Wall clock time and date at job start Sun Mar 7 2021 00:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47556 * 2 1 4 4 C 1.53008 * 109.47066 * 239.99972 * 2 1 3 5 5 O 1.45194 * 109.47124 * 120.00424 * 2 1 3 6 6 C 1.34635 * 117.00470 * 59.99616 * 5 2 1 7 7 O 1.21509 * 119.99856 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00490 * 180.02562 * 6 5 2 9 9 C 1.46493 * 120.00145 * 179.97438 * 8 6 5 10 10 H 1.08996 * 112.85315 * 336.19735 * 9 8 6 11 11 C 1.53781 * 113.69264 * 107.46360 * 9 8 6 12 12 C 1.53776 * 87.08442 * 139.99108 * 11 9 8 13 13 H 1.09004 * 113.69027 * 89.12842 * 12 11 9 14 14 N 1.46504 * 113.61701 * 220.02335 * 12 11 9 15 15 C 1.34770 * 119.99716 * 252.49601 * 14 12 11 16 16 O 1.21569 * 120.00556 * 0.02562 * 15 14 12 17 17 C 1.47727 * 120.00284 * 179.97438 * 15 14 12 18 18 C 1.39624 * 120.12170 * 179.97438 * 17 15 14 19 19 C 1.37863 * 119.88068 * 179.72802 * 18 17 15 20 20 C 1.50693 * 119.94273 * 180.25673 * 19 18 17 21 21 O 1.42894 * 109.47171 * 254.99690 * 20 19 18 22 22 Si 1.86309 * 109.47147 * 134.99932 * 20 19 18 23 23 C 1.38633 * 120.11623 * 0.27337 * 19 18 17 24 24 F 1.35101 * 119.88256 * 179.97438 * 23 19 18 25 25 C 1.38681 * 120.24152 * 0.02562 * 23 19 18 26 26 C 1.37819 * 120.11431 * 359.97438 * 25 23 19 27 27 C 1.53779 * 87.08135 * 334.56818 * 12 11 9 28 28 H 1.09001 * 109.46981 * 300.00259 * 1 2 3 29 29 H 1.09006 * 109.46949 * 59.99537 * 1 2 3 30 30 H 1.08994 * 109.47469 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47196 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47203 * 299.99940 * 3 2 1 33 33 H 1.09001 * 109.47187 * 59.99867 * 3 2 1 34 34 H 1.09003 * 109.46922 * 300.00169 * 4 2 1 35 35 H 1.08998 * 109.47136 * 60.00401 * 4 2 1 36 36 H 1.09003 * 109.46989 * 180.02562 * 4 2 1 37 37 H 0.97000 * 119.99457 * 0.02562 * 8 6 5 38 38 H 1.09007 * 113.61087 * 25.44361 * 11 9 8 39 39 H 1.08994 * 113.61728 * 254.54750 * 11 9 8 40 40 H 0.96997 * 119.99805 * 72.49659 * 14 12 11 41 41 H 1.08002 * 120.06329 * 0.02562 * 18 17 15 42 42 H 1.09006 * 109.47073 * 15.00137 * 20 19 18 43 43 H 0.96701 * 114.00540 * 179.97438 * 21 20 19 44 44 H 1.48497 * 110.00024 * 60.00045 * 22 20 19 45 45 H 1.48497 * 109.99587 * 181.32077 * 22 20 19 46 46 H 1.07995 * 119.94170 * 179.97438 * 25 23 19 47 47 H 1.08002 * 120.05553 * 179.97438 * 26 25 23 48 48 H 1.09007 * 113.61618 * 139.97432 * 27 12 11 49 49 H 1.08994 * 113.61826 * 270.79639 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9508 -2.5094 0.5040 8 7 2.0672 -2.6655 2.4171 9 6 1.6730 -4.0666 2.5836 10 1 0.7587 -4.3160 2.0452 11 6 2.8194 -5.0635 2.3453 12 6 2.2699 -5.8604 3.5402 13 1 1.5187 -6.6006 3.2647 14 7 3.3136 -6.4060 4.4116 15 6 3.5702 -7.7291 4.4086 16 8 2.9360 -8.4697 3.6825 17 6 4.6229 -8.2794 5.2868 18 6 4.8904 -9.6498 5.2861 19 6 5.8778 -10.1572 6.1035 20 6 6.1716 -11.6352 6.0996 21 8 5.6388 -12.2299 7.2846 22 14 8.0148 -11.9019 6.0457 23 6 6.6006 -9.3102 6.9293 24 9 7.5668 -9.8127 7.7289 25 6 6.3349 -7.9492 6.9386 26 6 5.3499 -7.4314 6.1253 27 6 1.6735 -4.5369 4.0477 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7490 -1.2493 35 1 1.6767 -0.2074 -2.1393 36 1 3.1300 -0.7217 -1.2491 37 1 2.6262 -2.2364 3.0836 38 1 3.8089 -4.6410 2.5202 39 1 2.7465 -5.5940 1.3959 40 1 3.8199 -5.8151 4.9906 41 1 4.3282 -10.3104 4.6428 42 1 5.7123 -12.0947 5.2243 43 1 5.7909 -13.1827 7.3492 44 1 8.6528 -11.2801 7.2337 45 1 8.3167 -13.3554 6.0093 46 1 6.9006 -7.2938 7.5841 47 1 5.1435 -6.3714 6.1336 48 1 0.6753 -4.6423 4.4727 49 1 2.3491 -3.9711 4.6892 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941094_12496548.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:26:28 Heat of formation + Delta-G solvation = -126.755921 kcal Electronic energy + Delta-G solvation = -32497.278613 eV Core-core repulsion = 27728.043984 eV Total energy + Delta-G solvation = -4769.234629 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 367.167 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -50.39118 -41.95600 -41.46738 -40.30612 -39.26075 -37.93107 -37.76328 -35.61933 -34.97134 -33.70626 -32.78887 -31.76760 -28.36736 -28.29719 -27.06989 -26.77297 -26.35455 -24.62590 -23.37761 -22.90405 -21.63139 -21.30395 -20.77294 -19.24449 -18.95363 -18.77580 -18.60971 -18.15101 -17.74388 -17.19458 -17.16901 -16.91955 -16.42204 -16.20941 -16.01752 -15.77610 -15.48235 -15.36289 -15.33156 -15.01481 -14.79958 -14.67078 -14.38293 -14.05031 -13.96308 -13.88228 -13.51289 -13.43145 -13.36074 -13.13954 -12.92221 -12.88488 -12.86183 -12.58101 -12.47227 -12.37931 -12.29796 -12.17205 -11.97724 -11.42461 -11.39084 -11.12903 -11.10653 -10.78640 -10.28060 -10.13882 -10.06476 -9.78301 -4.98276 -0.49299 0.02246 1.14708 1.20370 1.53713 1.58067 1.74424 1.94717 2.05580 2.54264 3.03781 3.16544 3.19515 3.35607 3.50356 3.58505 3.60748 3.67830 3.74648 3.79341 3.83441 3.89547 3.94799 3.99525 4.12574 4.26870 4.44960 4.57822 4.61263 4.62955 4.65610 4.68408 4.75021 4.76779 4.77488 4.84622 4.88201 4.88519 4.92681 4.96170 5.00900 5.02830 5.09595 5.14293 5.27231 5.27726 5.36689 5.51867 5.60533 5.61616 6.40486 6.46446 6.47263 7.13035 7.35646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.128 3.872 3 C -0.137 4.137 4 C -0.180 4.180 5 O -0.368 6.368 6 C 0.642 3.358 7 O -0.596 6.596 8 N -0.684 5.684 9 C 0.139 3.861 10 H 0.104 0.896 11 C -0.161 4.161 12 C 0.125 3.875 13 H 0.103 0.897 14 N -0.695 5.695 15 C 0.563 3.437 16 O -0.576 6.576 17 C -0.155 4.155 18 C -0.020 4.020 19 C -0.127 4.127 20 C -0.085 4.085 21 O -0.555 6.555 22 Si 0.745 3.255 23 C 0.112 3.888 24 F -0.133 7.133 25 C -0.153 4.153 26 C -0.035 4.035 27 C -0.130 4.130 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.420 0.580 38 H 0.106 0.894 39 H 0.061 0.939 40 H 0.419 0.581 41 H 0.142 0.858 42 H 0.099 0.901 43 H 0.397 0.603 44 H -0.270 1.270 45 H -0.291 1.291 46 H 0.171 0.829 47 H 0.180 0.820 48 H 0.094 0.906 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.084 6.613 1.501 7.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 C -0.194 4.194 4 C -0.238 4.238 5 O -0.282 6.282 6 C 0.396 3.604 7 O -0.487 6.487 8 N -0.344 5.344 9 C 0.034 3.966 10 H 0.122 0.878 11 C -0.201 4.201 12 C 0.019 3.981 13 H 0.121 0.879 14 N -0.347 5.347 15 C 0.351 3.649 16 O -0.456 6.456 17 C -0.158 4.158 18 C -0.040 4.040 19 C -0.128 4.128 20 C -0.193 4.193 21 O -0.366 6.366 22 Si 0.648 3.352 23 C 0.093 3.907 24 F -0.111 7.111 25 C -0.171 4.171 26 C -0.053 4.053 27 C -0.169 4.169 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.258 0.742 38 H 0.125 0.875 39 H 0.080 0.920 40 H 0.258 0.742 41 H 0.160 0.840 42 H 0.117 0.883 43 H 0.247 0.753 44 H -0.196 1.196 45 H -0.218 1.218 46 H 0.189 0.811 47 H 0.197 0.803 48 H 0.113 0.887 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.821 6.188 1.068 6.884 hybrid contribution -0.153 -1.121 1.068 1.556 sum 2.668 5.066 2.136 6.111 Atomic orbital electron populations 1.22475 0.94104 1.03671 1.03508 1.22332 0.94404 0.92589 0.81527 1.21886 1.02484 0.90843 1.04234 1.22475 1.01652 1.02212 0.97416 1.86305 1.71490 1.23290 1.47148 1.18456 0.78577 0.80721 0.82679 1.90916 1.42338 1.71075 1.44353 1.44613 1.54882 1.11916 1.22974 1.22257 0.98565 0.77367 0.98395 0.87775 1.24019 1.00128 0.96907 0.99035 1.22176 0.90562 0.94524 0.90859 0.87894 1.45633 1.38341 1.07007 1.43754 1.18325 0.82329 0.82759 0.81440 1.90806 1.51891 1.59708 1.43201 1.19957 1.00054 0.94463 1.01359 1.21023 0.92782 0.94803 0.95342 1.19286 0.98962 0.94641 0.99891 1.24851 1.12090 0.91528 0.90813 1.86550 1.79622 1.28429 1.41975 0.94661 0.74219 0.79912 0.86386 1.18264 0.88091 0.93483 0.90886 1.91536 1.60383 1.87306 1.71903 1.21426 1.00675 0.92545 1.02444 1.21536 0.91476 1.01320 0.90997 1.23726 1.04047 0.93977 0.95125 0.91822 0.89624 0.91822 0.91113 0.88480 0.91075 0.91874 0.89610 0.91895 0.74200 0.87519 0.92023 0.74168 0.84019 0.88327 0.75268 1.19587 1.21843 0.81137 0.80265 0.88724 0.85654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.45 8.37 71.98 0.60 0.16 16 2 C 0.13 0.25 1.13 -10.79 -0.01 0.23 16 3 C -0.14 0.43 8.85 71.98 0.64 1.07 16 4 C -0.18 -0.48 8.37 71.98 0.60 0.12 16 5 O -0.37 -1.34 9.94 -55.44 -0.55 -1.89 16 6 C 0.64 3.06 8.06 129.79 1.05 4.11 16 7 O -0.60 -6.57 11.48 19.81 0.23 -6.34 16 8 N -0.68 2.07 5.36 -567.62 -3.04 -0.98 16 9 C 0.14 -0.55 4.24 45.52 0.19 -0.35 16 10 H 0.10 0.08 7.46 -2.39 -0.02 0.06 16 11 C -0.16 0.64 7.68 31.12 0.24 0.88 16 12 C 0.12 -0.60 4.24 45.51 0.19 -0.41 16 13 H 0.10 0.03 7.46 -2.38 -0.02 0.01 16 14 N -0.70 4.39 5.31 -443.02 -2.35 2.04 16 15 C 0.56 0.82 7.77 86.75 0.67 1.49 16 16 O -0.58 -6.19 15.94 -3.93 -0.06 -6.25 16 17 C -0.16 0.16 5.87 -20.09 -0.12 0.05 16 18 C -0.02 -0.04 9.21 22.52 0.21 0.17 16 19 C -0.13 -0.31 4.80 -19.86 -0.10 -0.41 16 20 C -0.08 -0.11 2.79 71.23 0.20 0.09 16 21 O -0.56 -2.33 12.85 -148.98 -1.92 -4.24 16 22 Si 0.74 0.46 30.77 68.60 2.11 2.58 16 23 C 0.11 0.24 6.67 22.47 0.15 0.39 16 24 F -0.13 -0.85 12.84 44.97 0.58 -0.27 16 25 C -0.15 0.68 10.01 22.28 0.22 0.90 16 26 C -0.03 0.26 9.54 22.52 0.21 0.47 16 27 C -0.13 1.28 7.58 31.12 0.24 1.52 16 28 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.08 -0.06 8.14 -2.38 -0.02 -0.08 16 30 H 0.06 0.50 5.88 -2.39 -0.01 0.49 16 31 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 32 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 33 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 34 H 0.06 0.52 5.88 -2.39 -0.01 0.50 16 35 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 36 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.42 -3.70 8.84 -92.71 -0.82 -4.52 16 38 H 0.11 -0.73 8.14 -2.38 -0.02 -0.75 16 39 H 0.06 0.05 8.14 -2.39 -0.02 0.04 16 40 H 0.42 -5.85 6.76 -92.71 -0.63 -6.48 16 41 H 0.14 0.41 7.58 -2.91 -0.02 0.39 16 42 H 0.10 -0.25 7.77 -2.38 -0.02 -0.27 16 43 H 0.40 -1.49 8.74 -74.06 -0.65 -2.13 16 44 H -0.27 -1.99 5.33 99.48 0.53 -1.45 16 45 H -0.29 -1.38 7.11 99.48 0.71 -0.67 16 46 H 0.17 -1.61 8.06 -2.91 -0.02 -1.64 16 47 H 0.18 -2.94 6.40 -2.91 -0.02 -2.96 16 48 H 0.09 -0.92 8.14 -2.38 -0.02 -0.93 16 49 H 0.13 -1.95 8.10 -2.39 -0.02 -1.97 16 Total: 0.00 -27.25 402.47 -1.03 -28.28 By element: Atomic # 1 Polarization: -22.17 SS G_CDS: -1.22 Total: -23.39 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 5.19 Total: 10.47 kcal Atomic # 7 Polarization: 6.46 SS G_CDS: -5.39 Total: 1.07 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -2.30 Total: -18.73 kcal Atomic # 9 Polarization: -0.85 SS G_CDS: 0.58 Total: -0.27 kcal Atomic # 14 Polarization: 0.46 SS G_CDS: 2.11 Total: 2.58 kcal Total: -27.25 -1.03 -28.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941094_12496548.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.473 kcal (2) G-P(sol) polarization free energy of solvation -27.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds