Wall clock time and date at job start Sun Mar 7 2021 00:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47319 * 2 1 4 4 C 1.53000 * 109.46993 * 239.99943 * 2 1 3 5 5 O 1.45201 * 109.46978 * 120.00055 * 2 1 3 6 6 C 1.34634 * 116.99818 * 59.99497 * 5 2 1 7 7 O 1.21507 * 120.00189 * 359.72959 * 6 5 2 8 8 N 1.34784 * 119.99829 * 180.02562 * 6 5 2 9 9 C 1.46499 * 119.99893 * 179.72952 * 8 6 5 10 10 H 1.08994 * 112.84864 * 334.66269 * 9 8 6 11 11 C 1.53777 * 113.61575 * 105.86345 * 9 8 6 12 12 C 1.54054 * 86.98585 * 89.15829 * 11 9 8 13 13 H 1.09000 * 113.62033 * 139.97694 * 12 11 9 14 14 N 1.46500 * 113.69021 * 270.87336 * 12 11 9 15 15 C 1.34777 * 120.00176 * 252.52626 * 14 12 11 16 16 O 1.21281 * 119.99613 * 0.02562 * 15 14 12 17 17 C 1.50702 * 120.00066 * 179.97438 * 15 14 12 18 18 C 1.53536 * 109.82263 * 278.21129 * 17 15 14 19 19 C 1.53038 * 108.55951 * 179.51181 * 18 17 15 20 20 C 1.50202 * 110.31911 * 49.57328 * 19 18 17 21 21 C 1.50701 * 118.54826 * 159.97150 * 20 19 18 22 22 O 1.42895 * 109.46964 * 289.97679 * 21 20 19 23 23 Si 1.86304 * 109.47048 * 169.98039 * 21 20 19 24 24 C 1.31111 * 122.90569 * 339.94590 * 20 19 18 25 25 N 1.38927 * 121.85104 * 0.40522 * 24 20 19 26 26 C 1.53784 * 87.07794 * 25.43063 * 12 11 9 27 27 H 1.09001 * 109.46839 * 300.00340 * 1 2 3 28 28 H 1.09003 * 109.46834 * 59.99616 * 1 2 3 29 29 H 1.08998 * 109.47606 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46982 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46956 * 299.99984 * 3 2 1 32 32 H 1.09001 * 109.47443 * 60.00029 * 3 2 1 33 33 H 1.09002 * 109.47011 * 300.00143 * 4 2 1 34 34 H 1.08994 * 109.47249 * 60.00026 * 4 2 1 35 35 H 1.09001 * 109.47037 * 180.02562 * 4 2 1 36 36 H 0.97005 * 119.99846 * 359.72740 * 8 6 5 37 37 H 1.09001 * 113.61299 * 203.66029 * 11 9 8 38 38 H 1.09002 * 113.61342 * 334.56821 * 11 9 8 39 39 H 0.97001 * 120.00178 * 72.52957 * 14 12 11 40 40 H 1.08996 * 109.80800 * 39.14532 * 17 15 14 41 41 H 1.08997 * 109.62139 * 299.23326 * 18 17 15 42 42 H 1.09004 * 109.62114 * 59.79334 * 18 17 15 43 43 H 1.09003 * 109.32914 * 289.31256 * 19 18 17 44 44 H 1.09000 * 109.33411 * 169.83243 * 19 18 17 45 45 H 1.08996 * 109.47446 * 49.97948 * 21 20 19 46 46 H 0.96699 * 114.00299 * 180.02562 * 22 21 20 47 47 H 1.48509 * 109.99870 * 298.67986 * 23 21 20 48 48 H 1.48495 * 110.00043 * 59.99670 * 23 21 20 49 49 H 1.08005 * 119.08213 * 180.42529 * 24 20 19 50 50 H 0.96995 * 120.56414 * 166.65691 * 25 24 20 51 51 H 1.08996 * 113.61919 * 220.02286 * 26 12 11 52 52 H 1.08997 * 113.60971 * 89.11854 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3383 7 8 0.9470 -2.5080 0.5063 8 7 2.0670 -2.6654 2.4172 9 6 1.6684 -4.0649 2.5865 10 1 0.7379 -4.3051 2.0723 11 6 2.8019 -5.0663 2.3087 12 6 3.1722 -4.9360 3.7984 13 1 3.4563 -5.8806 4.2620 14 7 4.1236 -3.8571 4.0762 15 6 5.3997 -4.1498 4.3965 16 8 5.7604 -5.3063 4.4543 17 6 6.3785 -3.0400 4.6818 18 6 6.9252 -2.4761 3.3625 19 6 7.9049 -1.3454 3.6849 20 6 8.8975 -1.7943 4.7190 21 6 10.1944 -1.0378 4.8486 22 8 11.0087 -1.2885 3.7014 23 14 11.0911 -1.6005 6.3816 24 6 8.6853 -2.8149 5.5142 25 7 7.5178 -3.5650 5.4487 26 6 1.7063 -4.5438 4.0474 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9564 0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 2.6297 -2.2376 3.0816 37 1 2.4489 -6.0597 2.0318 38 1 3.5663 -4.6838 1.6323 39 1 3.8352 -2.9322 4.0297 40 1 5.8856 -2.2490 5.2470 41 1 7.4426 -3.2635 2.8144 42 1 6.1029 -2.0877 2.7617 43 1 7.3519 -0.4863 4.0646 44 1 8.4350 -1.0575 2.7771 45 1 9.9867 0.0298 4.9204 46 1 11.8614 -0.8326 3.7171 47 1 10.2680 -1.3163 7.5846 48 1 11.3801 -3.0546 6.2960 49 1 9.4392 -3.0798 6.2408 50 1 7.4554 -4.4208 5.9009 51 1 1.5866 -3.7399 4.7736 52 1 1.0543 -5.3946 4.2450 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941094_15413834.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:28:03 Heat of formation + Delta-G solvation = -92.100156 kcal Electronic energy + Delta-G solvation = -33139.371451 eV Core-core repulsion = 28721.044717 eV Total energy + Delta-G solvation = -4418.326735 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.203 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.22813 -41.58367 -40.46827 -39.26761 -37.93793 -37.35602 -35.45840 -34.86926 -33.84370 -33.40254 -32.86076 -28.38898 -28.31451 -27.91936 -26.86035 -25.97635 -25.40639 -23.98914 -23.25351 -22.03082 -21.32826 -20.79340 -19.44248 -19.24546 -19.13927 -18.20986 -17.80996 -17.59946 -17.25613 -17.21160 -16.69141 -16.25947 -16.07538 -15.99524 -15.54964 -15.35420 -15.32546 -15.23453 -14.78765 -14.54625 -14.44726 -14.29727 -13.98255 -13.82453 -13.59457 -13.37425 -13.35273 -13.18878 -13.14003 -13.06914 -12.93594 -12.88298 -12.55461 -12.54367 -12.33250 -12.03788 -11.96959 -11.67363 -11.62566 -11.43356 -11.42047 -11.16757 -11.00886 -10.36061 -10.24632 -10.11147 -8.61800 -4.91386 1.01037 1.14705 1.26631 1.38578 1.64472 1.66005 1.70990 1.97946 2.44222 2.99509 3.27536 3.39355 3.44294 3.54373 3.61332 3.71966 3.76338 3.79512 3.87257 3.92506 3.97356 3.99801 4.13880 4.29516 4.43976 4.48531 4.49472 4.54529 4.59503 4.61372 4.67161 4.68945 4.70095 4.75098 4.79542 4.85015 4.86694 4.89564 4.92099 4.94722 5.07559 5.08237 5.15798 5.20145 5.25251 5.30663 5.43486 5.46380 5.53944 6.05728 6.24282 6.25534 6.59772 6.92368 7.02778 7.25325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.130 3.870 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.365 6.365 6 C 0.647 3.353 7 O -0.589 6.589 8 N -0.684 5.684 9 C 0.132 3.868 10 H 0.103 0.897 11 C -0.163 4.163 12 C 0.111 3.889 13 H 0.098 0.902 14 N -0.694 5.694 15 C 0.518 3.482 16 O -0.567 6.567 17 C 0.137 3.863 18 C -0.121 4.121 19 C -0.053 4.053 20 C -0.242 4.242 21 C -0.053 4.053 22 O -0.570 6.570 23 Si 0.750 3.250 24 C 0.117 3.883 25 N -0.739 5.739 26 C -0.129 4.129 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.408 0.592 37 H 0.115 0.885 38 H 0.059 0.941 39 H 0.408 0.592 40 H 0.118 0.882 41 H 0.049 0.951 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.397 0.603 47 H -0.290 1.290 48 H -0.304 1.304 49 H 0.118 0.882 50 H 0.405 0.595 51 H 0.097 0.903 52 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.783 7.166 2.265 7.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.093 3.907 3 C -0.195 4.195 4 C -0.239 4.239 5 O -0.280 6.280 6 C 0.401 3.599 7 O -0.479 6.479 8 N -0.345 5.345 9 C 0.027 3.973 10 H 0.121 0.879 11 C -0.203 4.203 12 C 0.006 3.994 13 H 0.116 0.884 14 N -0.348 5.348 15 C 0.305 3.695 16 O -0.445 6.445 17 C 0.028 3.972 18 C -0.160 4.160 19 C -0.090 4.090 20 C -0.252 4.252 21 C -0.164 4.164 22 O -0.379 6.379 23 Si 0.659 3.341 24 C -0.003 4.003 25 N -0.372 5.372 26 C -0.167 4.167 27 H 0.083 0.917 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.080 0.920 36 H 0.246 0.754 37 H 0.133 0.867 38 H 0.078 0.922 39 H 0.246 0.754 40 H 0.136 0.864 41 H 0.068 0.932 42 H 0.120 0.880 43 H 0.106 0.894 44 H 0.094 0.906 45 H 0.102 0.898 46 H 0.247 0.753 47 H -0.217 1.217 48 H -0.233 1.233 49 H 0.135 0.865 50 H 0.241 0.759 51 H 0.116 0.884 52 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.508 5.373 2.313 6.041 hybrid contribution -0.215 -0.267 0.035 0.344 sum -1.723 5.107 2.349 5.879 Atomic orbital electron populations 1.22485 0.94013 1.03742 1.03587 1.22340 0.94446 0.92549 0.81330 1.21897 1.02553 0.90756 1.04304 1.22483 1.01648 1.02217 0.97521 1.86301 1.71474 1.22978 1.47243 1.18301 0.78534 0.80798 0.82287 1.90925 1.41777 1.71088 1.44095 1.44447 1.54868 1.11975 1.23188 1.21991 0.98624 0.77961 0.98702 0.87895 1.24023 0.98476 1.01205 0.96640 1.22111 0.89366 0.91624 0.96299 0.88410 1.45612 1.08971 1.10321 1.69850 1.20797 0.83210 0.89942 0.75588 1.90734 1.78329 1.22732 1.52690 1.21181 0.86772 0.94100 0.95100 1.21826 1.00460 0.98879 0.94803 1.20018 0.94412 0.97151 0.97397 1.20458 0.99069 1.02982 1.02699 1.24491 0.91942 1.02085 0.97911 1.86457 1.33652 1.74857 1.42900 0.94599 0.86591 0.78969 0.73967 1.20316 0.89068 0.93266 0.97674 1.44284 1.11853 1.23572 1.57524 1.23706 0.94494 1.03792 0.94746 0.91719 0.89613 0.91743 0.91042 0.88492 0.90946 0.91884 0.89557 0.91952 0.75402 0.86700 0.92191 0.75356 0.86440 0.93171 0.87960 0.89380 0.90615 0.89779 0.75284 1.21725 1.23287 0.86510 0.75868 0.88417 0.84688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.27 8.37 71.98 0.60 0.33 16 2 C 0.13 0.13 1.13 -10.79 -0.01 0.11 16 3 C -0.14 0.55 8.85 71.98 0.64 1.19 16 4 C -0.18 -0.38 8.37 71.98 0.60 0.23 16 5 O -0.37 -0.89 9.94 -55.43 -0.55 -1.44 16 6 C 0.65 2.54 8.06 129.79 1.05 3.59 16 7 O -0.59 -5.80 11.50 19.82 0.23 -5.57 16 8 N -0.68 1.95 5.13 -567.61 -2.91 -0.96 16 9 C 0.13 -0.49 4.30 45.52 0.20 -0.30 16 10 H 0.10 -0.09 7.50 -2.39 -0.02 -0.10 16 11 C -0.16 0.37 7.70 31.21 0.24 0.61 16 12 C 0.11 -0.41 4.33 45.61 0.20 -0.21 16 13 H 0.10 0.00 7.46 -2.39 -0.02 -0.02 16 14 N -0.69 2.95 5.14 -439.59 -2.26 0.69 16 15 C 0.52 1.18 7.08 87.66 0.62 1.80 16 16 O -0.57 -6.36 15.70 -3.03 -0.05 -6.41 16 17 C 0.14 0.00 3.36 44.32 0.15 0.15 16 18 C -0.12 -0.02 5.47 30.79 0.17 0.14 16 19 C -0.05 -0.04 5.85 29.70 0.17 0.14 16 20 C -0.24 -1.01 5.40 -16.75 -0.09 -1.10 16 21 C -0.05 -0.02 2.80 71.24 0.20 0.18 16 22 O -0.57 -0.87 12.86 -148.98 -1.92 -2.79 16 23 Si 0.75 -0.40 29.91 68.60 2.05 1.66 16 24 C 0.12 0.69 9.62 83.42 0.80 1.49 16 25 N -0.74 -3.50 5.46 -329.00 -1.80 -5.30 16 26 C -0.13 1.10 7.58 31.12 0.24 1.33 16 27 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 28 H 0.09 -0.13 8.14 -2.39 -0.02 -0.15 16 29 H 0.06 0.44 5.87 -2.39 -0.01 0.42 16 30 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 31 H 0.10 -0.65 8.14 -2.39 -0.02 -0.67 16 32 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 33 H 0.06 0.47 5.89 -2.39 -0.01 0.46 16 34 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 35 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 36 H 0.41 -3.21 6.28 -92.70 -0.58 -3.79 16 37 H 0.11 -0.43 8.14 -2.39 -0.02 -0.45 16 38 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 39 H 0.41 -3.94 6.16 -92.71 -0.57 -4.51 16 40 H 0.12 -0.64 8.14 -2.39 -0.02 -0.66 16 41 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 42 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 43 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 44 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 45 H 0.08 -0.31 7.96 -2.39 -0.02 -0.33 16 46 H 0.40 -3.44 8.74 -74.06 -0.65 -4.09 16 47 H -0.29 -1.35 7.11 99.48 0.71 -0.64 16 48 H -0.30 -2.33 6.89 99.48 0.69 -1.64 16 49 H 0.12 0.75 4.34 -2.91 -0.01 0.74 16 50 H 0.41 2.32 8.12 -92.71 -0.75 1.57 16 51 H 0.10 -1.03 8.14 -2.39 -0.02 -1.05 16 52 H 0.14 -1.51 8.14 -2.39 -0.02 -1.53 16 Total: 0.00 -24.83 406.48 -3.00 -27.83 By element: Atomic # 1 Polarization: -15.82 SS G_CDS: -1.57 Total: -17.39 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 5.77 Total: 9.69 kcal Atomic # 7 Polarization: 1.39 SS G_CDS: -6.97 Total: -5.57 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -2.29 Total: -16.21 kcal Atomic # 14 Polarization: -0.40 SS G_CDS: 2.05 Total: 1.66 kcal Total: -24.83 -3.00 -27.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941094_15413834.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.274 kcal (2) G-P(sol) polarization free energy of solvation -24.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds