Wall clock time and date at job start Sun Mar 7 2021 00:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47363 * 2 1 4 4 C 1.53000 * 109.46724 * 239.99790 * 2 1 3 5 5 O 1.45201 * 109.47005 * 120.00246 * 2 1 3 6 6 C 1.34640 * 117.00084 * 59.99754 * 5 2 1 7 7 O 1.21507 * 119.99886 * 359.97438 * 6 5 2 8 8 N 1.34781 * 119.99814 * 180.02562 * 6 5 2 9 9 C 1.46496 * 119.99572 * 179.97438 * 8 6 5 10 10 H 1.09001 * 112.85554 * 336.19589 * 9 8 6 11 11 C 1.53955 * 113.66330 * 107.44303 * 9 8 6 12 12 C 1.53791 * 87.01917 * 139.93133 * 11 9 8 13 13 H 1.08996 * 113.61486 * 89.23214 * 12 11 9 14 14 N 1.46505 * 113.61264 * 220.04706 * 12 11 9 15 15 C 1.34777 * 119.99724 * 254.13682 * 14 12 11 16 16 O 1.21613 * 120.00252 * 359.97438 * 15 14 12 17 17 C 1.47382 * 119.99755 * 179.72668 * 15 14 12 18 18 C 1.36415 * 127.19124 * 0.29611 * 17 15 14 19 19 O 1.33649 * 108.39982 * 179.97438 * 18 17 15 20 20 C 1.34218 * 110.90427 * 0.02562 * 19 18 17 21 21 C 1.50706 * 125.43684 * 180.02562 * 20 19 18 22 22 O 1.42898 * 109.46704 * 245.02118 * 21 20 19 23 23 Si 1.86296 * 109.46957 * 5.01964 * 21 20 19 24 24 C 1.34177 * 109.12538 * 359.72926 * 20 19 18 25 25 C 1.53775 * 87.17102 * 334.63646 * 12 11 9 26 26 H 1.08999 * 109.46694 * 299.99917 * 1 2 3 27 27 H 1.08996 * 109.46985 * 59.99442 * 1 2 3 28 28 H 1.08991 * 109.47235 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47142 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47043 * 300.00194 * 3 2 1 31 31 H 1.08999 * 109.47148 * 60.00361 * 3 2 1 32 32 H 1.09004 * 109.47584 * 299.99877 * 4 2 1 33 33 H 1.09000 * 109.47031 * 60.00205 * 4 2 1 34 34 H 1.09003 * 109.46895 * 180.02562 * 4 2 1 35 35 H 0.96994 * 120.00208 * 359.97438 * 8 6 5 36 36 H 1.08992 * 113.61969 * 25.41138 * 11 9 8 37 37 H 1.09006 * 113.66413 * 254.45224 * 11 9 8 38 38 H 0.97000 * 119.99792 * 74.13250 * 14 12 11 39 39 H 1.08010 * 125.80183 * 359.95704 * 18 17 15 40 40 H 1.08997 * 109.46966 * 125.02074 * 21 20 19 41 41 H 0.96700 * 113.99815 * 179.97438 * 22 21 20 42 42 H 1.48493 * 110.00407 * 300.00165 * 23 21 20 43 43 H 1.48499 * 109.99905 * 61.32088 * 23 21 20 44 44 H 1.07997 * 127.02414 * 180.26763 * 24 20 19 45 45 H 1.08996 * 113.61556 * 139.93979 * 25 12 11 46 46 H 1.09005 * 113.61870 * 270.84225 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9724 1.3383 7 8 0.9508 -2.5094 0.5040 8 7 2.0672 -2.6655 2.4172 9 6 1.6730 -4.0666 2.5836 10 1 0.7586 -4.3160 2.0452 11 6 2.8211 -5.0641 2.3444 12 6 2.2719 -5.8595 3.5406 13 1 1.5220 -6.6008 3.2648 14 7 3.3160 -6.4037 4.4125 15 6 3.5955 -7.7219 4.3872 16 8 2.9809 -8.4597 3.6409 17 6 4.6500 -8.2685 5.2599 18 6 5.4246 -7.5805 6.1473 19 8 6.2563 -8.4435 6.7388 20 6 6.0638 -9.6883 6.2753 21 6 6.8233 -10.9126 6.7177 22 8 7.5876 -11.4204 5.6223 23 14 7.9674 -10.4616 8.1171 24 6 5.0828 -9.6699 5.3601 25 6 1.6734 -4.5369 4.0478 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 1.6766 -1.7490 -1.2492 33 1 1.6766 -0.2075 -2.1392 34 1 3.1300 -0.7217 -1.2490 35 1 2.6268 -2.2367 3.0833 36 1 3.8104 -4.6412 2.5185 37 1 2.7479 -5.5961 1.3958 38 1 3.8060 -5.8153 5.0079 39 1 5.3746 -6.5188 6.3391 40 1 6.1201 -11.6743 7.0543 41 1 8.1034 -12.2102 5.8353 42 1 8.9310 -9.4236 7.6709 43 1 7.1821 -9.9618 9.2741 44 1 4.6924 -10.5121 4.8082 45 1 0.6752 -4.6437 4.4723 46 1 2.3484 -3.9694 4.6885 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941094_13456056.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:27:54 Heat of formation + Delta-G solvation = -104.422306 kcal Electronic energy + Delta-G solvation = -28842.592920 eV Core-core repulsion = 24508.862293 eV Total energy + Delta-G solvation = -4333.730628 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.86042 -41.97479 -41.11860 -39.64450 -37.95809 -37.90104 -35.66064 -35.02410 -34.20433 -33.36559 -31.85617 -28.40253 -28.33050 -27.01386 -26.85527 -26.23527 -24.66108 -22.92516 -22.35955 -21.62953 -21.12139 -20.65298 -19.28013 -18.89811 -18.67936 -18.11217 -17.52036 -17.29154 -17.21846 -17.18068 -16.31801 -16.23944 -15.95445 -15.82358 -15.58100 -15.41896 -15.35688 -14.72076 -14.42248 -14.29361 -14.20689 -13.97188 -13.79573 -13.57466 -13.39513 -13.18047 -12.95919 -12.89844 -12.74513 -12.62532 -12.52472 -12.42832 -12.24146 -12.16873 -12.05024 -11.43053 -11.30383 -11.15191 -11.07710 -10.49064 -10.33879 -10.13743 -9.87598 -5.03271 0.12452 0.70287 1.09451 1.18160 1.53021 1.68960 1.69188 1.98021 2.01367 2.13581 3.11510 3.24331 3.32460 3.40854 3.43918 3.69346 3.71093 3.73783 3.77272 3.81998 3.84649 3.91340 4.21254 4.34372 4.40539 4.41640 4.54373 4.55743 4.58060 4.60341 4.70866 4.73283 4.77256 4.80811 4.81419 4.84841 4.91410 4.95616 5.03309 5.09375 5.22598 5.23877 5.31546 5.45199 5.55817 5.71442 6.34706 6.39900 6.81738 7.05892 7.30496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.128 3.872 3 C -0.137 4.137 4 C -0.181 4.181 5 O -0.368 6.368 6 C 0.642 3.358 7 O -0.595 6.595 8 N -0.685 5.685 9 C 0.141 3.859 10 H 0.106 0.894 11 C -0.164 4.164 12 C 0.124 3.876 13 H 0.101 0.899 14 N -0.695 5.695 15 C 0.589 3.411 16 O -0.582 6.582 17 C -0.264 4.264 18 C 0.058 3.942 19 O -0.185 6.185 20 C -0.029 4.029 21 C -0.050 4.050 22 O -0.564 6.564 23 Si 0.818 3.182 24 C -0.145 4.145 25 C -0.126 4.126 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.420 0.580 36 H 0.104 0.896 37 H 0.059 0.941 38 H 0.418 0.582 39 H 0.265 0.735 40 H 0.119 0.881 41 H 0.413 0.587 42 H -0.301 1.301 43 H -0.288 1.288 44 H 0.152 0.848 45 H 0.098 0.902 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.243 2.586 7.212 8.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.194 4.194 4 C -0.238 4.238 5 O -0.282 6.282 6 C 0.396 3.604 7 O -0.486 6.486 8 N -0.344 5.344 9 C 0.036 3.964 10 H 0.124 0.876 11 C -0.204 4.204 12 C 0.018 3.982 13 H 0.119 0.881 14 N -0.347 5.347 15 C 0.378 3.622 16 O -0.462 6.462 17 C -0.269 4.269 18 C -0.012 4.012 19 O -0.082 6.082 20 C -0.077 4.077 21 C -0.158 4.158 22 O -0.376 6.376 23 Si 0.722 3.278 24 C -0.165 4.165 25 C -0.165 4.165 26 H 0.082 0.918 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.116 0.884 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.258 0.742 36 H 0.122 0.878 37 H 0.078 0.922 38 H 0.257 0.743 39 H 0.281 0.719 40 H 0.137 0.863 41 H 0.266 0.734 42 H -0.229 1.229 43 H -0.215 1.215 44 H 0.170 0.830 45 H 0.116 0.884 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.678 3.060 6.660 8.200 hybrid contribution -0.392 0.282 -0.528 0.716 sum 3.286 3.342 6.131 7.717 Atomic orbital electron populations 1.22474 0.94018 1.03676 1.03573 1.22346 0.94476 0.92598 0.81457 1.21887 1.02453 0.90794 1.04297 1.22478 1.01610 1.02207 0.97500 1.86309 1.71498 1.23233 1.47196 1.18448 0.78574 0.80749 0.82633 1.90916 1.42323 1.71077 1.44299 1.44603 1.54891 1.11869 1.23054 1.22268 0.98369 0.77326 0.98397 0.87598 1.24068 1.00184 0.97111 0.99008 1.22197 0.90432 0.94650 0.90877 0.88059 1.45537 1.38959 1.07020 1.43151 1.17446 0.81301 0.82554 0.80879 1.90797 1.53139 1.59926 1.42383 1.21532 1.04480 0.95092 1.05780 1.25371 0.88105 0.96649 0.91038 1.83737 1.51823 1.17121 1.55504 1.21707 1.00516 0.84837 1.00598 1.24175 1.01099 0.91803 0.98694 1.86422 1.64281 1.50688 1.36236 0.93952 0.77359 0.83839 0.72687 1.22621 0.97810 0.96677 0.99424 1.23703 1.04119 0.93561 0.95111 0.91762 0.89540 0.91854 0.91174 0.88394 0.91017 0.91939 0.89506 0.91979 0.74199 0.87772 0.92247 0.74329 0.71942 0.86319 0.73360 1.22925 1.21497 0.82985 0.88371 0.85584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.58 8.37 71.98 0.60 0.02 16 2 C 0.13 0.37 1.13 -10.79 -0.01 0.35 16 3 C -0.14 0.32 8.85 71.98 0.64 0.96 16 4 C -0.18 -0.68 8.37 71.98 0.60 -0.08 16 5 O -0.37 -1.76 9.94 -55.49 -0.55 -2.31 16 6 C 0.64 3.90 8.06 129.79 1.05 4.95 16 7 O -0.60 -7.32 11.48 19.82 0.23 -7.09 16 8 N -0.68 1.03 5.36 -567.31 -3.04 -2.01 16 9 C 0.14 -0.30 4.24 45.58 0.19 -0.11 16 10 H 0.11 0.25 7.46 -2.39 -0.02 0.23 16 11 C -0.16 0.18 7.69 31.18 0.24 0.42 16 12 C 0.12 -0.25 4.21 45.52 0.19 -0.06 16 13 H 0.10 0.32 7.50 -2.39 -0.02 0.31 16 14 N -0.70 1.97 5.35 -443.32 -2.37 -0.40 16 15 C 0.59 3.96 7.81 86.65 0.68 4.64 16 16 O -0.58 -9.78 16.60 -4.07 -0.07 -9.85 16 17 C -0.26 -1.27 6.31 -18.99 -0.12 -1.39 16 18 C 0.06 -0.12 11.61 67.39 0.78 0.66 16 19 O -0.19 -0.67 8.90 4.46 0.04 -0.63 16 20 C -0.03 -0.15 6.22 24.76 0.15 0.00 16 21 C -0.05 0.07 2.96 71.24 0.21 0.28 16 22 O -0.56 0.44 12.86 -148.98 -1.92 -1.48 16 23 Si 0.82 -2.98 32.09 68.60 2.20 -0.78 16 24 C -0.15 -1.17 10.90 23.65 0.26 -0.91 16 25 C -0.13 1.04 7.58 31.12 0.24 1.27 16 26 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 27 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 28 H 0.06 0.55 5.88 -2.39 -0.01 0.54 16 29 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 30 H 0.10 -0.53 8.14 -2.39 -0.02 -0.55 16 31 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 32 H 0.06 0.59 5.88 -2.39 -0.01 0.57 16 33 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 34 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.42 -3.09 8.84 -92.71 -0.82 -3.91 16 36 H 0.10 -0.38 8.14 -2.39 -0.02 -0.40 16 37 H 0.06 0.24 8.14 -2.38 -0.02 0.22 16 38 H 0.42 -4.73 7.68 -92.71 -0.71 -5.44 16 39 H 0.27 -3.82 7.47 -2.91 -0.02 -3.84 16 40 H 0.12 -0.77 7.96 -2.39 -0.02 -0.79 16 41 H 0.41 -5.16 8.74 -74.06 -0.65 -5.81 16 42 H -0.30 -1.48 7.11 99.48 0.71 -0.78 16 43 H -0.29 -0.58 7.11 99.48 0.71 0.13 16 44 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 45 H 0.10 -0.84 8.14 -2.39 -0.02 -0.86 16 46 H 0.13 -1.77 8.09 -2.38 -0.02 -1.79 16 Total: 0.00 -33.57 386.11 -0.89 -34.45 By element: Atomic # 1 Polarization: -19.81 SS G_CDS: -1.11 Total: -20.92 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: 5.70 Total: 11.01 kcal Atomic # 7 Polarization: 3.01 SS G_CDS: -5.42 Total: -2.41 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -2.27 Total: -21.36 kcal Atomic # 14 Polarization: -2.98 SS G_CDS: 2.20 Total: -0.78 kcal Total: -33.57 -0.89 -34.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941094_13456056.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.969 kcal (2) G-P(sol) polarization free energy of solvation -33.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds