Wall clock time and date at job start Sun Mar 7 2021 00:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 O 1.45206 * 109.46989 * 119.99587 * 2 1 3 6 6 C 1.34639 * 116.99892 * 59.99951 * 5 2 1 7 7 O 1.21513 * 119.99857 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99616 * 179.97438 * 6 5 2 9 9 C 1.46507 * 119.99575 * 179.97438 * 8 6 5 10 10 H 1.08999 * 112.84738 * 334.66876 * 9 8 6 11 11 C 1.53776 * 113.61084 * 105.86584 * 9 8 6 12 12 C 1.54049 * 86.98750 * 89.16229 * 11 9 8 13 13 H 1.08999 * 113.62537 * 139.97653 * 12 11 9 14 14 N 1.46504 * 113.68657 * 270.87220 * 12 11 9 15 15 C 1.34776 * 119.99983 * 252.52171 * 14 12 11 16 16 O 1.21593 * 119.99840 * 0.02562 * 15 14 12 17 17 C 1.47528 * 120.00092 * 179.97438 * 15 14 12 18 18 C 1.40141 * 120.19110 * 179.72852 * 17 15 14 19 19 O 1.35649 * 120.15020 * 0.02562 * 18 17 15 20 20 C 1.38716 * 119.69692 * 179.77658 * 18 17 15 21 21 C 1.38048 * 120.08304 * 0.50103 * 20 18 17 22 22 C 1.50707 * 119.80130 * 179.72406 * 21 20 18 23 23 O 1.42893 * 109.47102 * 300.02306 * 22 21 20 24 24 Si 1.86304 * 109.46818 * 180.02562 * 22 21 20 25 25 C 1.38547 * 120.39300 * 359.74899 * 21 20 18 26 26 C 1.37786 * 120.30317 * 0.02562 * 25 21 20 27 27 C 1.53781 * 87.07893 * 25.42790 * 12 11 9 28 28 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 29 29 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 30 30 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 33 33 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 34 34 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 35 35 H 1.09002 * 109.47153 * 60.00008 * 4 2 1 36 36 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 37 37 H 0.96996 * 120.00663 * 0.02562 * 8 6 5 38 38 H 1.09007 * 113.61050 * 203.66272 * 11 9 8 39 39 H 1.08997 * 113.62144 * 334.56619 * 11 9 8 40 40 H 0.96998 * 119.99719 * 72.53234 * 14 12 11 41 41 H 0.96700 * 114.00414 * 90.00259 * 19 18 17 42 42 H 1.08000 * 119.95362 * 180.23528 * 20 18 17 43 43 H 1.09000 * 109.47087 * 60.02774 * 22 21 20 44 44 H 0.96703 * 114.00606 * 300.00097 * 23 22 21 45 45 H 1.48496 * 110.00197 * 58.67952 * 24 22 21 46 46 H 1.48505 * 109.99917 * 180.02562 * 24 22 21 47 47 H 1.08008 * 119.84949 * 180.02562 * 25 21 20 48 48 H 1.07996 * 120.05112 * 180.02562 * 26 25 21 49 49 H 1.08997 * 113.61652 * 220.02859 * 27 12 11 50 50 H 1.09005 * 113.61557 * 89.11751 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1857 6 6 1.6521 -1.9723 1.3385 7 8 0.9508 -2.5094 0.5042 8 7 2.0680 -2.6655 2.4169 9 6 1.6738 -4.0667 2.5835 10 1 0.7448 -4.3092 2.0675 11 6 2.8112 -5.0637 2.3057 12 6 3.1789 -4.9345 3.7961 13 1 3.4655 -5.8788 4.2588 14 7 4.1262 -3.8528 4.0770 15 6 5.4027 -4.1416 4.3987 16 8 5.7682 -5.2999 4.4554 17 6 6.3568 -3.0523 4.6810 18 6 7.6837 -3.3483 5.0214 19 8 8.0973 -4.6382 5.0926 20 6 8.5733 -2.3159 5.2803 21 6 8.1495 -1.0039 5.2125 22 6 9.1199 0.1126 5.5010 23 8 9.6202 -0.0234 6.8326 24 14 8.2503 1.7511 5.3287 25 6 6.8373 -0.7073 4.8813 26 6 5.9412 -1.7200 4.6166 27 6 1.7112 -4.5477 4.0437 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6766 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2489 37 1 2.6275 -2.2367 3.0830 38 1 2.4619 -6.0579 2.0269 39 1 3.5752 -4.6777 1.6310 40 1 3.8346 -2.9288 4.0315 41 1 8.4420 -4.9873 4.2593 42 1 9.5978 -2.5392 5.5393 43 1 9.9488 0.0651 4.7947 44 1 8.9360 0.0097 7.5152 45 1 7.0986 1.8158 6.2639 46 1 9.1967 2.8605 5.6100 47 1 6.5152 0.3224 4.8304 48 1 4.9194 -1.4842 4.3585 49 1 1.5879 -3.7452 4.7710 50 1 1.0617 -5.4010 4.2390 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941094_13422076.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:27:34 Heat of formation + Delta-G solvation = -124.289637 kcal Electronic energy + Delta-G solvation = -34105.632240 eV Core-core repulsion = 29487.276340 eV Total energy + Delta-G solvation = -4618.355899 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 365.176 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.19763 -41.64242 -40.74127 -39.43103 -38.46958 -37.84212 -37.24927 -35.39873 -34.76308 -33.79270 -32.42309 -31.12921 -28.34435 -28.25736 -27.75169 -26.81171 -25.92616 -24.05538 -23.90774 -22.97460 -21.83428 -21.30112 -20.73961 -19.42820 -19.29563 -18.72103 -18.30106 -17.60440 -17.39217 -17.20108 -16.77553 -16.53847 -16.48377 -16.21693 -15.96108 -15.93153 -15.71766 -15.47350 -15.25111 -15.18872 -14.84825 -14.51361 -14.35507 -13.89042 -13.74887 -13.63210 -13.31616 -13.27711 -13.09082 -13.01489 -12.89478 -12.88738 -12.82715 -12.50630 -12.38742 -12.28095 -12.17230 -11.91243 -11.64315 -11.55869 -11.37071 -11.12053 -11.01521 -10.67743 -10.32076 -10.23320 -10.03837 -9.80571 -4.90440 -0.44703 0.12723 1.05527 1.27774 1.62462 1.65850 1.71616 1.92641 1.99718 2.52846 3.04210 3.11154 3.33182 3.37269 3.44828 3.50072 3.64978 3.73529 3.77096 3.81710 3.84955 3.97659 4.04704 4.05729 4.23908 4.43076 4.48378 4.53658 4.61026 4.64050 4.66501 4.73151 4.73880 4.75878 4.80086 4.84743 4.89550 4.92466 4.94504 4.96529 5.00261 5.11336 5.13647 5.22381 5.26365 5.29998 5.35950 5.52065 5.56811 5.59105 6.29082 6.32947 6.44612 6.69672 7.07314 7.29582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.130 3.870 3 C -0.138 4.138 4 C -0.182 4.182 5 O -0.363 6.363 6 C 0.647 3.353 7 O -0.589 6.589 8 N -0.684 5.684 9 C 0.132 3.868 10 H 0.104 0.896 11 C -0.161 4.161 12 C 0.112 3.888 13 H 0.096 0.904 14 N -0.698 5.698 15 C 0.560 3.440 16 O -0.557 6.557 17 C -0.181 4.181 18 C 0.154 3.846 19 O -0.498 6.498 20 C -0.139 4.139 21 C -0.069 4.069 22 C -0.094 4.094 23 O -0.548 6.548 24 Si 0.778 3.222 25 C -0.129 4.129 26 C -0.055 4.055 27 C -0.132 4.132 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.407 0.593 38 H 0.115 0.885 39 H 0.061 0.939 40 H 0.403 0.597 41 H 0.408 0.592 42 H 0.135 0.865 43 H 0.129 0.871 44 H 0.388 0.612 45 H -0.273 1.273 46 H -0.306 1.306 47 H 0.164 0.836 48 H 0.163 0.837 49 H 0.096 0.904 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.978 6.327 -1.936 7.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.094 3.906 3 C -0.195 4.195 4 C -0.240 4.240 5 O -0.278 6.278 6 C 0.401 3.599 7 O -0.479 6.479 8 N -0.345 5.345 9 C 0.027 3.973 10 H 0.122 0.878 11 C -0.201 4.201 12 C 0.006 3.994 13 H 0.115 0.885 14 N -0.352 5.352 15 C 0.349 3.651 16 O -0.435 6.435 17 C -0.185 4.185 18 C 0.108 3.892 19 O -0.311 6.311 20 C -0.157 4.157 21 C -0.069 4.069 22 C -0.201 4.201 23 O -0.357 6.357 24 Si 0.682 3.318 25 C -0.147 4.147 26 C -0.073 4.073 27 C -0.170 4.170 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.245 0.755 38 H 0.134 0.866 39 H 0.080 0.920 40 H 0.242 0.758 41 H 0.267 0.733 42 H 0.153 0.847 43 H 0.147 0.853 44 H 0.237 0.763 45 H -0.199 1.199 46 H -0.235 1.235 47 H 0.181 0.819 48 H 0.180 0.820 49 H 0.114 0.886 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.937 6.022 -1.708 6.915 hybrid contribution 0.586 -0.421 0.820 1.092 sum -2.352 5.601 -0.888 6.139 Atomic orbital electron populations 1.22494 0.94215 1.03680 1.03559 1.22334 0.94302 0.92645 0.81315 1.21899 1.02768 0.90566 1.04275 1.22491 1.01756 1.02186 0.97518 1.86298 1.71391 1.22875 1.47224 1.18289 0.78495 0.80850 0.82248 1.90928 1.41992 1.71066 1.43926 1.44440 1.55047 1.11823 1.23187 1.21990 0.98705 0.77988 0.98573 0.87805 1.24013 0.98393 1.01206 0.96523 1.22091 0.89344 0.91560 0.96379 0.88544 1.45583 1.09216 1.10034 1.70384 1.18302 0.82463 0.88308 0.76071 1.90820 1.78219 1.22057 1.52429 1.20428 0.94631 0.94570 1.08846 1.18742 0.90866 0.84582 0.95024 1.84719 1.83698 1.23634 1.39055 1.21351 1.00412 0.91708 1.02241 1.20504 0.95198 0.94435 0.96808 1.25477 1.02653 1.05705 0.86302 1.86600 1.38518 1.94903 1.15642 0.94044 0.76496 0.71436 0.89822 1.21230 0.92054 1.00661 1.00717 1.21424 1.01066 0.89601 0.95241 1.23726 0.94626 1.03795 0.94856 0.91701 0.89699 0.91838 0.90691 0.88665 0.90851 0.91959 0.89660 0.91773 0.75527 0.86628 0.92046 0.75773 0.73251 0.84709 0.85302 0.76284 1.19863 1.23472 0.81897 0.81987 0.88583 0.84711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.09 8.37 71.98 0.60 0.51 16 2 C 0.13 -0.06 1.13 -10.80 -0.01 -0.07 16 3 C -0.14 0.80 8.85 71.98 0.64 1.44 16 4 C -0.18 -0.15 8.37 71.98 0.60 0.46 16 5 O -0.36 -0.31 9.94 -55.49 -0.55 -0.86 16 6 C 0.65 1.88 8.06 129.79 1.05 2.92 16 7 O -0.59 -5.29 11.50 19.80 0.23 -5.06 16 8 N -0.68 2.36 5.13 -567.60 -2.91 -0.55 16 9 C 0.13 -0.52 4.30 45.52 0.20 -0.32 16 10 H 0.10 -0.13 7.50 -2.39 -0.02 -0.15 16 11 C -0.16 0.40 7.70 31.21 0.24 0.64 16 12 C 0.11 -0.33 4.33 45.61 0.20 -0.13 16 13 H 0.10 0.10 7.46 -2.39 -0.02 0.08 16 14 N -0.70 2.05 5.09 -442.76 -2.25 -0.20 16 15 C 0.56 2.40 7.76 86.69 0.67 3.07 16 16 O -0.56 -7.08 14.76 16.91 0.25 -6.83 16 17 C -0.18 -0.23 5.89 -20.01 -0.12 -0.35 16 18 C 0.15 0.62 6.72 22.85 0.15 0.78 16 19 O -0.50 -3.53 11.58 -68.72 -0.80 -4.33 16 20 C -0.14 -0.15 9.53 22.34 0.21 0.06 16 21 C -0.07 0.21 5.39 -19.83 -0.11 0.11 16 22 C -0.09 0.36 2.81 71.24 0.20 0.56 16 23 O -0.55 -0.26 12.76 -148.98 -1.90 -2.16 16 24 Si 0.78 -4.83 29.77 68.60 2.04 -2.79 16 25 C -0.13 0.87 8.64 22.24 0.19 1.06 16 26 C -0.05 0.32 9.54 22.52 0.21 0.54 16 27 C -0.13 1.06 7.58 31.12 0.24 1.30 16 28 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 29 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 30 H 0.06 0.38 5.88 -2.39 -0.01 0.36 16 31 H 0.07 -0.50 8.14 -2.39 -0.02 -0.52 16 32 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 33 H 0.07 -0.47 8.14 -2.39 -0.02 -0.49 16 34 H 0.06 0.40 5.88 -2.39 -0.01 0.39 16 35 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 36 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 37 H 0.41 -3.48 6.28 -92.71 -0.58 -4.06 16 38 H 0.12 -0.48 8.14 -2.38 -0.02 -0.50 16 39 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.40 -3.49 4.19 -92.71 -0.39 -3.88 16 41 H 0.41 0.07 9.06 -74.06 -0.67 -0.60 16 42 H 0.14 0.22 8.06 -2.91 -0.02 0.19 16 43 H 0.13 -0.67 7.96 -2.39 -0.02 -0.69 16 44 H 0.39 -2.00 8.70 -74.06 -0.64 -2.64 16 45 H -0.27 0.97 7.11 99.48 0.71 1.68 16 46 H -0.31 -0.81 7.11 99.48 0.71 -0.11 16 47 H 0.16 -1.99 4.85 -2.91 -0.01 -2.00 16 48 H 0.16 -2.14 6.40 -2.91 -0.02 -2.16 16 49 H 0.10 -0.96 8.14 -2.39 -0.02 -0.98 16 50 H 0.13 -1.45 8.14 -2.38 -0.02 -1.47 16 Total: 0.00 -27.03 401.48 -1.95 -28.98 By element: Atomic # 1 Polarization: -17.53 SS G_CDS: -1.22 Total: -18.75 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 5.17 Total: 12.56 kcal Atomic # 7 Polarization: 4.41 SS G_CDS: -5.16 Total: -0.75 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -2.77 Total: -19.25 kcal Atomic # 14 Polarization: -4.83 SS G_CDS: 2.04 Total: -2.79 kcal Total: -27.03 -1.95 -28.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941094_13422076.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.313 kcal (2) G-P(sol) polarization free energy of solvation -27.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds