Wall clock time and date at job start Sun Mar 7 2021 00:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47240 * 2 1 4 4 C 1.52993 * 109.47037 * 239.99874 * 2 1 3 5 5 O 1.45201 * 109.46733 * 119.99924 * 2 1 3 6 6 C 1.34634 * 116.99885 * 60.00116 * 5 2 1 7 7 O 1.21512 * 120.00320 * 359.97438 * 6 5 2 8 8 N 1.34780 * 119.99748 * 179.97438 * 6 5 2 9 9 C 1.46502 * 120.00032 * 179.97438 * 8 6 5 10 10 H 1.08996 * 112.84808 * 313.97950 * 9 8 6 11 11 C 1.53779 * 113.61200 * 85.17541 * 9 8 6 12 12 C 1.53777 * 87.08325 * 89.20063 * 11 9 8 13 13 H 1.08998 * 113.61710 * 140.06106 * 12 11 9 14 14 N 1.46498 * 113.61346 * 270.88058 * 12 11 9 15 15 C 1.34783 * 120.00072 * 201.86144 * 14 12 11 16 16 O 1.21287 * 119.99468 * 0.02562 * 15 14 12 17 17 C 1.50692 * 120.00163 * 180.02562 * 15 14 12 18 18 O 1.42897 * 109.47298 * 180.02562 * 17 15 14 19 19 C 1.35897 * 117.00259 * 179.97438 * 18 17 15 20 20 C 1.38707 * 120.05686 * 180.02562 * 19 18 17 21 21 C 1.50700 * 120.03094 * 359.95375 * 20 19 18 22 22 O 1.42900 * 109.47131 * 285.00579 * 21 20 19 23 23 Si 1.86295 * 109.47248 * 164.99963 * 21 20 19 24 24 C 1.38175 * 119.94404 * 179.97438 * 20 19 18 25 25 C 1.38239 * 120.05487 * 359.97438 * 24 20 19 26 26 C 1.38289 * 120.11215 * 359.75192 * 25 24 20 27 27 C 1.38125 * 120.05388 * 0.50835 * 26 25 24 28 28 C 1.53773 * 113.69047 * 182.70833 * 9 8 6 29 29 H 1.08998 * 109.47030 * 300.00330 * 1 2 3 30 30 H 1.09002 * 109.46979 * 59.99900 * 1 2 3 31 31 H 1.08994 * 109.47415 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47014 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.46758 * 300.00107 * 3 2 1 34 34 H 1.08997 * 109.46854 * 59.99853 * 3 2 1 35 35 H 1.08997 * 109.47432 * 300.00056 * 4 2 1 36 36 H 1.09003 * 109.47566 * 60.00359 * 4 2 1 37 37 H 1.08997 * 109.47508 * 179.97438 * 4 2 1 38 38 H 0.96994 * 120.00059 * 359.97438 * 8 6 5 39 39 H 1.09000 * 113.61847 * 334.64902 * 11 9 8 40 40 H 1.09007 * 113.68841 * 203.76019 * 11 9 8 41 41 H 0.96995 * 119.99971 * 21.87037 * 14 12 11 42 42 H 1.08997 * 109.46852 * 60.00069 * 17 15 14 43 43 H 1.09003 * 109.47076 * 300.00421 * 17 15 14 44 44 H 1.09002 * 109.46419 * 44.99939 * 21 20 19 45 45 H 0.96698 * 113.99678 * 179.97438 * 22 21 20 46 46 H 1.48497 * 110.00213 * 298.68234 * 23 21 20 47 47 H 1.48506 * 109.99882 * 60.00541 * 23 21 20 48 48 H 1.08001 * 119.97320 * 179.97438 * 24 20 19 49 49 H 1.08003 * 119.94782 * 179.97438 * 25 24 20 50 50 H 1.07999 * 119.97281 * 180.27341 * 26 25 24 51 51 H 1.07999 * 120.02564 * 179.77060 * 27 26 25 52 52 H 1.09001 * 113.61417 * 156.31983 * 28 9 8 53 53 H 1.08999 * 113.61485 * 25.42237 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3383 7 8 0.9508 -2.5094 0.5040 8 7 2.0679 -2.6657 2.4167 9 6 1.6738 -4.0668 2.5833 10 1 0.6133 -4.2335 2.3945 11 6 2.5932 -5.0568 1.8489 12 6 3.4465 -5.0915 3.1278 13 1 3.8182 -6.0851 3.3779 14 7 4.4931 -4.0670 3.1629 15 6 5.5683 -4.2291 3.9593 16 8 5.6695 -5.2234 4.6464 17 6 6.6447 -3.1750 3.9959 18 8 7.6706 -3.5733 4.9073 19 6 8.7238 -2.7279 5.0585 20 6 9.7558 -3.0521 5.9268 21 6 9.7100 -4.3421 6.7045 22 8 8.7655 -4.2226 7.7701 23 14 11.3969 -4.7038 7.4073 24 6 10.8258 -2.1910 6.0784 25 6 10.8685 -1.0076 5.3652 26 6 9.8436 -0.6847 4.4947 27 6 8.7693 -1.5396 4.3437 28 6 2.1727 -4.6974 3.8940 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1299 -0.7209 -1.2495 38 1 2.6280 -2.2370 3.0825 39 1 3.1080 -4.6216 0.9922 40 1 2.1155 -6.0087 1.6168 41 1 4.4122 -3.2720 2.6132 42 1 6.2150 -2.2283 4.3231 43 1 7.0704 -3.0558 2.9995 44 1 9.4101 -5.1547 6.0427 45 1 8.6832 -5.0180 8.3138 46 1 12.3821 -4.8620 6.3076 47 1 11.8171 -3.6032 8.3114 48 1 11.6294 -2.4428 6.7546 49 1 11.7055 -0.3356 5.4854 50 1 9.8815 0.2383 3.9354 51 1 7.9673 -1.2852 3.6665 52 1 1.5788 -5.5505 4.2219 53 1 2.3480 -3.9720 4.6885 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941094_2989392.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:28:12 Heat of formation + Delta-G solvation = -115.717176 kcal Electronic energy + Delta-G solvation = -35658.988504 eV Core-core repulsion = 30885.466716 eV Total energy + Delta-G solvation = -4773.521789 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.192 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.17471 -41.66814 -41.08692 -39.80055 -38.49119 -37.84172 -37.49405 -35.44207 -34.78690 -33.63305 -32.95397 -31.38975 -29.53906 -28.37773 -28.31068 -26.88319 -26.69625 -25.94310 -24.04362 -23.22675 -22.56664 -21.83579 -21.12249 -20.71210 -19.45721 -19.23884 -18.44402 -18.39430 -17.68244 -17.52055 -17.40727 -17.22585 -16.95235 -16.81534 -16.30143 -16.23751 -15.75517 -15.62871 -15.48584 -15.37561 -15.24998 -15.05610 -14.77355 -14.46348 -14.10924 -13.86016 -13.76098 -13.63324 -13.48038 -13.36037 -13.13587 -13.08071 -12.99702 -12.91413 -12.87662 -12.75089 -12.58299 -12.32147 -12.24105 -12.09437 -12.02664 -11.83091 -11.51727 -11.40134 -11.13624 -11.08283 -10.39089 -10.26672 -10.15906 -10.11757 -9.34477 -4.97294 0.07616 0.27087 1.04987 1.27473 1.34408 1.37987 1.60780 1.70746 1.89816 2.47091 2.54406 3.05183 3.28775 3.38480 3.45407 3.51818 3.67123 3.72400 3.73433 3.78690 3.83390 3.91644 3.93249 3.99060 4.04284 4.05630 4.15070 4.21483 4.39408 4.47687 4.52879 4.56869 4.60490 4.65494 4.70659 4.73293 4.75981 4.80054 4.84419 4.85927 4.87077 4.92112 4.93687 5.08384 5.14515 5.19647 5.22429 5.26356 5.31871 5.36268 5.46621 5.56523 5.60396 6.14879 6.29680 6.33851 6.86937 7.00498 7.28865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.130 3.870 3 C -0.139 4.139 4 C -0.180 4.180 5 O -0.367 6.367 6 C 0.647 3.353 7 O -0.586 6.586 8 N -0.688 5.688 9 C 0.136 3.864 10 H 0.096 0.904 11 C -0.145 4.145 12 C 0.115 3.885 13 H 0.095 0.905 14 N -0.697 5.697 15 C 0.520 3.480 16 O -0.557 6.557 17 C 0.032 3.968 18 O -0.305 6.305 19 C 0.133 3.867 20 C -0.135 4.135 21 C -0.078 4.078 22 O -0.562 6.562 23 Si 0.780 3.220 24 C -0.105 4.105 25 C -0.158 4.158 26 C -0.073 4.073 27 C -0.208 4.208 28 C -0.140 4.140 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.413 0.587 39 H 0.071 0.929 40 H 0.123 0.877 41 H 0.412 0.588 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.066 0.934 45 H 0.397 0.603 46 H -0.287 1.287 47 H -0.282 1.282 48 H 0.125 0.875 49 H 0.148 0.852 50 H 0.161 0.839 51 H 0.163 0.837 52 H 0.128 0.872 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.351 3.177 -2.095 3.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.094 3.906 3 C -0.196 4.196 4 C -0.237 4.237 5 O -0.282 6.282 6 C 0.400 3.600 7 O -0.476 6.476 8 N -0.349 5.349 9 C 0.032 3.968 10 H 0.114 0.886 11 C -0.184 4.184 12 C 0.009 3.991 13 H 0.113 0.887 14 N -0.351 5.351 15 C 0.306 3.694 16 O -0.434 6.434 17 C -0.046 4.046 18 O -0.217 6.217 19 C 0.088 3.912 20 C -0.136 4.136 21 C -0.186 4.186 22 O -0.371 6.371 23 Si 0.684 3.316 24 C -0.122 4.122 25 C -0.176 4.176 26 C -0.091 4.091 27 C -0.226 4.226 28 C -0.179 4.179 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.251 0.749 39 H 0.090 0.910 40 H 0.141 0.859 41 H 0.249 0.751 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.084 0.916 45 H 0.247 0.753 46 H -0.214 1.214 47 H -0.209 1.209 48 H 0.142 0.858 49 H 0.166 0.834 50 H 0.178 0.822 51 H 0.180 0.820 52 H 0.146 0.854 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.071 2.933 -2.162 3.644 hybrid contribution -0.287 0.794 -0.527 0.995 sum -0.216 3.726 -2.689 4.600 Atomic orbital electron populations 1.22488 0.94280 1.03725 1.03416 1.22322 0.94272 0.92524 0.81507 1.21896 1.02621 0.90904 1.04134 1.22473 1.01803 1.02267 0.97187 1.86305 1.71472 1.23131 1.47268 1.18275 0.78637 0.80704 0.82351 1.90933 1.41653 1.70973 1.44011 1.44502 1.55313 1.11783 1.23289 1.21917 0.99504 0.77913 0.97459 0.88630 1.23758 0.96937 1.01447 0.96280 1.22014 0.87008 0.92473 0.97573 0.88660 1.45498 1.20306 1.24485 1.44859 1.20371 0.82710 0.87005 0.79329 1.90769 1.78349 1.31539 1.42779 1.22745 0.87882 0.97914 0.96036 1.86159 1.29561 1.44878 1.61121 1.18966 0.87087 0.90055 0.95132 1.19047 0.95445 0.98356 1.00777 1.24826 1.05806 0.96020 0.91979 1.86440 1.63194 1.43285 1.44228 0.94170 0.71462 0.85357 0.80605 1.21019 0.96888 0.94798 0.99523 1.21370 1.01047 0.96914 0.98222 1.21418 0.91897 0.99566 0.96173 1.21669 1.02648 0.94452 1.03827 1.23753 0.96300 1.02223 0.95611 0.92064 0.89650 0.91681 0.90863 0.88556 0.91287 0.91635 0.89764 0.91606 0.74943 0.91009 0.85902 0.75091 0.86014 0.86146 0.91630 0.75301 1.21374 1.20897 0.85776 0.83434 0.82152 0.81992 0.85377 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.20 8.37 71.98 0.60 0.40 16 2 C 0.13 -0.02 1.13 -10.79 -0.01 -0.03 16 3 C -0.14 0.65 8.85 71.98 0.64 1.29 16 4 C -0.18 -0.01 8.37 71.98 0.60 0.59 16 5 O -0.37 -0.46 9.94 -55.43 -0.55 -1.01 16 6 C 0.65 1.56 8.06 129.79 1.05 2.60 16 7 O -0.59 -4.73 11.82 19.80 0.23 -4.50 16 8 N -0.69 2.50 4.35 -567.62 -2.47 0.03 16 9 C 0.14 -0.58 3.99 45.51 0.18 -0.40 16 10 H 0.10 -0.21 8.05 -2.39 -0.02 -0.23 16 11 C -0.15 0.67 7.61 31.12 0.24 0.91 16 12 C 0.11 -0.38 4.28 45.52 0.19 -0.18 16 13 H 0.10 0.05 7.54 -2.39 -0.02 0.03 16 14 N -0.70 2.77 4.96 -440.05 -2.18 0.59 16 15 C 0.52 1.35 7.91 87.65 0.69 2.04 16 16 O -0.56 -7.26 16.14 15.99 0.26 -7.01 16 17 C 0.03 -0.05 5.22 71.23 0.37 0.32 16 18 O -0.30 -2.47 9.00 -73.35 -0.66 -3.13 16 19 C 0.13 0.96 6.66 22.51 0.15 1.11 16 20 C -0.14 -1.26 5.30 -19.77 -0.10 -1.36 16 21 C -0.08 -0.54 2.37 71.24 0.17 -0.37 16 22 O -0.56 -4.36 12.86 -148.98 -1.92 -6.27 16 23 Si 0.78 1.53 30.20 68.60 2.07 3.61 16 24 C -0.10 -0.75 8.66 22.25 0.19 -0.56 16 25 C -0.16 -0.42 10.04 22.28 0.22 -0.20 16 26 C -0.07 0.02 10.04 22.26 0.22 0.24 16 27 C -0.21 -0.15 9.04 22.37 0.20 0.05 16 28 C -0.14 0.83 7.58 31.12 0.24 1.06 16 29 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 30 H 0.08 -0.16 8.14 -2.39 -0.02 -0.17 16 31 H 0.06 0.41 5.88 -2.39 -0.01 0.39 16 32 H 0.07 -0.41 8.14 -2.39 -0.02 -0.43 16 33 H 0.10 -0.70 8.14 -2.39 -0.02 -0.72 16 34 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 35 H 0.06 0.34 5.88 -2.39 -0.01 0.33 16 36 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 37 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 38 H 0.41 -3.09 7.94 -92.71 -0.74 -3.83 16 39 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 40 H 0.12 -0.81 8.14 -2.38 -0.02 -0.83 16 41 H 0.41 -3.52 7.19 -92.71 -0.67 -4.19 16 42 H 0.12 -0.90 7.66 -2.39 -0.02 -0.92 16 43 H 0.12 -0.88 7.66 -2.39 -0.02 -0.90 16 44 H 0.07 0.49 7.83 -2.39 -0.02 0.47 16 45 H 0.40 -0.88 8.74 -74.06 -0.65 -1.53 16 46 H -0.29 -1.97 7.11 99.48 0.71 -1.26 16 47 H -0.28 -1.92 6.75 99.48 0.67 -1.25 16 48 H 0.12 0.79 4.90 -2.91 -0.01 0.78 16 49 H 0.15 -0.29 8.06 -2.91 -0.02 -0.31 16 50 H 0.16 -1.08 8.06 -2.91 -0.02 -1.10 16 51 H 0.16 -1.08 6.30 -2.91 -0.02 -1.10 16 52 H 0.13 -1.05 8.14 -2.39 -0.02 -1.07 16 53 H 0.08 -0.43 8.13 -2.39 -0.02 -0.45 16 Total: 0.00 -28.83 427.84 -0.45 -29.29 By element: Atomic # 1 Polarization: -18.04 SS G_CDS: -1.09 Total: -19.12 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 5.85 Total: 7.53 kcal Atomic # 7 Polarization: 5.27 SS G_CDS: -4.65 Total: 0.62 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -2.63 Total: -21.93 kcal Atomic # 14 Polarization: 1.53 SS G_CDS: 2.07 Total: 3.61 kcal Total: -28.83 -0.45 -29.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941094_2989392.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.430 kcal (2) G-P(sol) polarization free energy of solvation -28.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds