Wall clock time and date at job start Sun Mar 7 2021 00:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47319 * 2 1 4 4 C 1.53000 * 109.46993 * 239.99943 * 2 1 3 5 5 O 1.45201 * 109.46978 * 120.00055 * 2 1 3 6 6 C 1.34634 * 116.99818 * 59.99497 * 5 2 1 7 7 O 1.21507 * 120.00189 * 359.72959 * 6 5 2 8 8 N 1.34784 * 119.99829 * 180.02562 * 6 5 2 9 9 C 1.46499 * 119.99893 * 179.72952 * 8 6 5 10 10 H 1.08994 * 112.84864 * 334.66269 * 9 8 6 11 11 C 1.53777 * 113.61575 * 105.86345 * 9 8 6 12 12 C 1.54054 * 86.98585 * 89.15829 * 11 9 8 13 13 H 1.09000 * 113.62033 * 139.97694 * 12 11 9 14 14 N 1.46500 * 113.69021 * 270.87336 * 12 11 9 15 15 C 1.34777 * 120.00176 * 252.52626 * 14 12 11 16 16 O 1.21281 * 119.99613 * 0.02562 * 15 14 12 17 17 C 1.50702 * 120.00066 * 179.97438 * 15 14 12 18 18 C 1.53536 * 109.82263 * 278.21129 * 17 15 14 19 19 C 1.53038 * 108.55951 * 179.51181 * 18 17 15 20 20 C 1.50202 * 110.31911 * 49.57328 * 19 18 17 21 21 C 1.50701 * 118.54826 * 159.97150 * 20 19 18 22 22 O 1.42895 * 109.46964 * 289.97679 * 21 20 19 23 23 Si 1.86304 * 109.47048 * 169.98039 * 21 20 19 24 24 C 1.31111 * 122.90569 * 339.94590 * 20 19 18 25 25 N 1.38927 * 121.85104 * 0.40522 * 24 20 19 26 26 C 1.53784 * 87.07794 * 25.43063 * 12 11 9 27 27 H 1.09001 * 109.46839 * 300.00340 * 1 2 3 28 28 H 1.09003 * 109.46834 * 59.99616 * 1 2 3 29 29 H 1.08998 * 109.47606 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46982 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46956 * 299.99984 * 3 2 1 32 32 H 1.09001 * 109.47443 * 60.00029 * 3 2 1 33 33 H 1.09002 * 109.47011 * 300.00143 * 4 2 1 34 34 H 1.08994 * 109.47249 * 60.00026 * 4 2 1 35 35 H 1.09001 * 109.47037 * 180.02562 * 4 2 1 36 36 H 0.97005 * 119.99846 * 359.72740 * 8 6 5 37 37 H 1.09001 * 113.61299 * 203.66029 * 11 9 8 38 38 H 1.09002 * 113.61342 * 334.56821 * 11 9 8 39 39 H 0.97001 * 120.00178 * 72.52957 * 14 12 11 40 40 H 1.08996 * 109.80800 * 39.14532 * 17 15 14 41 41 H 1.08997 * 109.62139 * 299.23326 * 18 17 15 42 42 H 1.09004 * 109.62114 * 59.79334 * 18 17 15 43 43 H 1.09003 * 109.32914 * 289.31256 * 19 18 17 44 44 H 1.09000 * 109.33411 * 169.83243 * 19 18 17 45 45 H 1.08996 * 109.47446 * 49.97948 * 21 20 19 46 46 H 0.96699 * 114.00299 * 180.02562 * 22 21 20 47 47 H 1.48509 * 109.99870 * 298.67986 * 23 21 20 48 48 H 1.48495 * 110.00043 * 59.99670 * 23 21 20 49 49 H 1.08005 * 119.08213 * 180.42529 * 24 20 19 50 50 H 0.96995 * 120.56414 * 166.65691 * 25 24 20 51 51 H 1.08996 * 113.61919 * 220.02286 * 26 12 11 52 52 H 1.08997 * 113.60971 * 89.11854 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3383 7 8 0.9470 -2.5080 0.5063 8 7 2.0670 -2.6654 2.4172 9 6 1.6684 -4.0649 2.5865 10 1 0.7379 -4.3051 2.0723 11 6 2.8019 -5.0663 2.3087 12 6 3.1722 -4.9360 3.7984 13 1 3.4563 -5.8806 4.2620 14 7 4.1236 -3.8571 4.0762 15 6 5.3997 -4.1498 4.3965 16 8 5.7604 -5.3063 4.4543 17 6 6.3785 -3.0400 4.6818 18 6 6.9252 -2.4761 3.3625 19 6 7.9049 -1.3454 3.6849 20 6 8.8975 -1.7943 4.7190 21 6 10.1944 -1.0378 4.8486 22 8 11.0087 -1.2885 3.7014 23 14 11.0911 -1.6005 6.3816 24 6 8.6853 -2.8149 5.5142 25 7 7.5178 -3.5650 5.4487 26 6 1.7063 -4.5438 4.0474 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9564 0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 2.6297 -2.2376 3.0816 37 1 2.4489 -6.0597 2.0318 38 1 3.5663 -4.6838 1.6323 39 1 3.8352 -2.9322 4.0297 40 1 5.8856 -2.2490 5.2470 41 1 7.4426 -3.2635 2.8144 42 1 6.1029 -2.0877 2.7617 43 1 7.3519 -0.4863 4.0646 44 1 8.4350 -1.0575 2.7771 45 1 9.9867 0.0298 4.9204 46 1 11.8614 -0.8326 3.7171 47 1 10.2680 -1.3163 7.5846 48 1 11.3801 -3.0546 6.2960 49 1 9.4392 -3.0798 6.2408 50 1 7.4554 -4.4208 5.9009 51 1 1.5866 -3.7399 4.7736 52 1 1.0543 -5.3946 4.2450 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13941094_15413834.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:28:04 Heat of formation + Delta-G solvation = -88.957587 kcal Electronic energy + Delta-G solvation = -33139.235179 eV Core-core repulsion = 28721.044717 eV Total energy + Delta-G solvation = -4418.190463 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.203 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.21435 -41.51276 -40.47364 -39.19018 -37.86322 -37.32004 -35.38935 -34.83842 -33.83435 -33.33859 -32.83617 -28.37527 -28.33305 -27.89772 -27.01727 -25.99555 -25.35175 -23.96177 -23.23658 -22.00576 -21.31481 -20.81425 -19.40295 -19.18625 -19.07883 -18.19762 -17.76590 -17.55897 -17.25700 -17.15454 -16.68096 -16.26457 -16.09254 -15.93577 -15.51577 -15.31871 -15.28600 -15.20042 -14.71932 -14.51764 -14.42213 -14.28989 -14.01890 -13.84527 -13.64290 -13.46789 -13.31076 -13.17215 -13.15689 -13.07642 -12.90905 -12.87818 -12.50843 -12.44253 -12.30127 -12.05172 -11.90678 -11.70717 -11.65006 -11.35920 -11.35599 -11.04764 -10.91127 -10.39166 -10.26329 -10.10596 -8.52297 -4.91712 0.99819 1.24609 1.34707 1.38799 1.67231 1.67819 1.77817 2.00350 2.49251 2.95016 3.14564 3.27837 3.38141 3.58184 3.61545 3.67708 3.72436 3.78367 3.85987 3.88145 3.92150 3.94863 4.14174 4.29581 4.35930 4.41026 4.47110 4.48334 4.52330 4.56349 4.57783 4.58887 4.66931 4.68951 4.73973 4.75651 4.84091 4.84945 4.88598 4.98103 5.03725 5.10804 5.12534 5.22437 5.32123 5.33004 5.41726 5.50223 5.51052 6.06868 6.23703 6.25710 6.71429 6.80077 6.92898 7.30775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.137 3.863 3 C -0.142 4.142 4 C -0.185 4.185 5 O -0.365 6.365 6 C 0.653 3.347 7 O -0.559 6.559 8 N -0.696 5.696 9 C 0.134 3.866 10 H 0.114 0.886 11 C -0.164 4.164 12 C 0.115 3.885 13 H 0.111 0.889 14 N -0.710 5.710 15 C 0.517 3.483 16 O -0.522 6.522 17 C 0.136 3.864 18 C -0.126 4.126 19 C -0.053 4.053 20 C -0.230 4.230 21 C -0.045 4.045 22 O -0.549 6.549 23 Si 0.663 3.337 24 C 0.134 3.866 25 N -0.731 5.731 26 C -0.151 4.151 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.397 0.603 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.395 0.605 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.082 0.918 45 H 0.063 0.937 46 H 0.377 0.623 47 H -0.258 1.258 48 H -0.254 1.254 49 H 0.126 0.874 50 H 0.409 0.591 51 H 0.083 0.917 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.244 5.154 1.953 5.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.101 3.899 3 C -0.199 4.199 4 C -0.242 4.242 5 O -0.280 6.280 6 C 0.407 3.593 7 O -0.447 6.447 8 N -0.357 5.357 9 C 0.029 3.971 10 H 0.132 0.868 11 C -0.204 4.204 12 C 0.010 3.990 13 H 0.129 0.871 14 N -0.363 5.363 15 C 0.303 3.697 16 O -0.397 6.397 17 C 0.026 3.974 18 C -0.164 4.164 19 C -0.091 4.091 20 C -0.240 4.240 21 C -0.157 4.157 22 O -0.355 6.355 23 Si 0.565 3.435 24 C 0.014 3.986 25 N -0.365 5.365 26 C -0.189 4.189 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.233 0.767 37 H 0.126 0.874 38 H 0.097 0.903 39 H 0.231 0.769 40 H 0.109 0.891 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.101 0.899 45 H 0.081 0.919 46 H 0.223 0.777 47 H -0.183 1.183 48 H -0.179 1.179 49 H 0.143 0.857 50 H 0.246 0.754 51 H 0.102 0.898 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.975 3.293 2.005 3.977 hybrid contribution -0.389 0.413 0.163 0.590 sum -1.364 3.707 2.167 4.505 Atomic orbital electron populations 1.22531 0.93777 1.05081 1.02793 1.22141 0.94481 0.91547 0.81721 1.21885 1.02375 0.92265 1.03406 1.22525 1.01654 1.03432 0.96574 1.86295 1.71519 1.23234 1.46905 1.18050 0.78638 0.80617 0.81990 1.90933 1.40376 1.70525 1.42896 1.44487 1.55358 1.11967 1.23858 1.21949 0.99385 0.78428 0.97293 0.86837 1.24011 0.98820 1.00703 0.96821 1.22078 0.88282 0.91958 0.96681 0.87055 1.45736 1.09842 1.09524 1.71246 1.20612 0.82491 0.90443 0.76179 1.90751 1.77457 1.20985 1.50475 1.21023 0.87347 0.93984 0.95013 1.21863 1.00005 0.99769 0.94793 1.19980 0.94527 0.96492 0.98064 1.20045 0.97978 1.03096 1.02862 1.24362 0.92478 1.01037 0.97857 1.86510 1.32184 1.74056 1.42730 0.95464 0.88843 0.82728 0.76426 1.20254 0.88676 0.92640 0.96999 1.44195 1.11417 1.23645 1.57221 1.23755 0.96131 1.02995 0.96035 0.92082 0.90855 0.89413 0.91341 0.89857 0.91367 0.89457 0.90833 0.92074 0.76725 0.87371 0.90258 0.76898 0.89145 0.90313 0.90238 0.91497 0.89937 0.91855 0.77660 1.18261 1.17905 0.85719 0.75376 0.89837 0.86368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.13 8.37 37.16 0.31 0.18 16 2 C 0.14 0.08 1.13 -90.62 -0.10 -0.02 16 3 C -0.14 0.19 8.85 37.16 0.33 0.52 16 4 C -0.18 -0.16 8.37 37.16 0.31 0.15 16 5 O -0.36 -0.49 9.94 -40.31 -0.40 -0.89 16 6 C 0.65 1.17 8.06 54.06 0.44 1.60 16 7 O -0.56 -2.40 11.50 -19.28 -0.22 -2.62 16 8 N -0.70 0.88 5.13 -57.93 -0.30 0.58 16 9 C 0.13 -0.24 4.30 -67.12 -0.29 -0.53 16 10 H 0.11 -0.07 7.50 -51.93 -0.39 -0.46 16 11 C -0.16 0.23 7.70 -25.78 -0.20 0.03 16 12 C 0.12 -0.21 4.33 -66.97 -0.29 -0.50 16 13 H 0.11 -0.04 7.46 -51.93 -0.39 -0.43 16 14 N -0.71 1.38 5.14 -52.88 -0.27 1.11 16 15 C 0.52 0.46 7.08 -10.98 -0.08 0.38 16 16 O -0.52 -2.50 15.70 5.56 0.09 -2.41 16 17 C 0.14 0.00 3.36 -68.51 -0.23 -0.23 16 18 C -0.13 -0.02 5.47 -26.43 -0.14 -0.16 16 19 C -0.05 -0.04 5.85 -28.10 -0.16 -0.20 16 20 C -0.23 -0.46 5.40 -101.34 -0.55 -1.01 16 21 C -0.05 -0.02 2.80 36.01 0.10 0.08 16 22 O -0.55 -0.53 12.86 -35.23 -0.45 -0.98 16 23 Si 0.66 -0.34 29.91 -169.99 -5.08 -5.42 16 24 C 0.13 0.32 9.62 -16.08 -0.15 0.16 16 25 N -0.73 -1.30 5.46 -55.34 -0.30 -1.60 16 26 C -0.15 0.55 7.58 -25.91 -0.20 0.35 16 27 H 0.06 0.02 8.14 -51.93 -0.42 -0.40 16 28 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 29 H 0.09 0.25 5.87 -51.93 -0.30 -0.06 16 30 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 31 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 32 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 33 H 0.09 0.26 5.89 -51.93 -0.31 -0.04 16 34 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 35 H 0.06 0.04 8.14 -51.93 -0.42 -0.38 16 36 H 0.40 -1.33 6.28 -40.82 -0.26 -1.58 16 37 H 0.11 -0.24 8.14 -51.93 -0.42 -0.66 16 38 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 39 H 0.40 -1.64 6.16 -40.82 -0.25 -1.89 16 40 H 0.09 -0.17 8.14 -51.93 -0.42 -0.60 16 41 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.08 -0.14 8.14 -51.93 -0.42 -0.57 16 43 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 44 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 45 H 0.06 -0.06 7.96 -51.93 -0.41 -0.48 16 46 H 0.38 -1.46 8.74 45.56 0.40 -1.06 16 47 H -0.26 -0.49 7.11 56.52 0.40 -0.09 16 48 H -0.25 -0.68 6.89 56.52 0.39 -0.29 16 49 H 0.13 0.27 4.34 -52.48 -0.23 0.05 16 50 H 0.41 0.77 8.12 -40.82 -0.33 0.44 16 51 H 0.08 -0.35 8.14 -51.93 -0.42 -0.77 16 52 H 0.12 -0.56 8.14 -51.93 -0.42 -0.99 16 LS Contribution 406.48 15.07 6.13 6.13 Total: 0.00 -9.36 406.48 -10.17 -19.53 By element: Atomic # 1 Polarization: -5.81 SS G_CDS: -8.44 Total: -14.25 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -0.91 Total: 0.82 kcal Atomic # 7 Polarization: 0.97 SS G_CDS: -0.87 Total: 0.10 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -0.99 Total: -6.90 kcal Atomic # 14 Polarization: -0.34 SS G_CDS: -5.08 Total: -5.42 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -9.36 -10.17 -19.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941094_15413834.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.430 kcal (2) G-P(sol) polarization free energy of solvation -9.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds