Wall clock time and date at job start Sun Mar 7 2021 00:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36416 * 125.80337 * 2 1 4 4 C 1.47374 * 127.19001 * 0.05815 * 3 2 1 5 5 O 1.21615 * 120.00106 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00099 * 179.97438 * 4 3 2 7 7 C 1.46502 * 120.00219 * 179.97438 * 6 4 3 8 8 H 1.08992 * 112.84851 * 45.99703 * 7 6 4 9 9 C 1.53785 * 113.61484 * 177.30629 * 7 6 4 10 10 C 1.53781 * 87.08083 * 89.11373 * 9 7 6 11 11 H 1.09006 * 113.61366 * 139.98021 * 10 9 7 12 12 N 1.46501 * 113.69398 * 270.87126 * 10 9 7 13 13 C 1.34773 * 120.00099 * 255.67181 * 12 10 9 14 14 O 1.21512 * 119.99910 * 359.97438 * 13 12 10 15 15 O 1.34638 * 120.00131 * 179.97438 * 13 12 10 16 16 C 1.45199 * 117.00119 * 179.97438 * 15 13 12 17 17 C 1.53003 * 109.47043 * 60.00163 * 16 15 13 18 18 C 1.52999 * 109.47222 * 180.02562 * 16 15 13 19 19 C 1.53003 * 109.47261 * 300.00130 * 16 15 13 20 20 C 1.53784 * 87.08352 * 25.43239 * 10 9 7 21 21 C 1.47018 * 105.61666 * 180.02562 * 3 2 1 22 22 C 1.34178 * 105.95480 * 0.02562 * 21 3 2 23 23 C 1.50699 * 125.43906 * 180.02562 * 22 21 3 24 24 O 1.42900 * 109.47561 * 64.98737 * 23 22 21 25 25 Si 1.86296 * 109.47385 * 184.99267 * 23 22 21 26 26 O 1.33660 * 125.80185 * 180.33372 * 2 1 3 27 27 H 1.08999 * 109.47049 * 89.99870 * 1 2 3 28 28 H 1.09009 * 109.47229 * 209.99984 * 1 2 3 29 29 H 1.09002 * 109.47135 * 329.99709 * 1 2 3 30 30 H 0.97002 * 119.99682 * 0.02562 * 6 4 3 31 31 H 1.09002 * 113.61133 * 203.66544 * 9 7 6 32 32 H 1.08994 * 113.61246 * 334.56404 * 9 7 6 33 33 H 0.96996 * 119.99627 * 75.66974 * 12 10 9 34 34 H 1.09004 * 109.46705 * 59.99527 * 17 16 15 35 35 H 1.08998 * 109.47063 * 179.97438 * 17 16 15 36 36 H 1.09002 * 109.46973 * 299.99942 * 17 16 15 37 37 H 1.09004 * 109.47014 * 59.99787 * 18 16 15 38 38 H 1.08998 * 109.47402 * 180.02562 * 18 16 15 39 39 H 1.09006 * 109.46906 * 300.00133 * 18 16 15 40 40 H 1.09001 * 109.46638 * 59.99713 * 19 16 15 41 41 H 1.08998 * 109.47060 * 180.02562 * 19 16 15 42 42 H 1.08996 * 109.47034 * 299.99908 * 19 16 15 43 43 H 1.08992 * 113.61335 * 220.01621 * 20 10 9 44 44 H 1.09005 * 113.61285 * 89.11213 * 20 10 9 45 45 H 1.08001 * 127.02178 * 179.97438 * 21 3 2 46 46 H 1.09009 * 109.47059 * 304.99360 * 23 22 21 47 47 H 0.96694 * 114.00642 * 179.97438 * 24 23 22 48 48 H 1.48501 * 110.00100 * 300.00099 * 25 23 22 49 49 H 1.48499 * 109.99778 * 61.31571 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1064 0.0000 4 6 1.8740 2.5157 0.0012 5 8 0.6890 2.7891 0.0019 6 7 2.7930 3.5015 0.0015 7 6 2.3646 4.9024 0.0022 8 1 1.5736 5.1028 0.7248 9 6 3.5304 5.9032 0.0687 10 6 3.5554 5.8559 -1.4682 11 1 3.7263 6.8274 -1.9322 12 7 4.4211 4.8061 -2.0109 13 6 5.6200 5.1262 -2.5368 14 8 5.9826 6.2857 -2.5613 15 8 6.4158 4.1613 -3.0351 16 6 7.6926 4.5791 -3.5862 17 6 8.5163 5.2700 -2.4976 18 6 8.4515 3.3542 -4.1006 19 6 7.4550 5.5536 -4.7416 20 6 2.0715 5.4576 -1.4018 21 6 3.6849 0.5990 -0.0006 22 6 3.5859 -0.7391 -0.0015 23 6 4.7459 -1.7011 -0.0019 24 8 5.4759 -1.5676 1.2193 25 14 4.1070 -3.4443 -0.1560 26 8 2.2889 -1.0840 -0.0063 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8901 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 3.7382 3.2833 0.0006 31 1 3.2482 6.8761 0.4712 32 1 4.4289 5.4965 0.5327 33 1 4.1315 3.8806 -1.9916 34 1 8.6855 4.5757 -1.6744 35 1 9.4749 5.5832 -2.9111 36 1 7.9755 6.1427 -2.1315 37 1 7.8644 2.8624 -4.8762 38 1 9.4101 3.6678 -4.5138 39 1 8.6207 2.6597 -3.2776 40 1 6.9142 6.4262 -4.3755 41 1 8.4135 5.8668 -5.1556 42 1 6.8682 5.0614 -5.5171 43 1 1.7924 4.6913 -2.1248 44 1 1.3905 6.3087 -1.4013 45 1 4.5928 1.1840 -0.0012 46 1 5.4020 -1.4788 -0.8435 47 1 6.2383 -2.1584 1.2885 48 1 3.2111 -3.7597 0.9855 49 1 3.3730 -3.6048 -1.4369 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941094_13308374.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:27:27 Heat of formation + Delta-G solvation = -99.659391 kcal Electronic energy + Delta-G solvation = -32820.041297 eV Core-core repulsion = 28330.979586 eV Total energy + Delta-G solvation = -4489.061711 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.176 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.92955 -42.12266 -41.21787 -39.60400 -37.93592 -37.87994 -35.44855 -34.89514 -34.28650 -33.52592 -33.12331 -29.57058 -28.38106 -28.30854 -26.94169 -26.62157 -25.53050 -24.41413 -23.34359 -22.21151 -21.46673 -20.84453 -20.37046 -19.34086 -18.75922 -18.47943 -17.68301 -17.43768 -17.31795 -17.15971 -17.07142 -16.47747 -16.41691 -15.85143 -15.78641 -15.59557 -15.45880 -15.25195 -14.84394 -14.49304 -14.35427 -14.24172 -14.19369 -13.98638 -13.85037 -13.43948 -13.35860 -13.18031 -13.13345 -13.01428 -12.91635 -12.88020 -12.62658 -12.56512 -12.32714 -12.22233 -12.11829 -11.54428 -11.41734 -11.21729 -11.15214 -11.06621 -10.48429 -10.38388 -10.15379 -9.70015 -5.09655 0.07410 0.69374 1.05531 1.15339 1.39283 1.62689 1.66943 1.97596 2.00486 2.11825 3.03925 3.12781 3.27817 3.43736 3.59431 3.61307 3.65119 3.72813 3.74954 3.78774 3.93172 4.02099 4.03010 4.23339 4.34647 4.44638 4.45174 4.53413 4.54654 4.60324 4.61778 4.65799 4.69860 4.75623 4.76734 4.80034 4.85408 4.87010 4.90624 4.93066 4.99348 5.09195 5.09590 5.21032 5.26035 5.31982 5.47754 5.56040 5.75794 6.26302 6.32921 6.82830 7.02332 7.25562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.078 3.922 3 C -0.265 4.265 4 C 0.596 3.404 5 O -0.562 6.562 6 N -0.699 5.699 7 C 0.117 3.883 8 H 0.095 0.905 9 C -0.140 4.140 10 C 0.131 3.869 11 H 0.103 0.897 12 N -0.688 5.688 13 C 0.647 3.353 14 O -0.587 6.587 15 O -0.368 6.368 16 C 0.129 3.871 17 C -0.180 4.180 18 C -0.138 4.138 19 C -0.182 4.182 20 C -0.145 4.145 21 C -0.141 4.141 22 C -0.035 4.035 23 C -0.036 4.036 24 O -0.559 6.559 25 Si 0.803 3.197 26 O -0.193 6.193 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.408 0.592 31 H 0.131 0.869 32 H 0.079 0.921 33 H 0.409 0.591 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.087 0.913 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.127 0.873 45 H 0.183 0.817 46 H 0.130 0.870 47 H 0.414 0.586 48 H -0.309 1.309 49 H -0.294 1.294 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.072 -3.589 -0.996 7.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.025 3.975 3 C -0.269 4.269 4 C 0.385 3.615 5 O -0.442 6.442 6 N -0.351 5.351 7 C 0.012 3.988 8 H 0.113 0.887 9 C -0.179 4.179 10 C 0.027 3.973 11 H 0.121 0.879 12 N -0.347 5.347 13 C 0.401 3.599 14 O -0.477 6.477 15 O -0.283 6.283 16 C 0.092 3.908 17 C -0.237 4.237 18 C -0.195 4.195 19 C -0.240 4.240 20 C -0.184 4.184 21 C -0.160 4.160 22 C -0.082 4.082 23 C -0.145 4.145 24 O -0.371 6.371 25 Si 0.709 3.291 26 O -0.091 6.091 27 H 0.120 0.880 28 H 0.110 0.890 29 H 0.122 0.878 30 H 0.245 0.755 31 H 0.149 0.851 32 H 0.098 0.902 33 H 0.245 0.755 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.145 0.855 45 H 0.200 0.800 46 H 0.147 0.853 47 H 0.267 0.733 48 H -0.237 1.237 49 H -0.221 1.221 Dipole moment (debyes) X Y Z Total from point charges 4.307 -3.189 -1.020 5.455 hybrid contribution 0.003 0.233 -0.004 0.233 sum 4.310 -2.956 -1.024 5.325 Atomic orbital electron populations 1.20731 0.82453 1.05514 1.05345 1.23331 0.94910 0.82998 0.96278 1.21249 0.94029 0.93657 1.17977 1.17187 0.85236 0.83900 0.75214 1.90769 1.17603 1.84324 1.51537 1.45528 1.09684 1.05126 1.74798 1.22023 0.98602 0.79773 0.98357 0.88679 1.23767 0.97829 1.00768 0.95537 1.21989 0.89436 0.91100 0.94782 0.87909 1.44516 1.15419 1.11952 1.62850 1.18270 0.81581 0.83195 0.76833 1.90916 1.74611 1.19966 1.62236 1.86312 1.31182 1.38315 1.72467 1.22360 0.78601 0.96647 0.93144 1.22479 1.00959 1.01643 0.98666 1.21900 1.00076 0.95422 1.02105 1.22497 1.03952 0.99999 0.97512 1.23773 0.95104 1.02613 0.96947 1.22807 0.96532 0.93257 1.03369 1.21820 0.82262 0.95466 1.08624 1.23947 0.91489 1.07142 0.91952 1.86410 1.47164 1.67285 1.36275 0.94353 0.82981 0.75811 0.75905 1.83708 1.17441 1.35895 1.72046 0.88049 0.89032 0.87791 0.75467 0.85118 0.90229 0.75466 0.91629 0.89523 0.91727 0.91342 0.88342 0.90786 0.91763 0.89419 0.92146 0.91404 0.85474 0.80004 0.85272 0.73268 1.23711 1.22146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.29 9.89 71.24 0.70 0.42 16 2 C 0.08 0.58 7.37 25.26 0.19 0.76 16 3 C -0.26 -1.61 6.31 -18.99 -0.12 -1.73 16 4 C 0.60 3.65 7.81 86.65 0.68 4.33 16 5 O -0.56 -6.56 14.78 -4.08 -0.06 -6.62 16 6 N -0.70 0.09 4.34 -443.34 -1.92 -1.83 16 7 C 0.12 -0.19 4.00 45.52 0.18 -0.01 16 8 H 0.10 0.02 8.04 -2.39 -0.02 0.00 16 9 C -0.14 0.60 7.58 31.12 0.24 0.83 16 10 C 0.13 -0.19 4.28 45.52 0.19 0.01 16 11 H 0.10 0.09 7.54 -2.38 -0.02 0.07 16 12 N -0.69 -0.24 4.97 -567.60 -2.82 -3.06 16 13 C 0.65 3.54 8.06 129.79 1.05 4.58 16 14 O -0.59 -6.12 11.52 19.80 0.23 -5.89 16 15 O -0.37 -1.45 9.94 -55.48 -0.55 -2.00 16 16 C 0.13 0.19 1.13 -10.79 -0.01 0.17 16 17 C -0.18 -0.26 8.37 71.98 0.60 0.34 16 18 C -0.14 0.51 8.85 71.98 0.64 1.15 16 19 C -0.18 -0.45 8.37 71.98 0.60 0.15 16 20 C -0.15 0.33 7.62 31.12 0.24 0.57 16 21 C -0.14 -0.36 10.48 23.65 0.25 -0.11 16 22 C -0.03 -0.15 6.22 24.76 0.15 0.00 16 23 C -0.04 0.11 2.96 71.24 0.21 0.33 16 24 O -0.56 2.08 12.86 -148.98 -1.92 0.17 16 25 Si 0.80 -2.03 32.09 68.60 2.20 0.18 16 26 O -0.19 -1.63 8.90 4.44 0.04 -1.59 16 27 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 28 H 0.09 0.06 8.14 -2.38 -0.02 0.04 16 29 H 0.10 0.56 6.48 -2.39 -0.02 0.55 16 30 H 0.41 -1.41 7.00 -92.71 -0.65 -2.06 16 31 H 0.13 -0.96 8.14 -2.39 -0.02 -0.98 16 32 H 0.08 -0.28 8.13 -2.39 -0.02 -0.30 16 33 H 0.41 -0.71 7.31 -92.71 -0.68 -1.39 16 34 H 0.06 0.02 8.14 -2.38 -0.02 0.00 16 35 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 36 H 0.06 0.44 5.88 -2.39 -0.01 0.42 16 37 H 0.07 -0.24 8.14 -2.38 -0.02 -0.26 16 38 H 0.10 -0.66 8.14 -2.39 -0.02 -0.68 16 39 H 0.07 -0.34 8.14 -2.38 -0.02 -0.36 16 40 H 0.06 0.50 5.88 -2.39 -0.01 0.48 16 41 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 42 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 44 H 0.13 -0.66 8.14 -2.38 -0.02 -0.68 16 45 H 0.18 -0.60 7.74 -2.91 -0.02 -0.63 16 46 H 0.13 -1.26 7.96 -2.38 -0.02 -1.28 16 47 H 0.41 -6.23 8.74 -74.06 -0.65 -6.88 16 48 H -0.31 -2.28 7.11 99.48 0.71 -1.57 16 49 H -0.29 -1.24 7.11 99.48 0.71 -0.54 16 Total: 0.00 -24.97 401.32 0.05 -24.92 By element: Atomic # 1 Polarization: -15.13 SS G_CDS: -0.93 Total: -16.07 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 5.79 Total: 11.79 kcal Atomic # 7 Polarization: -0.14 SS G_CDS: -4.74 Total: -4.89 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -2.26 Total: -15.93 kcal Atomic # 14 Polarization: -2.03 SS G_CDS: 2.20 Total: 0.18 kcal Total: -24.97 0.05 -24.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941094_13308374.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.743 kcal (2) G-P(sol) polarization free energy of solvation -24.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds