607 -10.6253 5.8935 27 6 1.6737 -4.5369 4.0477 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7216 -1.2491 37 1 2.6263 -2.2364 3.0837 38 1 3.8091 -4.6408 2.5203 39 1 2.7469 -5.5940 1.3960 40 1 3.8201 -5.8149 4.9907 41 1 4.3998 -8.0717 6.3449 42 1 5.6020 -7.8356 5.0538 43 1 6.1748 -9.6498 3.5432 44 1 6.3184 -12.0882 3.2322 45 1 3.9911 -14.4001 4.2928 46 1 6.2713 -14.3267 6.0885 47 1 7.5264 -13.8431 3.5598 48 1 6.2854 -15.8631 3.0123 49 1 3.4390 -12.6526 6.3273 50 1 3.2988 -10.2144 6.6416 51 1 0.6756 -4.6424 4.4727 52 1 2.3498 -3.9703 4.6881 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941094_12335836.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:25:42 Heat of formation + Delta-G solvation = -100.177801 kcal Electronic energy + Delta-G solvation = -31694.342339 eV Core-core repulsion = 27240.176581 eV Total energy + Delta-G solvation = -4454.165759 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 363.192 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.94555 -41.28687 -40.51806 -39.53051 -37.97325 -37.71416 -35.57143 -34.86329 -34.09499 -33.25131 -31.92143 -29.76091 -28.38025 -28.30850 -26.78317 -26.40101 -25.24783 -23.80452 -23.22220 -22.09853 -21.59133 -21.23297 -20.71713 -19.19545 -18.56384 -18.14417 -17.95133 -17.33195 -17.19662 -17.00802 -16.62252 -16.34189 -16.19884 -16.09623 -15.73445 -15.55399 -15.42772 -15.30519 -14.80225 -14.66768 -14.46597 -14.36678 -14.00634 -13.94160 -13.51155 -13.37513 -13.25957 -13.17911 -13.05455 -12.93394 -12.87687 -12.85008 -12.57153 -12.46943 -12.35674 -12.26332 -12.18452 -12.00495 -11.97100 -11.62254 -11.40585 -11.12305 -10.93285 -10.62758 -10.24483 -9.97847 -9.86196 -9.60537 -4.93684 0.24865 0.46653 1.13788 1.29061 1.56493 1.65095 1.73094 1.91025 2.21572 2.79807 3.16413 3.36664 3.39701 3.50229 3.62301 3.73345 3.78018 3.79960 3.82715 3.88223 3.91991 3.93582 4.06877 4.08258 4.38243 4.44057 4.48445 4.55363 4.57897 4.60131 4.63215 4.65014 4.67341 4.73648 4.75141 4.75449 4.83782 4.86648 4.86944 4.96685 5.00801 5.05049 5.10009 5.14075 5.25998 5.28386 5.38782 5.39236 5.54289 5.56955 5.59193 5.60424 6.03157 6.39107 6.46716 6.60316 7.31653 7.33675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.128 3.872 3 C -0.137 4.137 4 C -0.180 4.180 5 O -0.368 6.368 6 C 0.642 3.358 7 O -0.596 6.596 8 N -0.685 5.685 9 C 0.138 3.862 10 H 0.102 0.898 11 C -0.160 4.160 12 C 0.126 3.874 13 H 0.097 0.903 14 N -0.705 5.705 15 C 0.514 3.486 16 O -0.579 6.579 17 C -0.098 4.098 18 C -0.072 4.072 19 C -0.111 4.111 20 C -0.124 4.124 21 C -0.126 4.126 22 C -0.084 4.084 23 O -0.548 6.548 24 Si 0.762 3.238 25 C -0.108 4.108 26 C -0.116 4.116 27 C -0.130 4.130 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.420 0.580 38 H 0.105 0.895 39 H 0.058 0.942 40 H 0.420 0.580 41 H 0.130 0.870 42 H 0.133 0.867 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.118 0.882 46 H 0.386 0.614 47 H -0.278 1.278 48 H -0.302 1.302 49 H 0.122 0.878 50 H 0.133 0.867 51 H 0.092 0.908 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.758 7.954 3.377 9.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 C -0.194 4.194 4 C -0.238 4.238 5 O -0.282 6.282 6 C 0.396 3.604 7 O -0.487 6.487 8 N -0.344 5.344 9 C 0.033 3.967 10 H 0.120 0.880 11 C -0.201 4.201 12 C 0.020 3.980 13 H 0.115 0.885 14 N -0.357 5.357 15 C 0.301 3.699 16 O -0.457 6.457 17 C -0.137 4.137 18 C -0.072 4.072 19 C -0.129 4.129 20 C -0.141 4.141 21 C -0.127 4.127 22 C -0.193 4.193 23 O -0.356 6.356 24 Si 0.667 3.333 25 C -0.126 4.126 26 C -0.134 4.134 27 C -0.168 4.168 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.258 0.742 38 H 0.123 0.877 39 H 0.077 0.923 40 H 0.258 0.742 41 H 0.148 0.852 42 H 0.151 0.849 43 H 0.159 0.841 44 H 0.157 0.843 45 H 0.136 0.864 46 H 0.235 0.765 47 H -0.205 1.205 48 H -0.230 1.230 49 H 0.140 0.860 50 H 0.151 0.849 51 H 0.110 0.890 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.124 6.575 2.150 7.591 hybrid contribution 0.567 0.043 1.323 1.440 sum 3.691 6.618 3.473 8.336 Atomic orbital electron populations 1.22477 0.94096 1.03658 1.03534 1.22339 0.94416 0.92601 0.81506 1.21889 1.02484 0.90814 1.04259 1.22475 1.01650 1.02202 0.97437 1.86309 1.71496 1.23257 1.47181 1.18454 0.78578 0.80736 0.82668 1.90916 1.42348 1.71086 1.44346 1.44625 1.54878 1.11937 1.22977 1.22275 0.98539 0.77364 0.98488 0.87954 1.24002 0.99992 0.96974 0.99095 1.22051 0.90840 0.94232 0.90916 0.88486 1.45774 1.38367 1.07669 1.43919 1.21042 0.83991 0.82270 0.82567 1.90757 1.52032 1.59634 1.43327 1.20767 0.99718 0.91436 1.01818 1.19609 0.96349 0.95093 0.96170 1.21233 0.98976 0.95164 0.97494 1.21162 0.99593 0.94042 0.99348 1.20332 0.98414 0.95839 0.98075 1.25218 1.08803 0.90485 0.94765 1.86557 1.40652 1.68114 1.40311 0.93967 0.76809 0.78037 0.84453 1.21088 0.98259 0.95411 0.97854 1.21246 0.98794 0.93299 1.00027 1.23705 1.03870 0.94277 0.94985 0.91819 0.89565 0.91862 0.91114 0.88426 0.91076 0.91914 0.89553 0.91897 0.74243 0.87690 0.92333 0.74164 0.85156 0.84937 0.84119 0.84277 0.86398 0.76509 1.20472 1.22990 0.85957 0.84924 0.88973 0.85824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.50 8.37 71.98 0.60 0.10 16 2 C 0.13 0.29 1.13 -10.79 -0.01 0.28 16 3 C -0.14 0.40 8.85 71.98 0.64 1.04 16 4 C -0.18 -0.54 8.37 71.98 0.60 0.07 16 5 O -0.37 -1.52 9.94 -55.49 -0.55 -2.07 16 6 C 0.64 3.47 8.06 129.79 1.05 4.52 16 7 O -0.60 -6.94 11.48 19.80 0.23 -6.72 16 8 N -0.68 1.50 5.36 -567.60 -3.04 -1.54 16 9 C 0.14 -0.41 4.24 45.52 0.19 -0.22 16 10 H 0.10 0.19 7.46 -2.39 -0.02 0.17 16 11 C -0.16 0.50 7.68 31.12 0.24 0.74 16 12 C 0.13 -0.53 4.24 45.52 0.19 -0.34 16 13 H 0.10 0.14 7.46 -2.38 -0.02 0.13 16 14 N -0.70 4.95 5.35 -440.05 -2.36 2.59 16 15 C 0.51 -0.37 7.82 87.66 0.69 0.32 16 16 O -0.58 -5.94 15.63 -3.05 -0.05 -5.99 16 17 C -0.10 0.64 5.83 29.10 0.17 0.81 16 18 C -0.07 -0.04 4.37 -19.87 -0.09 -0.13 16 19 C -0.11 -0.10 9.70 22.27 0.22 0.12 16 20 C -0.12 -0.21 8.67 22.27 0.19 -0.02 16 21 C -0.13 -0.43 5.39 -19.87 -0.11 -0.54 16 22 C -0.08 -0.21 2.82 71.24 0.20 -0.01 16 23 O -0.55 -2.66 12.77 -148.98 -1.90 -4.56 16 24 Si 0.76 0.40 29.79 68.60 2.04 2.45 16 25 C -0.11 -0.47 9.61 22.27 0.21 -0.25 16 26 C -0.12 -0.28 9.70 22.27 0.22 -0.06 16 27 C -0.13 1.16 7.58 31.12 0.24 1.40 16 28 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.06 0.52 5.88 -2.39 -0.01 0.51 16 31 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 32 H 0.10 -0.57 8.14 -2.38 -0.02 -0.59 16 33 H 0.07 -0.24 8.14 -2.38 -0.02 -0.25 16 34 H 0.06 0.54 5.88 -2.39 -0.01 0.52 16 35 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 36 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.42 -3.33 8.84 -92.70 -0.82 -4.14 16 38 H 0.10 -0.62 8.14 -2.39 -0.02 -0.64 16 39 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 40 H 0.42 -6.05 8.73 -92.71 -0.81 -6.86 16 41 H 0.13 -1.50 8.08 -2.39 -0.02 -1.52 16 42 H 0.13 -1.58 8.09 -2.39 -0.02 -1.60 16 43 H 0.14 -0.46 8.06 -2.91 -0.02 -0.49 16 44 H 0.14 -0.28 4.88 -2.91 -0.01 -0.30 16 45 H 0.12 0.23 7.96 -2.39 -0.02 0.21 16 46 H 0.39 -0.43 8.70 -74.06 -0.64 -1.07 16 47 H -0.28 -0.95 7.11 99.48 0.71 -0.25 16 48 H -0.30 -2.38 7.11 99.48 0.71 -1.67 16 49 H 0.12 0.48 8.06 -2.91 -0.02 0.45 16 50 H 0.13 -0.12 8.06 -2.91 -0.02 -0.14 16 51 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 52 H 0.12 -1.78 8.10 -2.39 -0.02 -1.80 16 Total: 0.00 -26.75 422.64 -1.47 -28.22 By element: Atomic # 1 Polarization: -18.90 SS G_CDS: -1.28 Total: -20.18 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 5.44 Total: 7.80 kcal Atomic # 7 Polarization: 6.45 SS G_CDS: -5.40 Total: 1.05 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -2.27 Total: -19.34 kcal Atomic # 14 Polarization: 0.40 SS G_CDS: 2.04 Total: 2.45 kcal Total: -26.75 -1.47 -28.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941094_12335836.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.955 kcal (2) G-P(sol) polarization free energy of solvation -26.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds