Wall clock time and date at job start Sun Mar 7 2021 00:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47091 * 2 1 4 4 C 1.53006 * 109.46956 * 240.00222 * 2 1 3 5 5 O 1.45191 * 109.47306 * 120.00439 * 2 1 3 6 6 C 1.34642 * 117.00343 * 59.99543 * 5 2 1 7 7 O 1.21510 * 119.99597 * 0.02562 * 6 5 2 8 8 N 1.34768 * 120.00231 * 179.97438 * 6 5 2 9 9 C 1.46506 * 120.00198 * 180.02562 * 8 6 5 10 10 H 1.09000 * 112.84502 * 313.94667 * 9 8 6 11 11 C 1.53780 * 113.61308 * 85.14252 * 9 8 6 12 12 C 1.53777 * 87.08207 * 89.11965 * 11 9 8 13 13 H 1.08995 * 113.61528 * 140.06296 * 12 11 9 14 14 N 1.46504 * 113.61330 * 270.88292 * 12 11 9 15 15 C 1.34772 * 119.99959 * 201.85210 * 14 12 11 16 16 O 1.21590 * 119.99746 * 0.02562 * 15 14 12 17 17 C 1.47578 * 120.00246 * 179.97438 * 15 14 12 18 18 C 1.40204 * 119.82836 * 0.02650 * 17 15 14 19 19 C 1.36230 * 120.37785 * 180.02562 * 18 17 15 20 20 C 1.39879 * 119.95633 * 359.93710 * 19 18 17 21 21 C 1.46259 * 133.83683 * 180.02562 * 20 19 18 22 22 C 1.50704 * 126.48040 * 0.02562 * 21 20 19 23 23 O 1.42899 * 109.47478 * 285.00080 * 22 21 20 24 24 Si 1.86299 * 109.46814 * 164.99946 * 22 21 20 25 25 C 1.34448 * 107.03548 * 180.28169 * 21 20 19 26 26 N 1.36564 * 109.98358 * 359.60284 * 25 21 20 27 27 C 1.37830 * 109.86159 * 0.40998 * 26 25 21 28 28 C 1.38647 * 133.38341 * 179.75879 * 27 26 25 29 29 C 1.53781 * 113.61587 * 182.64181 * 9 8 6 30 30 H 1.09004 * 109.46930 * 299.99669 * 1 2 3 31 31 H 1.09002 * 109.47182 * 59.99525 * 1 2 3 32 32 H 1.08999 * 109.47186 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46957 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47495 * 300.00283 * 3 2 1 35 35 H 1.09004 * 109.46963 * 60.00351 * 3 2 1 36 36 H 1.08995 * 109.46952 * 299.99878 * 4 2 1 37 37 H 1.09002 * 109.46969 * 60.00122 * 4 2 1 38 38 H 1.08998 * 109.47094 * 179.97438 * 4 2 1 39 39 H 0.96997 * 120.00261 * 0.02562 * 8 6 5 40 40 H 1.09002 * 113.61170 * 334.56516 * 11 9 8 41 41 H 1.09005 * 113.61332 * 203.67186 * 11 9 8 42 42 H 0.97000 * 120.00005 * 21.85440 * 14 12 11 43 43 H 1.08006 * 119.81386 * 359.95304 * 18 17 15 44 44 H 1.07998 * 120.02146 * 180.02562 * 19 18 17 45 45 H 1.09005 * 109.47073 * 45.00227 * 22 21 20 46 46 H 0.96707 * 113.99638 * 300.00734 * 23 22 21 47 47 H 1.48499 * 110.00030 * 58.68493 * 24 22 21 48 48 H 1.48506 * 110.00106 * 180.02562 * 24 22 21 49 49 H 1.07999 * 125.00750 * 179.74366 * 25 21 20 50 50 H 0.97006 * 125.06687 * 180.17589 * 26 25 21 51 51 H 1.08004 * 120.16730 * 359.97423 * 28 27 26 52 52 H 1.09000 * 113.61381 * 156.33551 * 29 9 8 53 53 H 1.08996 * 113.61481 * 25.42941 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1854 6 6 1.6523 -1.9724 1.3382 7 8 0.9516 -2.5097 0.5035 8 7 2.0681 -2.6658 2.4164 9 6 1.6749 -4.0673 2.5824 10 1 0.6144 -4.2345 2.3938 11 6 2.5948 -5.0564 1.8473 12 6 3.4495 -5.0894 3.1253 13 1 3.8229 -6.0825 3.3753 14 7 4.4949 -4.0635 3.1589 15 6 5.5710 -4.2238 3.9542 16 8 5.6745 -5.2201 4.6435 17 6 6.6244 -3.1907 3.9876 18 6 6.5016 -2.0436 3.1909 19 6 7.4674 -1.0831 3.2127 20 6 8.5887 -1.2385 4.0344 21 6 9.7764 -0.4248 4.2921 22 6 10.1020 0.9079 3.6685 23 8 10.5332 0.7106 2.3205 24 14 11.4603 1.7330 4.6406 25 6 10.5255 -1.0934 5.1862 26 7 9.9104 -2.2637 5.5283 27 6 8.7230 -2.3874 4.8394 28 6 7.7356 -3.3603 4.8105 29 6 2.1761 -4.6967 3.8929 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8901 36 1 1.6767 -1.7488 -1.2493 37 1 1.6767 -0.2073 -2.1393 38 1 3.1300 -0.7209 -1.2496 39 1 2.6277 -2.2370 3.0826 40 1 3.1079 -4.6208 0.9899 41 1 2.1169 -6.0085 1.6169 42 1 4.4124 -3.2689 2.6087 43 1 5.6369 -1.9211 2.5554 44 1 7.3668 -0.2015 2.5970 45 1 9.2138 1.5398 3.6770 46 1 11.3212 0.1562 2.2368 47 1 12.6666 0.8672 4.6633 48 1 11.7904 3.0487 4.0361 49 1 11.4729 -0.7539 5.5781 50 1 10.2589 -2.9129 6.1592 51 1 7.8276 -4.2453 5.4227 52 1 1.5838 -5.5506 4.2218 53 1 2.3513 -3.9708 4.6869 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941094_12335838.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:25:46 Heat of formation + Delta-G solvation = -51.999220 kcal Electronic energy + Delta-G solvation = -36792.943989 eV Core-core repulsion = 32018.989219 eV Total energy + Delta-G solvation = -4773.954770 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.188 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.49945 -42.09999 -41.25157 -39.83763 -38.02789 -37.82837 -37.49502 -35.42221 -34.73950 -33.57014 -33.26155 -30.74394 -30.55525 -28.36219 -28.29457 -26.89013 -26.60549 -26.17570 -24.70307 -23.67052 -23.20637 -21.66334 -21.11515 -20.83296 -20.63343 -19.48840 -19.20461 -18.43486 -17.69718 -17.61528 -17.36352 -17.11164 -16.98768 -16.47588 -16.38926 -16.14204 -15.88255 -15.64376 -15.58592 -15.51370 -15.25585 -15.08740 -14.86386 -14.77868 -14.49215 -14.39947 -13.89715 -13.65096 -13.57897 -13.34577 -13.14461 -13.11920 -12.94947 -12.88542 -12.85837 -12.67946 -12.55696 -12.49326 -12.30384 -12.22661 -12.07308 -11.77077 -11.49539 -11.38264 -11.17068 -11.11543 -10.79825 -10.44877 -10.35758 -10.13054 -9.38408 -8.80864 -4.82842 -0.34211 0.35147 1.08076 1.38101 1.40338 1.64890 1.70897 1.84948 1.87037 2.05353 2.21419 2.84103 3.07066 3.30386 3.48801 3.55866 3.57443 3.68256 3.74544 3.76817 3.80337 3.84840 3.90522 3.94860 4.04301 4.09886 4.29447 4.47813 4.48871 4.50877 4.57857 4.60189 4.61762 4.67387 4.72403 4.75068 4.77514 4.80882 4.81999 4.87128 4.88553 4.93598 4.95437 4.97123 5.10555 5.18183 5.22534 5.27753 5.33718 5.40037 5.46269 5.52138 5.59851 5.60697 5.96633 6.30231 6.37035 6.51700 6.62395 7.06087 7.29979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.130 3.870 3 C -0.139 4.139 4 C -0.181 4.181 5 O -0.367 6.367 6 C 0.647 3.353 7 O -0.585 6.585 8 N -0.690 5.690 9 C 0.136 3.864 10 H 0.098 0.902 11 C -0.148 4.148 12 C 0.112 3.888 13 H 0.098 0.902 14 N -0.700 5.700 15 C 0.566 3.434 16 O -0.573 6.573 17 C -0.137 4.137 18 C -0.109 4.109 19 C -0.081 4.081 20 C -0.078 4.078 21 C -0.224 4.224 22 C -0.049 4.049 23 O -0.554 6.554 24 Si 0.774 3.226 25 C 0.091 3.909 26 N -0.576 5.576 27 C 0.069 3.931 28 C -0.063 4.063 29 C -0.139 4.139 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.412 0.588 40 H 0.068 0.932 41 H 0.125 0.875 42 H 0.407 0.593 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.113 0.887 46 H 0.383 0.617 47 H -0.268 1.268 48 H -0.309 1.309 49 H 0.207 0.793 50 H 0.435 0.565 51 H 0.131 0.869 52 H 0.131 0.869 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.250 3.357 3.417 5.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.094 3.906 3 C -0.196 4.196 4 C -0.238 4.238 5 O -0.281 6.281 6 C 0.401 3.599 7 O -0.475 6.475 8 N -0.350 5.350 9 C 0.032 3.968 10 H 0.116 0.884 11 C -0.187 4.187 12 C 0.006 3.994 13 H 0.116 0.884 14 N -0.352 5.352 15 C 0.355 3.645 16 O -0.454 6.454 17 C -0.142 4.142 18 C -0.129 4.129 19 C -0.099 4.099 20 C -0.084 4.084 21 C -0.231 4.231 22 C -0.158 4.158 23 O -0.362 6.362 24 Si 0.678 3.322 25 C -0.038 4.038 26 N -0.179 5.179 27 C -0.038 4.038 28 C -0.084 4.084 29 C -0.178 4.178 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.249 0.751 40 H 0.086 0.914 41 H 0.143 0.857 42 H 0.245 0.755 43 H 0.158 0.842 44 H 0.156 0.844 45 H 0.131 0.869 46 H 0.232 0.768 47 H -0.194 1.194 48 H -0.237 1.237 49 H 0.224 0.776 50 H 0.275 0.725 51 H 0.149 0.851 52 H 0.149 0.851 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.299 3.053 3.394 5.112 hybrid contribution 0.558 -0.587 -0.865 1.185 sum 2.857 2.466 2.529 4.543 Atomic orbital electron populations 1.22485 0.94156 1.03744 1.03449 1.22321 0.94345 0.92499 0.81466 1.21899 1.02578 0.90935 1.04170 1.22483 1.01739 1.02307 0.97280 1.86313 1.71456 1.23119 1.47255 1.18267 0.78633 0.80730 0.82319 1.90924 1.41725 1.70967 1.43908 1.44545 1.55325 1.11852 1.23321 1.21943 0.99520 0.77823 0.97551 0.88390 1.23779 0.97045 1.01544 0.96296 1.22049 0.87195 0.92549 0.97566 0.88433 1.45631 1.20630 1.24149 1.44770 1.18341 0.81694 0.85544 0.78888 1.90771 1.79102 1.31555 1.43941 1.19425 0.95986 0.96503 1.02248 1.20792 1.00022 0.92858 0.99216 1.20366 0.92084 0.99571 0.97887 1.19525 0.96173 0.94463 0.98201 1.20754 0.96609 1.00010 1.05776 1.24575 1.08695 0.95889 0.86629 1.86578 1.49826 1.73646 1.26112 0.94155 0.75399 0.75648 0.87010 1.22291 0.98861 0.85682 0.96995 1.41799 1.17044 1.20260 1.38787 1.18112 0.90016 0.97320 0.98372 1.20124 0.91579 0.97772 0.98940 1.23756 0.96196 1.02258 0.95540 0.91979 0.89623 0.91662 0.91005 0.88511 0.91189 0.91608 0.89698 0.91781 0.75082 0.91369 0.85698 0.75526 0.84190 0.84446 0.86872 0.76762 1.19398 1.23719 0.77613 0.72498 0.85070 0.85105 0.90046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.43 8.37 71.98 0.60 0.17 16 2 C 0.13 0.22 1.13 -10.79 -0.01 0.20 16 3 C -0.14 0.40 8.85 71.98 0.64 1.04 16 4 C -0.18 -0.37 8.37 71.98 0.60 0.23 16 5 O -0.37 -1.25 9.94 -55.51 -0.55 -1.80 16 6 C 0.65 2.95 8.06 129.79 1.05 3.99 16 7 O -0.59 -5.74 11.82 19.81 0.23 -5.51 16 8 N -0.69 0.72 4.34 -567.61 -2.46 -1.74 16 9 C 0.14 -0.31 4.00 45.52 0.18 -0.13 16 10 H 0.10 -0.09 8.05 -2.39 -0.02 -0.10 16 11 C -0.15 0.35 7.61 31.12 0.24 0.58 16 12 C 0.11 -0.10 4.28 45.52 0.19 0.09 16 13 H 0.10 0.20 7.54 -2.39 -0.02 0.19 16 14 N -0.70 -0.25 4.91 -443.16 -2.18 -2.42 16 15 C 0.57 3.50 7.76 86.71 0.67 4.17 16 16 O -0.57 -7.60 15.95 -4.00 -0.06 -7.66 16 17 C -0.14 -0.59 5.87 -20.08 -0.12 -0.71 16 18 C -0.11 -0.10 9.46 22.28 0.21 0.11 16 19 C -0.08 -0.16 10.03 22.20 0.22 0.06 16 20 C -0.08 -0.22 6.35 -20.14 -0.13 -0.35 16 21 C -0.22 0.25 5.57 -18.64 -0.10 0.15 16 22 C -0.05 0.09 3.06 71.24 0.22 0.31 16 23 O -0.55 -1.10 12.88 -148.98 -1.92 -3.01 16 24 Si 0.77 -3.94 30.83 68.60 2.11 -1.83 16 25 C 0.09 -0.49 10.43 83.09 0.87 0.37 16 26 N -0.58 2.26 6.07 -187.72 -1.14 1.12 16 27 C 0.07 0.15 7.26 38.96 0.28 0.44 16 28 C -0.06 -0.28 9.61 22.63 0.22 -0.06 16 29 C -0.14 0.59 7.57 31.12 0.24 0.83 16 30 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.06 0.49 5.88 -2.39 -0.01 0.47 16 33 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 34 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 35 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 36 H 0.06 0.46 5.88 -2.39 -0.01 0.45 16 37 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 38 H 0.06 0.07 8.14 -2.39 -0.02 0.06 16 39 H 0.41 -1.70 7.94 -92.71 -0.74 -2.44 16 40 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 41 H 0.12 -0.63 8.14 -2.38 -0.02 -0.65 16 42 H 0.41 -1.07 5.18 -92.71 -0.48 -1.55 16 43 H 0.14 -0.53 6.36 -2.91 -0.02 -0.55 16 44 H 0.14 -0.01 8.06 -2.91 -0.02 -0.04 16 45 H 0.11 -0.24 7.96 -2.38 -0.02 -0.26 16 46 H 0.38 -1.45 8.70 -74.05 -0.64 -2.09 16 47 H -0.27 1.00 6.99 99.48 0.70 1.69 16 48 H -0.31 -1.21 7.11 99.48 0.71 -0.50 16 49 H 0.21 -2.51 6.27 -2.91 -0.02 -2.52 16 50 H 0.43 -4.09 8.96 -92.70 -0.83 -4.92 16 51 H 0.13 0.61 7.62 -2.91 -0.02 0.59 16 52 H 0.13 -0.96 8.14 -2.39 -0.02 -0.98 16 53 H 0.08 -0.29 8.13 -2.39 -0.02 -0.31 16 Total: 0.00 -24.36 428.43 -1.56 -25.93 By element: Atomic # 1 Polarization: -12.91 SS G_CDS: -1.67 Total: -14.57 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 6.07 Total: 11.50 kcal Atomic # 7 Polarization: 2.73 SS G_CDS: -5.78 Total: -3.04 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -2.30 Total: -17.98 kcal Atomic # 14 Polarization: -3.94 SS G_CDS: 2.11 Total: -1.83 kcal Total: -24.36 -1.56 -25.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941094_12335838.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.072 kcal (2) G-P(sol) polarization free energy of solvation -24.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds