Wall clock time and date at job start Sun Mar 7 2021 00:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39284 * 121.03133 * 2 1 4 4 C 1.46495 * 134.19698 * 359.96192 * 3 2 1 5 5 C 1.50700 * 126.60423 * 0.02562 * 4 3 2 6 6 O 1.42903 * 109.46563 * 285.00304 * 5 4 3 7 7 Si 1.86300 * 109.47524 * 164.99884 * 5 4 3 8 8 C 1.34186 * 106.79921 * 180.02562 * 4 3 2 9 9 N 1.36942 * 109.95017 * 359.97438 * 8 4 3 10 10 C 1.37155 * 110.11880 * 0.02562 * 9 8 4 11 11 N 1.32815 * 132.96711 * 179.97438 * 10 9 8 12 12 C 1.31308 * 121.88988 * 179.97438 * 11 10 9 13 13 C 1.39751 * 121.03306 * 179.97438 * 2 1 3 14 14 C 1.47662 * 120.45453 * 0.02562 * 13 2 1 15 15 O 1.21580 * 120.00058 * 353.99450 * 14 13 2 16 16 N 1.34777 * 120.00193 * 174.00010 * 14 13 2 17 17 C 1.46508 * 119.99839 * 179.97438 * 16 14 13 18 18 H 1.08998 * 112.84795 * 23.80426 * 17 16 14 19 19 C 1.53785 * 113.61213 * 155.00079 * 17 16 14 20 20 C 1.53777 * 87.07806 * 139.97820 * 19 17 16 21 21 H 1.08999 * 113.61145 * 89.12015 * 20 19 17 22 22 N 1.46503 * 113.61256 * 219.92976 * 20 19 17 23 23 C 1.34777 * 120.00009 * 205.00354 * 22 20 19 24 24 O 1.21509 * 120.00136 * 0.02562 * 23 22 20 25 25 O 1.34634 * 119.99727 * 180.02562 * 23 22 20 26 26 C 1.45201 * 116.99897 * 180.02562 * 25 23 22 27 27 C 1.53002 * 109.47054 * 59.99857 * 26 25 23 28 28 C 1.53001 * 109.47258 * 179.97438 * 26 25 23 29 29 C 1.52997 * 109.47149 * 299.99905 * 26 25 23 30 30 C 1.53782 * 87.08543 * 334.56613 * 20 19 17 31 31 H 1.09000 * 109.47054 * 263.72041 * 1 2 3 32 32 H 1.08989 * 109.47490 * 23.72045 * 1 2 3 33 33 H 1.09005 * 109.47004 * 143.72690 * 1 2 3 34 34 H 1.09005 * 109.46990 * 44.99557 * 5 4 3 35 35 H 0.96696 * 113.99795 * 299.98813 * 6 5 4 36 36 H 1.48506 * 109.99726 * 58.68087 * 7 5 4 37 37 H 1.48493 * 109.99696 * 179.97438 * 7 5 4 38 38 H 1.07999 * 125.02142 * 179.97438 * 8 4 3 39 39 H 0.97002 * 124.94167 * 180.02562 * 9 8 4 40 40 H 1.08003 * 119.30773 * 179.97438 * 12 11 10 41 41 H 0.96994 * 119.99680 * 359.97438 * 16 14 13 42 42 H 1.09003 * 113.60899 * 254.52872 * 19 17 16 43 43 H 1.08998 * 113.61464 * 25.42903 * 19 17 16 44 44 H 0.97003 * 120.00105 * 25.00531 * 22 20 19 45 45 H 1.08994 * 109.47173 * 60.00198 * 27 26 25 46 46 H 1.09000 * 109.46665 * 180.02562 * 27 26 25 47 47 H 1.09000 * 109.47104 * 299.99708 * 27 26 25 48 48 H 1.09009 * 109.46986 * 59.99902 * 28 26 25 49 49 H 1.09000 * 109.47289 * 179.97438 * 28 26 25 50 50 H 1.08994 * 109.47346 * 300.00034 * 28 26 25 51 51 H 1.09001 * 109.47444 * 59.99505 * 29 26 25 52 52 H 1.09000 * 109.47508 * 180.02562 * 29 26 25 53 53 H 1.09009 * 109.46901 * 299.99979 * 29 26 25 54 54 H 1.08995 * 113.61176 * 270.88669 * 30 20 19 55 55 H 1.08995 * 113.61388 * 139.98449 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1935 0.0000 4 6 1.8515 2.6100 -0.0007 5 6 0.4526 3.1705 -0.0011 6 8 -0.1190 3.0232 -1.3026 7 14 0.5069 4.9766 0.4527 8 6 2.9947 3.3126 -0.0009 9 7 4.0668 2.4605 0.0002 10 6 3.6348 1.1588 0.0006 11 7 4.2720 -0.0065 0.0012 12 6 3.6267 -1.1501 0.0019 13 6 2.2275 -1.1975 0.0005 14 6 1.5226 -2.4950 0.0005 15 8 0.3122 -2.5293 0.1102 16 7 2.2209 -3.6413 -0.1209 17 6 1.5216 -4.9287 -0.1204 18 1 0.4792 -4.8442 -0.4275 19 6 2.2888 -6.0469 -0.8456 20 6 1.8274 -6.9863 0.2810 21 1 0.8683 -7.4654 0.0846 22 7 2.8580 -7.9331 0.7146 23 6 2.5028 -9.1003 1.2871 24 8 1.3278 -9.3677 1.4434 25 8 3.4499 -9.9701 1.6860 26 6 2.9944 -11.2075 2.2941 27 6 2.1243 -11.9757 1.2972 28 6 4.2038 -12.0620 2.6790 29 6 2.1752 -10.8890 3.5464 30 6 1.7213 -5.7376 1.1722 31 1 -0.3633 -0.1124 1.0215 32 1 -0.3634 0.9407 -0.4134 33 1 -0.3633 -0.8286 -0.6080 34 1 -0.1551 2.6313 0.7257 35 1 0.3709 3.4784 -2.0011 36 1 1.3583 5.7174 -0.5126 37 1 -0.8666 5.5410 0.4551 38 1 3.0597 4.3906 -0.0017 39 1 4.9965 2.7373 0.0007 40 1 4.1870 -2.0734 0.0019 41 1 3.1865 -3.6139 -0.2087 42 1 1.8741 -6.2988 -1.8216 43 1 3.3674 -5.8913 -0.8702 44 1 3.7960 -7.7199 0.5896 45 1 2.7079 -12.2026 0.4051 46 1 1.7821 -12.9043 1.7540 47 1 1.2627 -11.3671 1.0227 48 1 4.8241 -11.5149 3.3891 49 1 3.8620 -12.9907 3.1359 50 1 4.7871 -12.2890 1.7866 51 1 1.3136 -10.2803 3.2720 52 1 1.8337 -11.8178 4.0033 53 1 2.7952 -10.3417 4.2567 54 1 2.6447 -5.4975 1.6992 55 1 0.8486 -5.7400 1.8251 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941094_12890568.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:26:46 Heat of formation + Delta-G solvation = -46.742465 kcal Electronic energy + Delta-G solvation = -37805.225617 eV Core-core repulsion = 32810.535267 eV Total energy + Delta-G solvation = -4994.690350 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 403.199 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.85402 -41.93889 -41.22085 -39.93184 -38.70006 -37.96673 -37.80130 -35.68937 -35.14922 -34.79439 -33.53854 -31.92851 -30.92684 -28.91903 -28.37768 -28.30671 -26.78055 -26.66854 -25.94070 -24.60960 -23.98899 -22.96932 -21.83187 -21.46496 -20.83634 -20.62953 -19.35355 -19.22972 -18.66977 -18.05184 -17.72439 -17.47472 -17.19344 -17.17891 -16.78337 -16.48920 -16.26302 -15.98093 -15.96815 -15.51880 -15.49395 -15.38218 -15.32301 -14.87756 -14.68649 -14.42447 -14.19419 -14.04350 -13.82266 -13.72801 -13.58746 -13.49560 -13.37009 -13.23044 -13.19112 -13.11767 -12.92917 -12.87212 -12.57663 -12.48602 -12.45419 -12.31162 -12.17119 -11.97497 -11.80753 -11.40159 -11.20849 -11.15097 -11.11701 -10.60475 -10.28471 -10.23984 -10.05481 -9.61170 -9.12933 -4.83918 -0.34470 -0.07059 1.13923 1.35513 1.42393 1.62574 1.68832 1.72328 1.79572 2.05136 2.09404 2.76140 3.15852 3.29590 3.38639 3.44848 3.50531 3.54295 3.64577 3.71061 3.73604 3.76202 3.78577 3.83327 3.89167 3.93805 4.14328 4.26841 4.30330 4.44397 4.51204 4.57962 4.60287 4.60797 4.62918 4.67607 4.69662 4.74405 4.75697 4.78662 4.83802 4.87127 4.87502 4.96363 5.00981 5.01591 5.12151 5.19418 5.26151 5.26323 5.29334 5.36055 5.42478 5.54778 5.59370 5.74020 6.22387 6.39574 6.48988 6.59604 6.83639 7.17677 7.34319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.062 3.938 3 C -0.166 4.166 4 C -0.197 4.197 5 C -0.059 4.059 6 O -0.550 6.550 7 Si 0.779 3.221 8 C 0.090 3.910 9 N -0.560 5.560 10 C 0.289 3.711 11 N -0.516 5.516 12 C 0.182 3.818 13 C -0.241 4.241 14 C 0.571 3.429 15 O -0.566 6.566 16 N -0.699 5.699 17 C 0.127 3.873 18 H 0.104 0.896 19 C -0.131 4.131 20 C 0.140 3.860 21 H 0.105 0.895 22 N -0.685 5.685 23 C 0.642 3.358 24 O -0.596 6.596 25 O -0.368 6.368 26 C 0.128 3.872 27 C -0.180 4.180 28 C -0.138 4.138 29 C -0.181 4.181 30 C -0.161 4.161 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.109 0.891 35 H 0.385 0.615 36 H -0.258 1.258 37 H -0.309 1.309 38 H 0.220 0.780 39 H 0.438 0.562 40 H 0.197 0.803 41 H 0.416 0.584 42 H 0.095 0.905 43 H 0.123 0.877 44 H 0.420 0.580 45 H 0.063 0.937 46 H 0.085 0.915 47 H 0.063 0.937 48 H 0.069 0.931 49 H 0.097 0.903 50 H 0.070 0.930 51 H 0.062 0.938 52 H 0.086 0.914 53 H 0.062 0.938 54 H 0.104 0.896 55 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.982 3.044 0.416 9.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.054 3.946 3 C -0.173 4.173 4 C -0.204 4.204 5 C -0.167 4.167 6 O -0.358 6.358 7 Si 0.682 3.318 8 C -0.037 4.037 9 N -0.166 5.166 10 C 0.055 3.945 11 N -0.229 5.229 12 C 0.013 3.987 13 C -0.249 4.249 14 C 0.359 3.641 15 O -0.446 6.446 16 N -0.351 5.351 17 C 0.021 3.979 18 H 0.122 0.878 19 C -0.169 4.169 20 C 0.035 3.965 21 H 0.123 0.877 22 N -0.344 5.344 23 C 0.396 3.604 24 O -0.486 6.486 25 O -0.283 6.283 26 C 0.091 3.909 27 C -0.238 4.238 28 C -0.195 4.195 29 C -0.238 4.238 30 C -0.202 4.202 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.127 0.873 35 H 0.234 0.766 36 H -0.183 1.183 37 H -0.237 1.237 38 H 0.236 0.764 39 H 0.280 0.720 40 H 0.214 0.786 41 H 0.254 0.746 42 H 0.113 0.887 43 H 0.142 0.858 44 H 0.258 0.742 45 H 0.082 0.918 46 H 0.104 0.896 47 H 0.082 0.918 48 H 0.089 0.911 49 H 0.116 0.884 50 H 0.089 0.911 51 H 0.081 0.919 52 H 0.104 0.896 53 H 0.081 0.919 54 H 0.122 0.878 55 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.039 3.411 0.670 8.759 hybrid contribution -0.109 -0.313 -1.126 1.174 sum 7.931 3.098 -0.456 8.526 Atomic orbital electron populations 1.21092 0.89582 1.03992 1.03145 1.20065 0.96976 0.90274 0.87323 1.19741 0.93277 0.94348 1.09928 1.20708 0.96076 0.90320 1.13324 1.24737 0.90637 1.13780 0.87543 1.86586 1.55188 1.76615 1.17441 0.94090 0.79244 0.70151 0.88349 1.22322 0.84008 0.97203 1.00121 1.41601 1.10590 1.01747 1.62694 1.18773 0.89484 0.86867 0.99378 1.66518 1.40828 0.96461 1.19090 1.22993 0.89583 0.95364 0.90757 1.20513 0.95516 0.93301 1.15529 1.18038 0.86460 0.84100 0.75454 1.90755 1.15235 1.87532 1.51083 1.45631 1.11179 1.04401 1.73876 1.22158 0.98075 0.80884 0.96766 0.87779 1.23727 1.03069 0.91849 0.98279 1.22254 0.91982 0.86450 0.95773 0.87663 1.44627 1.11590 1.15570 1.62638 1.18445 0.83285 0.81465 0.77212 1.90914 1.18876 1.77868 1.60990 1.86308 1.38247 1.30233 1.73477 1.22335 0.96257 0.79913 0.92345 1.22476 1.00596 1.01317 0.99369 1.21890 0.95663 0.99100 1.02802 1.22476 1.00896 1.03760 0.96642 1.24017 1.03509 0.94852 0.97773 0.90544 0.90024 0.90181 0.87330 0.76555 1.18320 1.23683 0.76356 0.72038 0.78650 0.74571 0.88671 0.85838 0.74247 0.91805 0.89570 0.91845 0.91149 0.88421 0.91060 0.91890 0.89550 0.91944 0.87759 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 8.46 71.24 0.60 -0.44 16 2 C 0.06 0.46 5.98 -19.25 -0.12 0.34 16 3 C -0.17 -0.84 6.16 -20.19 -0.12 -0.97 16 4 C -0.20 0.07 5.57 -18.64 -0.10 -0.04 16 5 C -0.06 0.05 1.88 71.24 0.13 0.18 16 6 O -0.55 -1.38 11.67 -148.98 -1.74 -3.12 16 7 Si 0.78 -4.07 30.83 68.60 2.11 -1.96 16 8 C 0.09 -0.54 10.44 82.97 0.87 0.32 16 9 N -0.56 2.13 6.04 -192.26 -1.16 0.97 16 10 C 0.29 0.98 8.42 134.02 1.13 2.11 16 11 N -0.52 -1.89 10.37 -191.75 -1.99 -3.88 16 12 C 0.18 0.07 10.67 85.20 0.91 0.98 16 13 C -0.24 -1.10 5.89 -20.00 -0.12 -1.22 16 14 C 0.57 2.89 7.72 86.73 0.67 3.56 16 15 O -0.57 -7.15 13.09 -3.97 -0.05 -7.20 16 16 N -0.70 2.10 5.31 -443.05 -2.35 -0.25 16 17 C 0.13 -0.32 4.24 45.52 0.19 -0.13 16 18 H 0.10 0.22 7.46 -2.39 -0.02 0.21 16 19 C -0.13 1.01 7.58 31.12 0.24 1.25 16 20 C 0.14 -0.30 4.24 45.52 0.19 -0.11 16 21 H 0.11 0.24 7.46 -2.39 -0.02 0.22 16 22 N -0.68 0.94 5.36 -567.61 -3.04 -2.10 16 23 C 0.64 3.92 8.06 129.79 1.05 4.96 16 24 O -0.60 -7.27 11.48 19.81 0.23 -7.05 16 25 O -0.37 -1.78 9.94 -55.43 -0.55 -2.33 16 26 C 0.13 0.37 1.13 -10.79 -0.01 0.36 16 27 C -0.18 -0.60 8.37 71.98 0.60 0.00 16 28 C -0.14 0.31 8.85 71.98 0.64 0.95 16 29 C -0.18 -0.66 8.37 71.98 0.60 -0.05 16 30 C -0.16 0.29 7.68 31.12 0.24 0.53 16 31 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.08 0.66 4.79 -2.39 -0.01 0.65 16 33 H 0.08 0.96 5.95 -2.38 -0.01 0.95 16 34 H 0.11 0.05 7.13 -2.38 -0.02 0.03 16 35 H 0.39 -1.50 8.70 -74.06 -0.64 -2.14 16 36 H -0.26 1.31 7.00 99.48 0.70 2.01 16 37 H -0.31 -1.26 7.11 99.48 0.71 -0.55 16 38 H 0.22 -3.03 6.28 -2.91 -0.02 -3.05 16 39 H 0.44 -4.07 8.96 -92.71 -0.83 -4.90 16 40 H 0.20 -1.66 6.43 -2.91 -0.02 -1.68 16 41 H 0.42 -4.10 6.80 -92.71 -0.63 -4.74 16 42 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 43 H 0.12 -1.61 8.10 -2.39 -0.02 -1.63 16 44 H 0.42 -2.94 8.84 -92.71 -0.82 -3.75 16 45 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 46 H 0.09 0.00 8.14 -2.39 -0.02 -0.01 16 47 H 0.06 0.56 5.88 -2.39 -0.01 0.54 16 48 H 0.07 -0.18 8.14 -2.38 -0.02 -0.20 16 49 H 0.10 -0.52 8.14 -2.39 -0.02 -0.54 16 50 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 51 H 0.06 0.58 5.88 -2.39 -0.01 0.57 16 52 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 53 H 0.06 0.18 8.14 -2.38 -0.02 0.16 16 54 H 0.10 -0.44 8.14 -2.39 -0.02 -0.46 16 55 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 Total: 0.00 -29.83 436.12 -2.86 -32.69 By element: Atomic # 1 Polarization: -16.48 SS G_CDS: -1.90 Total: -18.38 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: 7.59 Total: 12.60 kcal Atomic # 7 Polarization: 3.28 SS G_CDS: -8.54 Total: -5.26 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -2.11 Total: -19.70 kcal Atomic # 14 Polarization: -4.07 SS G_CDS: 2.11 Total: -1.96 kcal Total: -29.83 -2.86 -32.69 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941094_12890568.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.057 kcal (2) G-P(sol) polarization free energy of solvation -29.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds