Wall clock time and date at job start Sun Mar 7 2021 00:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47143 * 2 1 4 4 C 1.52997 * 109.47108 * 239.99641 * 2 1 3 5 5 O 1.45199 * 109.47050 * 119.99780 * 2 1 3 6 6 C 1.34637 * 117.00336 * 60.00218 * 5 2 1 7 7 O 1.21510 * 119.99608 * 359.97438 * 6 5 2 8 8 N 1.34776 * 120.00367 * 179.97438 * 6 5 2 9 9 C 1.46499 * 120.00164 * 179.97438 * 8 6 5 10 10 H 1.08998 * 112.84539 * 23.80394 * 9 8 6 11 11 C 1.53776 * 113.61536 * 155.00238 * 9 8 6 12 12 C 1.53781 * 87.08173 * 89.11436 * 11 9 8 13 13 H 1.09011 * 113.61005 * 140.06748 * 12 11 9 14 14 N 1.46494 * 113.61748 * 270.88084 * 12 11 9 15 15 C 1.34773 * 120.00310 * 203.47066 * 14 12 11 16 16 O 1.21578 * 119.99890 * 0.02562 * 15 14 12 17 17 C 1.47655 * 120.00136 * 180.02562 * 15 14 12 18 18 C 1.40170 * 119.97352 * 359.97355 * 17 15 14 19 19 C 1.36352 * 120.66540 * 180.02562 * 18 17 15 20 20 C 1.39323 * 120.23853 * 0.02562 * 19 18 17 21 21 N 1.37399 * 133.24953 * 180.02562 * 20 19 18 22 22 C 1.36863 * 109.98445 * 179.97438 * 21 20 19 23 23 C 1.34195 * 109.96456 * 0.02562 * 22 21 20 24 24 C 1.50702 * 126.54081 * 180.02562 * 23 22 21 25 25 O 1.42895 * 109.46815 * 104.96219 * 24 23 22 26 26 Si 1.86304 * 109.47212 * 344.96465 * 24 23 22 27 27 C 1.40907 * 119.64271 * 359.95319 * 20 19 18 28 28 C 1.39195 * 119.97160 * 180.02562 * 17 15 14 29 29 C 1.53778 * 87.17159 * 25.47857 * 12 11 9 30 30 H 1.08996 * 109.46858 * 300.00006 * 1 2 3 31 31 H 1.08996 * 109.46664 * 60.00483 * 1 2 3 32 32 H 1.09002 * 109.46438 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47808 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46885 * 299.99720 * 3 2 1 35 35 H 1.08999 * 109.47277 * 59.99694 * 3 2 1 36 36 H 1.08999 * 109.47047 * 299.99894 * 4 2 1 37 37 H 1.09004 * 109.47183 * 60.00119 * 4 2 1 38 38 H 1.09005 * 109.46799 * 179.97438 * 4 2 1 39 39 H 0.97001 * 119.99689 * 0.02562 * 8 6 5 40 40 H 1.09011 * 113.61281 * 334.56699 * 11 9 8 41 41 H 1.08998 * 113.61462 * 203.66985 * 11 9 8 42 42 H 0.97001 * 119.99977 * 23.47826 * 14 12 11 43 43 H 1.07994 * 119.66437 * 0.05300 * 18 17 15 44 44 H 1.08004 * 119.87875 * 180.02562 * 19 18 17 45 45 H 0.97006 * 125.01190 * 359.95271 * 21 20 19 46 46 H 1.08003 * 125.02246 * 179.97438 * 22 21 20 47 47 H 1.08991 * 109.47144 * 224.96458 * 24 23 22 48 48 H 0.96700 * 114.00283 * 299.99957 * 25 24 23 49 49 H 1.48492 * 110.00177 * 179.97438 * 26 24 23 50 50 H 1.48496 * 109.99782 * 301.31903 * 26 24 23 51 51 H 1.07997 * 120.30429 * 359.69532 * 28 17 15 52 52 H 1.08997 * 113.61787 * 89.06920 * 29 12 11 53 53 H 1.09004 * 113.61388 * 219.97375 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3384 7 8 0.9510 -2.5094 0.5041 8 7 2.0681 -2.6656 2.4168 9 6 1.6741 -4.0668 2.5833 10 1 1.4210 -4.5502 1.6398 11 6 2.6475 -4.8814 3.4514 12 6 1.8076 -4.4456 4.6636 13 1 1.6625 -5.2353 5.4009 14 7 2.2508 -3.1838 5.2615 15 6 1.9607 -2.9094 6.5487 16 8 1.3317 -3.7093 7.2139 17 6 2.4069 -1.6373 7.1511 18 6 3.1327 -0.7157 6.3838 19 6 3.5521 0.4630 6.9260 20 6 3.2634 0.7662 8.2548 21 7 3.5452 1.8457 9.0567 22 6 3.0266 1.6472 10.3077 23 6 2.4044 0.4594 10.3625 24 6 1.7038 -0.1321 11.5584 25 8 0.2896 -0.0358 11.3777 26 14 2.1987 0.8015 13.0928 27 6 2.5342 -0.1517 9.0365 28 6 2.1075 -1.3548 8.4808 29 6 0.6267 -4.2857 3.6917 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9562 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6767 -1.7490 -1.2491 37 1 1.6767 -0.2075 -2.1392 38 1 3.1301 -0.7209 -1.2494 39 1 2.6277 -2.2367 3.0830 40 1 3.6629 -4.4849 3.4583 41 1 2.6121 -5.9536 3.2583 42 1 2.7529 -2.5456 4.7308 43 1 3.3615 -0.9413 5.3528 44 1 4.1101 1.1642 6.3230 45 1 4.0392 2.6326 8.7776 46 1 3.1070 2.3432 11.1296 47 1 1.9862 -1.1795 11.6636 48 1 -0.0333 0.8701 11.2771 49 1 1.5141 0.2283 14.2792 50 1 3.6711 0.7358 13.2744 51 1 1.5451 -2.0602 9.0744 52 1 0.0398 -5.1953 3.5642 53 1 0.0116 -3.4085 3.8926 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941094_13287722.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:27:07 Heat of formation + Delta-G solvation = -53.095856 kcal Electronic energy + Delta-G solvation = -36582.515263 eV Core-core repulsion = 31808.512939 eV Total energy + Delta-G solvation = -4774.002324 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.188 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.50076 -42.12359 -41.29497 -39.84434 -38.02996 -37.86281 -37.41596 -35.44144 -34.75838 -33.66398 -33.26750 -30.86151 -30.44024 -28.38005 -28.30479 -26.83501 -26.50141 -26.36064 -24.79326 -23.53443 -23.24494 -21.85346 -21.31937 -20.79596 -20.66713 -19.41467 -19.23425 -18.48192 -17.65484 -17.50546 -17.42411 -17.22662 -16.96671 -16.52394 -16.33328 -16.13309 -15.90437 -15.61197 -15.52790 -15.38256 -15.29253 -15.12784 -14.88140 -14.77851 -14.47008 -14.08467 -13.92835 -13.80946 -13.64225 -13.61615 -13.36319 -13.12903 -13.03098 -12.92265 -12.87521 -12.64997 -12.54019 -12.37330 -12.32155 -12.21298 -11.94578 -11.93523 -11.58864 -11.41230 -11.17668 -11.14573 -10.82103 -10.33517 -10.32782 -10.21570 -9.35421 -8.82118 -5.01106 -0.19405 0.17384 1.02504 1.35319 1.52165 1.67390 1.70549 1.77521 1.94766 2.03538 2.12012 2.83976 3.02377 3.32306 3.45807 3.59116 3.62318 3.67053 3.73036 3.78025 3.82665 3.83604 3.91376 3.93411 4.01500 4.11285 4.35179 4.43692 4.44809 4.48663 4.54705 4.58056 4.60441 4.62582 4.71593 4.72221 4.75908 4.78949 4.80656 4.86126 4.87603 4.91801 4.94440 4.97430 5.09832 5.22079 5.23553 5.26357 5.29813 5.32538 5.44963 5.50852 5.55628 5.56522 5.96408 6.25693 6.34087 6.59754 6.87069 7.06921 7.25719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.129 3.871 3 C -0.137 4.137 4 C -0.181 4.181 5 O -0.366 6.366 6 C 0.648 3.352 7 O -0.588 6.588 8 N -0.684 5.684 9 C 0.132 3.868 10 H 0.107 0.893 11 C -0.129 4.129 12 C 0.109 3.891 13 H 0.095 0.905 14 N -0.697 5.697 15 C 0.564 3.436 16 O -0.582 6.582 17 C -0.181 4.181 18 C -0.070 4.070 19 C -0.122 4.122 20 C 0.112 3.888 21 N -0.570 5.570 22 C 0.088 3.912 23 C -0.227 4.227 24 C -0.054 4.054 25 O -0.565 6.565 26 Si 0.812 3.188 27 C -0.129 4.129 28 C -0.022 4.022 29 C -0.164 4.164 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.406 0.594 40 H 0.097 0.903 41 H 0.137 0.863 42 H 0.404 0.596 43 H 0.154 0.846 44 H 0.163 0.837 45 H 0.440 0.560 46 H 0.221 0.779 47 H 0.083 0.917 48 H 0.393 0.607 49 H -0.308 1.308 50 H -0.279 1.279 51 H 0.105 0.895 52 H 0.117 0.883 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.487 10.106 -1.790 12.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.093 3.907 3 C -0.194 4.194 4 C -0.238 4.238 5 O -0.280 6.280 6 C 0.401 3.599 7 O -0.479 6.479 8 N -0.345 5.345 9 C 0.028 3.972 10 H 0.125 0.875 11 C -0.167 4.167 12 C 0.004 3.996 13 H 0.113 0.887 14 N -0.350 5.350 15 C 0.354 3.646 16 O -0.462 6.462 17 C -0.185 4.185 18 C -0.090 4.090 19 C -0.142 4.142 20 C 0.002 3.998 21 N -0.174 5.174 22 C -0.039 4.039 23 C -0.234 4.234 24 C -0.162 4.162 25 O -0.373 6.373 26 Si 0.716 3.284 27 C -0.134 4.134 28 C -0.042 4.042 29 C -0.204 4.204 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.244 0.756 40 H 0.115 0.885 41 H 0.155 0.845 42 H 0.243 0.757 43 H 0.172 0.828 44 H 0.181 0.819 45 H 0.281 0.719 46 H 0.237 0.763 47 H 0.101 0.899 48 H 0.243 0.757 49 H -0.237 1.237 50 H -0.205 1.205 51 H 0.124 0.876 52 H 0.135 0.865 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.198 8.812 -1.016 10.821 hybrid contribution 0.153 -0.391 -0.321 0.529 sum 6.351 8.420 -1.337 10.631 Atomic orbital electron populations 1.22489 0.94344 1.03623 1.03460 1.22356 0.94226 0.92684 0.81472 1.21891 1.02641 0.90652 1.04248 1.22481 1.01804 1.02221 0.97276 1.86297 1.71456 1.22922 1.47335 1.18279 0.78489 0.80895 0.82191 1.90921 1.41794 1.70902 1.44246 1.44460 1.54952 1.12107 1.22989 1.22051 0.96307 0.79140 0.99703 0.87514 1.23717 0.98819 1.02888 0.91287 1.22069 0.95911 0.86420 0.95213 0.88657 1.45549 1.57350 1.20969 1.11137 1.18488 0.78144 0.86180 0.81762 1.90772 1.42166 1.50573 1.62731 1.19550 1.07573 0.96175 0.95214 1.20802 0.95787 0.92479 0.99909 1.20056 1.03825 0.98687 0.91652 1.18606 0.98972 0.88838 0.93380 1.41783 1.48461 1.17950 1.09208 1.22252 0.96022 0.97194 0.88470 1.20856 1.09903 0.97750 0.94862 1.24759 0.83200 1.04250 1.04026 1.86488 1.20211 1.34664 1.95941 0.94040 0.76689 0.86350 0.71313 1.19227 1.03583 0.95288 0.95259 1.20584 0.95075 0.94838 0.93679 1.24038 0.97271 1.03533 0.95571 0.92088 0.89470 0.91917 0.90821 0.88456 0.91105 0.91808 0.89559 0.91634 0.75592 0.88456 0.84490 0.75666 0.82822 0.81921 0.71869 0.76257 0.89891 0.75699 1.23683 1.20520 0.87645 0.86505 0.92411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.49 8.37 71.98 0.60 0.11 16 2 C 0.13 0.18 1.13 -10.79 -0.01 0.17 16 3 C -0.14 0.55 8.85 71.98 0.64 1.19 16 4 C -0.18 -0.31 8.37 71.98 0.60 0.29 16 5 O -0.37 -1.20 9.94 -55.46 -0.55 -1.75 16 6 C 0.65 3.40 8.06 129.79 1.05 4.45 16 7 O -0.59 -6.44 11.48 19.81 0.23 -6.22 16 8 N -0.68 0.54 5.14 -567.18 -2.92 -2.37 16 9 C 0.13 -0.21 4.33 45.61 0.20 -0.01 16 10 H 0.11 0.07 7.46 -2.39 -0.02 0.05 16 11 C -0.13 0.77 7.58 31.12 0.24 1.01 16 12 C 0.11 0.01 4.29 45.52 0.20 0.21 16 13 H 0.10 0.37 7.50 -2.38 -0.02 0.36 16 14 N -0.70 -0.59 5.07 -443.09 -2.25 -2.84 16 15 C 0.56 5.15 7.76 86.73 0.67 5.82 16 16 O -0.58 -10.67 15.95 -3.96 -0.06 -10.73 16 17 C -0.18 -1.18 5.87 -20.09 -0.12 -1.30 16 18 C -0.07 0.10 9.46 22.30 0.21 0.31 16 19 C -0.12 0.41 10.00 22.09 0.22 0.64 16 20 C 0.11 -0.03 7.27 39.19 0.28 0.25 16 21 N -0.57 3.99 6.05 -187.48 -1.13 2.85 16 22 C 0.09 -0.57 10.43 82.98 0.87 0.29 16 23 C -0.23 -0.32 5.58 -18.61 -0.10 -0.42 16 24 C -0.05 -0.13 3.06 71.24 0.22 0.08 16 25 O -0.57 -2.56 12.88 -148.98 -1.92 -4.48 16 26 Si 0.81 -2.76 30.76 68.60 2.11 -0.65 16 27 C -0.13 -0.77 6.34 -20.21 -0.13 -0.90 16 28 C -0.02 -0.23 9.64 22.74 0.22 -0.01 16 29 C -0.16 -0.10 7.70 31.21 0.24 0.14 16 30 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.06 0.52 5.88 -2.39 -0.01 0.51 16 33 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 34 H 0.10 -0.66 8.14 -2.39 -0.02 -0.68 16 35 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 36 H 0.06 0.46 5.88 -2.39 -0.01 0.44 16 37 H 0.09 -0.12 8.14 -2.39 -0.02 -0.14 16 38 H 0.06 0.04 8.14 -2.38 -0.02 0.02 16 39 H 0.41 -2.22 6.26 -92.71 -0.58 -2.80 16 40 H 0.10 -0.80 8.14 -2.38 -0.02 -0.82 16 41 H 0.14 -1.26 8.14 -2.39 -0.02 -1.28 16 42 H 0.40 -2.04 4.16 -92.71 -0.39 -2.43 16 43 H 0.15 -1.32 6.36 -2.91 -0.02 -1.34 16 44 H 0.16 -1.69 8.06 -2.91 -0.02 -1.72 16 45 H 0.44 -6.25 8.96 -92.70 -0.83 -7.08 16 46 H 0.22 -3.45 6.35 -2.91 -0.02 -3.47 16 47 H 0.08 0.59 7.96 -2.39 -0.02 0.57 16 48 H 0.39 -1.99 8.70 -74.06 -0.64 -2.63 16 49 H -0.31 -1.73 7.11 99.48 0.71 -1.02 16 50 H -0.28 -0.10 7.11 99.48 0.71 0.61 16 51 H 0.11 1.63 7.64 -2.91 -0.02 1.61 16 52 H 0.12 -0.17 8.14 -2.39 -0.02 -0.19 16 53 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 Total: 0.00 -33.88 426.32 -1.81 -35.69 By element: Atomic # 1 Polarization: -20.40 SS G_CDS: -1.41 Total: -21.81 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 6.09 Total: 12.31 kcal Atomic # 7 Polarization: 3.94 SS G_CDS: -6.30 Total: -2.36 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -2.31 Total: -23.18 kcal Atomic # 14 Polarization: -2.76 SS G_CDS: 2.11 Total: -0.65 kcal Total: -33.88 -1.81 -35.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941094_13287722.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.410 kcal (2) G-P(sol) polarization free energy of solvation -33.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds