Wall clock time and date at job start Sun Mar 7 2021 00:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47426 * 2 1 4 4 C 1.53000 * 109.46968 * 240.00133 * 2 1 3 5 5 O 1.45201 * 109.46965 * 120.00458 * 2 1 3 6 6 C 1.34634 * 117.00393 * 59.99884 * 5 2 1 7 7 O 1.21514 * 119.99781 * 359.97438 * 6 5 2 8 8 N 1.34779 * 120.00147 * 179.97438 * 6 5 2 9 9 C 1.46496 * 119.99755 * 179.97438 * 8 6 5 10 10 H 1.08994 * 112.85409 * 313.96784 * 9 8 6 11 11 C 1.53782 * 113.61347 * 85.16955 * 9 8 6 12 12 C 1.53784 * 87.08105 * 89.11334 * 11 9 8 13 13 H 1.09009 * 113.61246 * 140.06879 * 12 11 9 14 14 N 1.46502 * 113.61368 * 270.88143 * 12 11 9 15 15 C 1.34771 * 120.00218 * 201.86243 * 14 12 11 16 16 O 1.21700 * 119.99850 * 0.02562 * 15 14 12 17 17 C 1.46420 * 120.00438 * 180.02562 * 15 14 12 18 18 C 1.34814 * 120.00590 * 179.97438 * 17 15 14 19 19 C 1.47202 * 119.99989 * 179.97438 * 18 17 15 20 20 C 1.39845 * 120.16643 * 180.02562 * 19 18 17 21 21 C 1.37881 * 119.82395 * 179.97438 * 20 19 18 22 22 C 1.38402 * 120.17564 * 0.02562 * 21 20 19 23 23 C 1.50696 * 119.82881 * 179.97438 * 22 21 20 24 24 O 1.42898 * 109.47797 * 64.99570 * 23 22 21 25 25 Si 1.86306 * 109.47057 * 184.99807 * 23 22 21 26 26 C 1.38399 * 120.34389 * 0.24550 * 22 21 20 27 27 C 1.37900 * 120.16655 * 359.49472 * 26 22 21 28 28 C 1.53773 * 87.08400 * 25.43491 * 12 11 9 29 29 H 1.09001 * 109.47263 * 299.99841 * 1 2 3 30 30 H 1.08999 * 109.47112 * 59.99859 * 1 2 3 31 31 H 1.09009 * 109.47465 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47443 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47090 * 300.00154 * 3 2 1 34 34 H 1.09001 * 109.46769 * 59.99857 * 3 2 1 35 35 H 1.09010 * 109.47458 * 299.99912 * 4 2 1 36 36 H 1.08999 * 109.47198 * 60.00061 * 4 2 1 37 37 H 1.09002 * 109.47376 * 180.02562 * 4 2 1 38 38 H 0.96997 * 120.00010 * 0.02562 * 8 6 5 39 39 H 1.09003 * 113.61430 * 334.56224 * 11 9 8 40 40 H 1.08996 * 113.69206 * 203.67071 * 11 9 8 41 41 H 0.97005 * 119.99870 * 21.85865 * 14 12 11 42 42 H 1.08005 * 120.00141 * 0.02562 * 17 15 14 43 43 H 1.07997 * 119.99494 * 0.02562 * 18 17 15 44 44 H 1.08004 * 120.08365 * 359.96363 * 20 19 18 45 45 H 1.08006 * 119.91601 * 180.02562 * 21 20 19 46 46 H 1.08997 * 109.47155 * 304.98996 * 23 22 21 47 47 H 0.96702 * 113.99840 * 59.99388 * 24 23 22 48 48 H 1.48499 * 110.00312 * 179.97438 * 25 23 22 49 49 H 1.48503 * 109.99734 * 301.31315 * 25 23 22 50 50 H 1.07997 * 119.91877 * 179.74637 * 26 22 21 51 51 H 1.08003 * 120.08122 * 180.25036 * 27 26 22 52 52 H 1.08993 * 113.62003 * 89.11373 * 28 12 11 53 53 H 1.09000 * 113.61547 * 220.02028 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0139 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3383 7 8 0.9508 -2.5095 0.5039 8 7 2.0680 -2.6658 2.4166 9 6 1.6738 -4.0670 2.5830 10 1 0.6133 -4.2336 2.3945 11 6 2.5932 -5.0569 1.8483 12 6 3.4479 -5.0900 3.1264 13 1 3.8207 -6.0832 3.3768 14 7 4.4938 -4.0647 3.1595 15 6 5.5700 -4.2254 3.9548 16 8 5.6731 -5.2224 4.6450 17 6 6.6151 -3.2005 3.9884 18 6 7.6914 -3.3610 4.7843 19 6 8.7423 -2.3308 4.8175 20 6 9.8605 -2.4939 5.6414 21 6 10.8409 -1.5248 5.6666 22 6 10.7203 -0.3925 4.8798 23 6 11.7963 0.6620 4.9140 24 8 13.0127 0.1185 4.3975 25 14 11.2741 2.1158 3.8724 26 6 9.6141 -0.2212 4.0661 27 6 8.6276 -1.1840 4.0258 28 6 2.1748 -4.6963 3.8938 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9562 0.8900 35 1 1.6766 -1.7490 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7217 -1.2491 38 1 2.6275 -2.2370 3.0828 39 1 3.1066 -4.6220 0.9908 40 1 2.1159 -6.0092 1.6176 41 1 4.4119 -3.2702 2.6091 42 1 6.5235 -2.3155 3.3762 43 1 7.7829 -4.2457 5.3967 44 1 9.9557 -3.3766 6.2564 45 1 11.7053 -1.6494 6.3021 46 1 11.9520 0.9890 5.9420 47 1 12.9477 -0.1934 3.4845 48 1 12.3265 3.1633 3.8983 49 1 11.0278 1.6772 2.4752 50 1 9.5250 0.6669 3.4580 51 1 7.7669 -1.0507 3.3872 52 1 1.5818 -5.5495 4.2229 53 1 2.3504 -3.9702 4.6875 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941094_12360594.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:26:18 Heat of formation + Delta-G solvation = -70.851437 kcal Electronic energy + Delta-G solvation = -33926.710366 eV Core-core repulsion = 29345.590154 eV Total energy + Delta-G solvation = -4581.120213 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 375.192 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.10731 -41.23743 -40.62455 -39.69363 -37.94707 -37.81118 -35.41126 -35.09720 -34.66625 -33.49186 -32.19213 -31.22954 -28.35512 -28.28130 -27.45891 -26.84950 -25.97030 -24.36868 -23.95623 -23.08023 -22.01369 -21.26826 -20.76154 -20.23937 -19.27280 -18.89333 -18.23036 -17.61948 -17.33002 -17.24402 -16.89082 -16.63156 -16.37500 -16.27492 -16.15910 -15.79551 -15.60992 -15.53895 -15.24647 -15.12690 -14.89353 -14.52468 -14.44010 -14.13656 -13.84595 -13.62526 -13.56171 -13.32985 -13.29235 -13.11106 -13.05990 -12.96534 -12.88802 -12.84639 -12.55706 -12.29635 -12.28235 -12.09286 -12.06241 -11.60071 -11.48658 -11.37449 -11.35711 -11.12351 -11.10087 -10.61664 -10.32750 -10.10417 -9.98083 -9.26487 -4.92242 -0.56570 0.39573 0.87199 1.09131 1.30363 1.59246 1.72671 1.96325 2.08851 2.19583 2.80227 3.08473 3.32036 3.39644 3.49282 3.55905 3.67617 3.75355 3.76328 3.80891 3.81503 3.94158 3.95956 4.06315 4.16369 4.19505 4.35723 4.44846 4.50069 4.57961 4.60280 4.62637 4.69001 4.72416 4.76807 4.78425 4.82513 4.84679 4.87914 4.89922 4.93802 4.94897 4.98222 5.08990 5.12361 5.15062 5.25364 5.28567 5.35163 5.37926 5.47690 5.52917 5.59423 5.61652 5.89926 6.33346 6.45229 6.46322 7.14889 7.31767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.130 3.870 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.366 6.366 6 C 0.647 3.353 7 O -0.587 6.587 8 N -0.687 5.687 9 C 0.137 3.863 10 H 0.095 0.905 11 C -0.147 4.147 12 C 0.112 3.888 13 H 0.093 0.907 14 N -0.699 5.699 15 C 0.547 3.453 16 O -0.584 6.584 17 C -0.213 4.213 18 C -0.016 4.016 19 C -0.081 4.081 20 C -0.102 4.102 21 C -0.107 4.107 22 C -0.108 4.108 23 C -0.088 4.088 24 O -0.549 6.549 25 Si 0.770 3.230 26 C -0.124 4.124 27 C -0.095 4.095 28 C -0.139 4.139 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.414 0.586 39 H 0.069 0.931 40 H 0.121 0.879 41 H 0.410 0.590 42 H 0.161 0.839 43 H 0.125 0.875 44 H 0.137 0.863 45 H 0.130 0.870 46 H 0.124 0.876 47 H 0.386 0.614 48 H -0.307 1.307 49 H -0.278 1.278 50 H 0.148 0.852 51 H 0.155 0.845 52 H 0.127 0.873 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.094 4.865 -0.594 5.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.094 3.906 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.280 6.280 6 C 0.400 3.600 7 O -0.477 6.477 8 N -0.348 5.348 9 C 0.033 3.967 10 H 0.113 0.887 11 C -0.187 4.187 12 C 0.007 3.993 13 H 0.111 0.889 14 N -0.350 5.350 15 C 0.338 3.662 16 O -0.466 6.466 17 C -0.233 4.233 18 C -0.036 4.036 19 C -0.081 4.081 20 C -0.120 4.120 21 C -0.125 4.125 22 C -0.109 4.109 23 C -0.196 4.196 24 O -0.357 6.357 25 Si 0.675 3.325 26 C -0.141 4.141 27 C -0.112 4.112 28 C -0.178 4.178 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.251 0.749 39 H 0.088 0.912 40 H 0.139 0.861 41 H 0.247 0.753 42 H 0.178 0.822 43 H 0.142 0.858 44 H 0.155 0.845 45 H 0.148 0.852 46 H 0.142 0.858 47 H 0.235 0.765 48 H -0.235 1.235 49 H -0.204 1.204 50 H 0.165 0.835 51 H 0.173 0.827 52 H 0.145 0.855 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.013 4.625 -0.683 5.090 hybrid contribution 0.936 -0.602 -0.529 1.232 sum -1.078 4.022 -1.212 4.337 Atomic orbital electron populations 1.22489 0.94313 1.03688 1.03428 1.22318 0.94248 0.92575 0.81476 1.21893 1.02675 0.90803 1.04151 1.22480 1.01804 1.02238 0.97259 1.86306 1.71443 1.23064 1.47231 1.18277 0.78620 0.80736 0.82333 1.90930 1.41739 1.71011 1.44035 1.44499 1.55302 1.11730 1.23294 1.21906 0.99375 0.77960 0.97492 0.88686 1.23759 0.97118 1.01384 0.96400 1.21990 0.87332 0.92668 0.97334 0.88869 1.45603 1.20607 1.24021 1.44804 1.18708 0.82314 0.86331 0.78887 1.90825 1.79357 1.32257 1.44171 1.22979 0.95093 1.00779 1.04458 1.22376 0.91027 0.96143 0.94006 1.19114 0.94994 0.95217 0.98803 1.21622 0.93026 0.99429 0.97880 1.21093 0.98960 0.93462 0.98964 1.20526 0.96297 0.96669 0.97362 1.25310 0.85136 1.01853 1.07331 1.86586 1.33222 1.81747 1.34168 0.94040 0.85363 0.74990 0.78073 1.21207 0.93824 0.99892 0.99162 1.21639 0.99488 0.92236 0.97869 1.23741 0.96324 1.02161 0.95579 0.91983 0.89682 0.91756 0.90788 0.88611 0.91174 0.91734 0.89771 0.91619 0.74872 0.91250 0.86088 0.75292 0.82215 0.85761 0.84491 0.85234 0.85806 0.76463 1.23541 1.20425 0.83510 0.82712 0.85499 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.22 8.37 71.98 0.60 0.39 16 2 C 0.13 0.00 1.13 -10.80 -0.01 -0.02 16 3 C -0.14 0.68 8.85 71.98 0.64 1.31 16 4 C -0.18 -0.07 8.37 71.98 0.60 0.53 16 5 O -0.37 -0.54 9.94 -55.44 -0.55 -1.09 16 6 C 0.65 1.88 8.06 129.79 1.05 2.93 16 7 O -0.59 -5.06 11.82 19.80 0.23 -4.83 16 8 N -0.69 2.03 4.34 -567.60 -2.46 -0.43 16 9 C 0.14 -0.48 4.00 45.52 0.18 -0.29 16 10 H 0.10 -0.15 8.05 -2.39 -0.02 -0.17 16 11 C -0.15 0.52 7.62 31.12 0.24 0.75 16 12 C 0.11 -0.26 4.28 45.52 0.19 -0.07 16 13 H 0.09 0.13 7.54 -2.38 -0.02 0.11 16 14 N -0.70 1.88 4.96 -444.26 -2.20 -0.32 16 15 C 0.55 1.40 7.74 86.37 0.67 2.07 16 16 O -0.58 -6.67 15.87 -4.35 -0.07 -6.74 16 17 C -0.21 0.50 9.41 23.62 0.22 0.72 16 18 C -0.02 0.00 9.46 23.84 0.23 0.23 16 19 C -0.08 0.10 5.87 -20.15 -0.12 -0.01 16 20 C -0.10 0.06 9.80 22.57 0.22 0.28 16 21 C -0.11 0.04 9.66 22.22 0.21 0.25 16 22 C -0.11 0.20 5.36 -19.79 -0.11 0.09 16 23 C -0.09 0.18 2.80 71.23 0.20 0.38 16 24 O -0.55 -0.88 12.83 -148.98 -1.91 -2.80 16 25 Si 0.77 -2.92 29.86 68.60 2.05 -0.87 16 26 C -0.12 0.51 8.65 22.23 0.19 0.70 16 27 C -0.09 0.41 9.41 22.57 0.21 0.62 16 28 C -0.14 0.74 7.57 31.12 0.24 0.98 16 29 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.06 0.42 5.88 -2.38 -0.01 0.40 16 32 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 33 H 0.10 -0.71 8.14 -2.39 -0.02 -0.73 16 34 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 35 H 0.06 0.37 5.88 -2.38 -0.01 0.35 16 36 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 37 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 38 H 0.41 -2.78 7.94 -92.71 -0.74 -3.51 16 39 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 40 H 0.12 -0.67 8.14 -2.39 -0.02 -0.69 16 41 H 0.41 -2.73 7.17 -92.70 -0.66 -3.39 16 42 H 0.16 -1.46 6.07 -2.91 -0.02 -1.48 16 43 H 0.12 0.29 7.52 -2.91 -0.02 0.26 16 44 H 0.14 -0.37 8.06 -2.91 -0.02 -0.39 16 45 H 0.13 -0.12 8.06 -2.91 -0.02 -0.14 16 46 H 0.12 -0.41 7.96 -2.39 -0.02 -0.43 16 47 H 0.39 -1.54 8.70 -74.06 -0.64 -2.18 16 48 H -0.31 -1.44 7.11 99.48 0.71 -0.73 16 49 H -0.28 0.23 7.01 99.48 0.70 0.93 16 50 H 0.15 -1.17 4.82 -2.91 -0.01 -1.19 16 51 H 0.16 -1.51 6.17 -2.91 -0.02 -1.53 16 52 H 0.13 -0.98 8.14 -2.39 -0.02 -1.00 16 53 H 0.08 -0.40 8.13 -2.39 -0.02 -0.42 16 Total: 0.00 -22.19 429.49 -0.31 -22.50 By element: Atomic # 1 Polarization: -16.21 SS G_CDS: -1.06 Total: -17.26 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 5.66 Total: 11.84 kcal Atomic # 7 Polarization: 3.91 SS G_CDS: -4.66 Total: -0.75 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -2.30 Total: -15.46 kcal Atomic # 14 Polarization: -2.92 SS G_CDS: 2.05 Total: -0.87 kcal Total: -22.19 -0.31 -22.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941094_12360594.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.351 kcal (2) G-P(sol) polarization free energy of solvation -22.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds