Wall clock time and date at job start Sun Mar 7 2021 00:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47327 * 2 1 4 4 C 1.53001 * 109.47408 * 240.00034 * 2 1 3 5 5 O 1.45194 * 109.47326 * 119.99753 * 2 1 3 6 6 C 1.34643 * 117.00160 * 60.00130 * 5 2 1 7 7 O 1.21519 * 119.99312 * 0.02562 * 6 5 2 8 8 N 1.34772 * 120.00578 * 179.97438 * 6 5 2 9 9 C 1.46499 * 120.00272 * 179.97438 * 8 6 5 10 10 H 1.09001 * 112.84471 * 29.10220 * 9 8 6 11 11 C 1.53779 * 113.61558 * 160.29909 * 9 8 6 12 12 C 1.53780 * 87.07994 * 89.11999 * 11 9 8 13 13 H 1.08999 * 113.61536 * 140.06731 * 12 11 9 14 14 N 1.46499 * 113.61298 * 270.88438 * 12 11 9 15 15 C 1.34778 * 119.99955 * 199.34924 * 14 12 11 16 16 O 1.21285 * 120.00116 * 0.26919 * 15 14 12 17 17 C 1.50703 * 119.99944 * 180.27718 * 15 14 12 18 18 C 1.53043 * 109.32842 * 144.34867 * 17 15 14 19 19 C 1.53541 * 108.56019 * 169.82734 * 18 17 15 20 20 N 1.47033 * 107.66187 * 299.04982 * 19 18 17 21 21 C 1.38928 * 118.87965 * 43.66542 * 20 19 18 22 22 C 1.31116 * 121.84775 * 346.68032 * 21 20 19 23 23 C 1.50703 * 118.54526 * 180.42952 * 22 21 20 24 24 O 1.42901 * 109.46988 * 102.13284 * 23 22 21 25 25 Si 1.86306 * 109.46836 * 342.13730 * 23 22 21 26 26 C 1.53778 * 87.08185 * 25.43230 * 12 11 9 27 27 H 1.08998 * 109.47116 * 299.99999 * 1 2 3 28 28 H 1.09001 * 109.46617 * 60.00369 * 1 2 3 29 29 H 1.09003 * 109.47022 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47381 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46648 * 300.00124 * 3 2 1 32 32 H 1.08998 * 109.47022 * 59.99943 * 3 2 1 33 33 H 1.09003 * 109.47152 * 300.00072 * 4 2 1 34 34 H 1.09000 * 109.47142 * 59.99524 * 4 2 1 35 35 H 1.09002 * 109.47319 * 179.97438 * 4 2 1 36 36 H 0.96995 * 119.99710 * 0.02562 * 8 6 5 37 37 H 1.09000 * 113.61492 * 334.56900 * 11 9 8 38 38 H 1.08998 * 113.69109 * 203.67741 * 11 9 8 39 39 H 0.97001 * 120.00164 * 19.61994 * 14 12 11 40 40 H 1.08994 * 109.32789 * 24.69354 * 17 15 14 41 41 H 1.08995 * 109.62299 * 289.55135 * 18 17 15 42 42 H 1.08996 * 109.62435 * 50.10615 * 18 17 15 43 43 H 1.09002 * 109.82055 * 58.59066 * 19 18 17 44 44 H 1.09002 * 109.82327 * 179.51171 * 19 18 17 45 45 H 0.96992 * 120.55794 * 223.64388 * 20 19 18 46 46 H 1.07994 * 119.07147 * 166.68990 * 21 20 19 47 47 H 1.08994 * 109.47167 * 222.14125 * 23 22 21 48 48 H 0.96698 * 113.99701 * 179.97438 * 24 23 22 49 49 H 1.48496 * 109.99909 * 60.00107 * 25 23 22 50 50 H 1.48505 * 109.99804 * 181.31784 * 25 23 22 51 51 H 1.09002 * 113.61322 * 89.11628 * 26 12 11 52 52 H 1.09001 * 113.61510 * 220.01767 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1855 6 6 1.6523 -1.9723 1.3384 7 8 0.9516 -2.5097 0.5035 8 7 2.0681 -2.6657 2.4166 9 6 1.6740 -4.0668 2.5832 10 1 1.5099 -4.5760 1.6335 11 6 2.5746 -4.8488 3.5539 12 6 1.6267 -4.3935 4.6760 13 1 1.4244 -5.1665 5.4172 14 7 2.0033 -3.1123 5.2785 15 6 1.5299 -2.7743 6.4942 16 8 0.7959 -3.5328 7.0916 17 6 1.9124 -1.4536 7.1113 18 6 0.7245 -0.9013 7.9026 19 6 1.2036 0.3019 8.7274 20 7 2.2441 -0.1757 9.6500 21 6 3.2162 -1.0459 9.1726 22 6 3.0948 -1.6516 8.0161 23 6 4.1901 -2.5881 7.5752 24 8 3.7752 -3.9392 7.7862 25 14 5.7319 -2.2501 8.5650 26 6 0.5368 -4.2705 3.5981 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7208 -1.2494 36 1 2.6277 -2.2368 3.0828 37 1 3.5815 -4.4405 3.6404 38 1 2.5675 -5.9259 3.3867 39 1 2.5903 -2.5056 4.8007 40 1 2.1786 -0.7504 6.3223 41 1 -0.0586 -0.5844 7.2138 42 1 0.3388 -1.6721 8.5697 43 1 1.6175 1.0625 8.0653 44 1 0.3701 0.7174 9.2935 45 1 2.2518 0.1122 10.5762 46 1 4.0964 -1.2287 9.7711 47 1 4.3968 -2.4326 6.5164 48 1 4.4326 -4.5980 7.5237 49 1 5.4633 -2.4587 10.0105 50 1 6.8290 -3.1457 8.1179 51 1 -0.0284 -5.1893 3.4419 52 1 -0.1014 -3.3953 3.7203 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941094_15608500.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:28:06 Heat of formation + Delta-G solvation = -91.385746 kcal Electronic energy + Delta-G solvation = -34038.853856 eV Core-core repulsion = 29620.558101 eV Total energy + Delta-G solvation = -4418.295755 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.203 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.13462 -41.44805 -40.35893 -38.88786 -37.85245 -37.57645 -35.39597 -34.61900 -33.83140 -32.99220 -32.81892 -28.36795 -28.28748 -27.46307 -26.82096 -26.33600 -25.36668 -23.48455 -23.06421 -21.84918 -21.22492 -20.67883 -19.30251 -19.05989 -18.72081 -18.37126 -17.94160 -17.59082 -17.21807 -17.03710 -16.67051 -16.28829 -16.18047 -15.58867 -15.52760 -15.33612 -15.08119 -15.01034 -14.66044 -14.51517 -14.38206 -14.07084 -13.79993 -13.79335 -13.44447 -13.34369 -13.26520 -13.10789 -13.05531 -12.94663 -12.89797 -12.85484 -12.52427 -12.35707 -12.29846 -11.86117 -11.84630 -11.65974 -11.58570 -11.39103 -11.27473 -11.13445 -10.69861 -10.27379 -10.25227 -9.99899 -8.42476 -4.88701 1.06620 1.24928 1.38713 1.61573 1.71025 1.82803 1.98913 2.19195 2.66726 3.07057 3.37395 3.49323 3.57064 3.73483 3.74703 3.79584 3.82931 3.92764 3.95025 4.01861 4.06219 4.19083 4.29595 4.40279 4.47340 4.54497 4.57649 4.61461 4.64688 4.65891 4.73059 4.75749 4.77274 4.80674 4.82285 4.86543 4.88476 4.89181 4.93955 4.98132 5.12995 5.20336 5.27397 5.27974 5.28537 5.36612 5.49115 5.56877 5.64301 6.31219 6.34659 6.55408 6.71755 6.94355 7.29583 7.36803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.130 3.870 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.365 6.365 6 C 0.647 3.353 7 O -0.591 6.591 8 N -0.681 5.681 9 C 0.136 3.864 10 H 0.100 0.900 11 C -0.126 4.126 12 C 0.120 3.880 13 H 0.083 0.917 14 N -0.700 5.700 15 C 0.539 3.461 16 O -0.579 6.579 17 C -0.039 4.039 18 C -0.127 4.127 19 C 0.124 3.876 20 N -0.747 5.747 21 C 0.152 3.848 22 C -0.248 4.248 23 C -0.062 4.062 24 O -0.556 6.556 25 Si 0.756 3.244 26 C -0.166 4.166 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.409 0.591 37 H 0.099 0.901 38 H 0.131 0.869 39 H 0.403 0.597 40 H 0.114 0.886 41 H 0.082 0.918 42 H 0.048 0.952 43 H 0.082 0.918 44 H 0.096 0.904 45 H 0.412 0.588 46 H 0.139 0.861 47 H 0.085 0.915 48 H 0.381 0.619 49 H -0.305 1.305 50 H -0.296 1.296 51 H 0.108 0.892 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.436 6.985 -1.381 8.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.093 3.907 3 C -0.195 4.195 4 C -0.239 4.239 5 O -0.279 6.279 6 C 0.401 3.599 7 O -0.481 6.481 8 N -0.342 5.342 9 C 0.032 3.968 10 H 0.118 0.882 11 C -0.165 4.165 12 C 0.014 3.986 13 H 0.102 0.898 14 N -0.353 5.353 15 C 0.327 3.673 16 O -0.458 6.458 17 C -0.060 4.060 18 C -0.166 4.166 19 C 0.000 4.000 20 N -0.377 5.377 21 C 0.029 3.971 22 C -0.259 4.259 23 C -0.172 4.172 24 O -0.364 6.364 25 Si 0.664 3.336 26 C -0.206 4.206 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.247 0.753 37 H 0.117 0.883 38 H 0.149 0.851 39 H 0.240 0.760 40 H 0.132 0.868 41 H 0.100 0.900 42 H 0.067 0.933 43 H 0.100 0.900 44 H 0.115 0.885 45 H 0.248 0.752 46 H 0.156 0.844 47 H 0.102 0.898 48 H 0.230 0.770 49 H -0.234 1.234 50 H -0.223 1.223 51 H 0.126 0.874 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.537 6.313 -0.774 7.813 hybrid contribution -0.017 -1.176 0.217 1.196 sum 4.520 5.137 -0.557 6.865 Atomic orbital electron populations 1.22487 0.94344 1.03582 1.03486 1.22333 0.94203 0.92655 0.81464 1.21894 1.02627 0.90675 1.04263 1.22487 1.01799 1.02220 0.97354 1.86302 1.71449 1.22950 1.47246 1.18298 0.78516 0.80884 0.82241 1.90924 1.41944 1.70924 1.44313 1.44405 1.54878 1.11933 1.22985 1.21919 0.96065 0.79364 0.99487 0.88199 1.23641 0.98634 1.02686 0.91495 1.21852 0.95992 0.86469 0.94289 0.89833 1.45649 1.51053 1.20093 1.18517 1.20721 0.78089 0.88331 0.80141 1.90660 1.38583 1.53911 1.62600 1.19776 0.94671 0.93482 0.98052 1.21776 0.96619 0.98690 0.99539 1.21699 0.91003 0.94595 0.92738 1.44654 1.28770 1.50874 1.13432 1.20682 0.92295 0.90326 0.93834 1.19517 0.99200 1.06731 1.00454 1.24745 1.04091 0.82618 1.05766 1.86733 1.45853 1.15926 1.87931 0.94540 0.73523 0.89879 0.75616 1.23968 0.97414 1.03067 0.96145 0.91933 0.89567 0.91977 0.90878 0.88518 0.91002 0.91840 0.89624 0.91666 0.75266 0.88293 0.85098 0.75975 0.86835 0.89953 0.93322 0.89959 0.88545 0.75248 0.84405 0.89752 0.77039 1.23356 1.22343 0.87371 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.45 8.37 71.98 0.60 0.15 16 2 C 0.13 0.17 1.13 -10.79 -0.01 0.16 16 3 C -0.14 0.55 8.85 71.98 0.64 1.18 16 4 C -0.18 -0.34 8.37 71.98 0.60 0.26 16 5 O -0.36 -1.12 9.94 -55.52 -0.55 -1.67 16 6 C 0.65 3.20 8.06 129.79 1.05 4.25 16 7 O -0.59 -6.47 11.55 19.78 0.23 -6.24 16 8 N -0.68 1.00 5.09 -567.61 -2.89 -1.89 16 9 C 0.14 -0.25 4.25 45.52 0.19 -0.05 16 10 H 0.10 0.08 7.59 -2.39 -0.02 0.06 16 11 C -0.13 0.82 7.54 31.12 0.23 1.06 16 12 C 0.12 -0.04 4.25 45.52 0.19 0.15 16 13 H 0.08 0.41 7.60 -2.39 -0.02 0.39 16 14 N -0.70 0.71 5.08 -440.04 -2.23 -1.52 16 15 C 0.54 3.21 4.95 87.66 0.43 3.65 16 16 O -0.58 -9.64 15.75 -3.04 -0.05 -9.68 16 17 C -0.04 -0.03 2.69 -12.43 -0.03 -0.06 16 18 C -0.13 -0.20 5.31 30.79 0.16 -0.03 16 19 C 0.12 -0.53 7.16 86.46 0.62 0.08 16 20 N -0.75 2.11 5.83 -345.89 -2.02 0.09 16 21 C 0.15 -0.02 9.61 83.41 0.80 0.78 16 22 C -0.25 -0.22 5.05 -16.76 -0.08 -0.30 16 23 C -0.06 0.08 2.21 71.24 0.16 0.24 16 24 O -0.56 -2.33 11.66 -148.98 -1.74 -4.07 16 25 Si 0.76 -1.88 30.22 68.60 2.07 0.19 16 26 C -0.17 -0.14 7.68 31.12 0.24 0.10 16 27 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 28 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 29 H 0.06 0.51 5.88 -2.39 -0.01 0.50 16 30 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 31 H 0.10 -0.65 8.14 -2.39 -0.02 -0.67 16 32 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 33 H 0.06 0.47 5.88 -2.39 -0.01 0.45 16 34 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 35 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 36 H 0.41 -2.63 6.45 -92.71 -0.60 -3.23 16 37 H 0.10 -0.93 8.14 -2.39 -0.02 -0.95 16 38 H 0.13 -1.18 8.14 -2.39 -0.02 -1.20 16 39 H 0.40 -2.73 6.31 -92.71 -0.59 -3.31 16 40 H 0.11 -0.61 8.10 -2.39 -0.02 -0.63 16 41 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 42 H 0.05 0.45 7.50 -2.39 -0.02 0.43 16 43 H 0.08 -0.60 8.14 -2.39 -0.02 -0.62 16 44 H 0.10 -0.67 8.14 -2.39 -0.02 -0.69 16 45 H 0.41 -2.58 8.96 -92.71 -0.83 -3.41 16 46 H 0.14 -0.22 4.43 -2.91 -0.01 -0.23 16 47 H 0.08 -0.55 7.96 -2.39 -0.02 -0.57 16 48 H 0.38 -1.04 8.74 -74.06 -0.65 -1.69 16 49 H -0.30 -1.50 6.64 99.48 0.66 -0.84 16 50 H -0.30 -0.75 7.11 99.48 0.71 -0.04 16 51 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 52 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 Total: 0.00 -26.93 403.74 -3.08 -30.02 By element: Atomic # 1 Polarization: -15.12 SS G_CDS: -1.70 Total: -16.82 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 5.79 Total: 11.60 kcal Atomic # 7 Polarization: 3.82 SS G_CDS: -7.14 Total: -3.32 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -2.11 Total: -21.66 kcal Atomic # 14 Polarization: -1.88 SS G_CDS: 2.07 Total: 0.19 kcal Total: -26.93 -3.08 -30.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941094_15608500.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.370 kcal (2) G-P(sol) polarization free energy of solvation -26.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds