Wall clock time and date at job start Sun Mar 7 2021 00:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46989 * 2 1 4 4 C 1.53002 * 109.46943 * 240.00160 * 2 1 3 5 5 O 1.45196 * 109.47120 * 119.99853 * 2 1 3 6 6 C 1.34644 * 116.99750 * 60.00078 * 5 2 1 7 7 O 1.21507 * 119.99930 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99827 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00258 * 179.97438 * 8 6 5 10 10 H 1.09004 * 112.85009 * 334.67148 * 9 8 6 11 11 C 1.53786 * 113.61381 * 105.86479 * 9 8 6 12 12 C 1.54050 * 86.98144 * 89.16531 * 11 9 8 13 13 H 1.09000 * 113.69469 * 139.99320 * 12 11 9 14 14 N 1.46499 * 113.61309 * 270.87874 * 12 11 9 15 15 C 1.34770 * 120.00818 * 252.49498 * 14 12 11 16 16 O 1.21289 * 119.99391 * 0.02562 * 15 14 12 17 17 C 1.50699 * 120.00422 * 179.97438 * 15 14 12 18 18 O 1.42906 * 109.47052 * 180.02562 * 17 15 14 19 19 C 1.35898 * 116.99701 * 180.02562 * 18 17 15 20 20 C 1.38725 * 120.05791 * 359.72509 * 19 18 17 21 21 C 1.38154 * 119.94544 * 179.69915 * 20 19 18 22 22 C 1.38263 * 120.05217 * 0.59620 * 21 20 19 23 23 C 1.50695 * 119.94591 * 179.69885 * 22 21 20 24 24 O 1.42895 * 109.47020 * 119.97657 * 23 22 21 25 25 Si 1.86302 * 109.47018 * 359.97438 * 23 22 21 26 26 C 1.38276 * 120.11243 * 359.68065 * 22 21 20 27 27 C 1.38140 * 120.05179 * 0.02562 * 26 22 21 28 28 C 1.53773 * 113.61768 * 203.47515 * 9 8 6 29 29 H 1.09004 * 109.47306 * 299.99804 * 1 2 3 30 30 H 1.09003 * 109.47378 * 60.00136 * 1 2 3 31 31 H 1.09006 * 109.47255 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47084 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46954 * 299.99569 * 3 2 1 34 34 H 1.08998 * 109.47592 * 60.00181 * 3 2 1 35 35 H 1.09005 * 109.46853 * 299.99576 * 4 2 1 36 36 H 1.08994 * 109.47198 * 59.99893 * 4 2 1 37 37 H 1.08999 * 109.46961 * 179.97438 * 4 2 1 38 38 H 0.96999 * 120.00047 * 0.02562 * 8 6 5 39 39 H 1.09004 * 113.61439 * 203.67013 * 11 9 8 40 40 H 1.09002 * 113.61266 * 334.57214 * 11 9 8 41 41 H 0.97008 * 119.99469 * 72.49673 * 14 12 11 42 42 H 1.08999 * 109.46843 * 299.99834 * 17 15 14 43 43 H 1.08998 * 109.46877 * 60.00271 * 17 15 14 44 44 H 1.08004 * 120.02713 * 359.97438 * 20 19 18 45 45 H 1.08001 * 119.97205 * 180.27384 * 21 20 19 46 46 H 1.08997 * 109.47417 * 239.98222 * 23 22 21 47 47 H 0.96693 * 114.00382 * 300.00013 * 24 23 22 48 48 H 1.48502 * 110.00118 * 179.97438 * 25 23 22 49 49 H 1.48498 * 110.00039 * 301.32074 * 25 23 22 50 50 H 1.07996 * 119.97247 * 179.97438 * 26 22 21 51 51 H 1.08005 * 120.02350 * 180.02562 * 27 26 22 52 52 H 1.09000 * 113.61571 * 25.42974 * 28 9 8 53 53 H 1.09005 * 113.61978 * 156.33665 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9508 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4166 9 6 1.6739 -4.0668 2.5832 10 1 0.7449 -4.3095 2.0672 11 6 2.8114 -5.0638 2.3054 12 6 3.1790 -4.9346 3.7958 13 1 3.4661 -5.8783 4.2596 14 7 4.1261 -3.8524 4.0749 15 6 5.4028 -4.1403 4.3965 16 8 5.7678 -5.2955 4.4544 17 6 6.3773 -3.0270 4.6830 18 8 7.6562 -3.5822 4.9963 19 6 8.6555 -2.7068 5.2824 20 6 8.4117 -1.3413 5.2564 21 6 9.4276 -0.4536 5.5537 22 6 10.6897 -0.9247 5.8649 23 6 11.7979 0.0460 6.1821 24 8 12.2802 -0.1976 7.5050 25 14 11.1484 1.7885 6.0689 26 6 10.9368 -2.2850 5.8859 27 6 9.9227 -3.1769 5.5952 28 6 1.7113 -4.5479 4.0433 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6767 1.9564 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7208 -1.2495 38 1 2.6275 -2.2368 3.0828 39 1 2.4622 -6.0580 2.0264 40 1 3.5754 -4.6777 1.6307 41 1 3.8343 -2.9284 4.0282 42 1 6.4648 -2.3861 3.8056 43 1 6.0190 -2.4392 5.5281 44 1 7.4272 -0.9728 5.0083 45 1 9.2371 0.6094 5.5379 46 1 12.6114 -0.0854 5.4687 47 1 11.6083 -0.0983 8.1932 48 1 12.2316 2.7555 6.3802 49 1 10.6146 2.0441 4.7069 50 1 11.9236 -2.6505 6.1288 51 1 10.1161 -4.2393 5.6122 52 1 1.5879 -3.7455 4.7707 53 1 1.0619 -5.4013 4.2387 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941094_2989410.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:28:16 Heat of formation + Delta-G solvation = -117.742997 kcal Electronic energy + Delta-G solvation = -34906.149514 eV Core-core repulsion = 30132.539879 eV Total energy + Delta-G solvation = -4773.609635 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.192 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.17377 -41.59076 -41.04553 -39.84832 -38.89519 -37.90391 -37.10876 -35.44007 -34.78327 -33.68682 -32.37754 -31.72400 -29.69696 -28.38555 -28.31000 -26.82333 -26.36774 -25.81260 -24.17155 -23.45307 -22.39264 -21.93655 -21.21707 -20.74939 -19.56894 -19.27029 -18.43507 -18.14323 -17.62389 -17.47597 -17.28280 -17.15486 -16.83307 -16.53369 -16.21267 -16.04586 -15.92634 -15.61433 -15.52886 -15.46545 -15.27224 -14.94825 -14.64527 -14.46311 -14.32368 -13.94638 -13.77736 -13.67437 -13.53554 -13.37769 -13.36857 -13.13213 -13.04676 -12.92930 -12.87866 -12.54652 -12.32549 -12.25167 -12.09075 -12.05672 -11.93006 -11.73534 -11.58929 -11.41481 -11.15969 -11.07624 -10.40320 -10.32871 -10.21437 -10.04871 -9.23239 -4.98422 0.26941 0.30287 1.01472 1.34771 1.36016 1.42382 1.65143 1.68697 1.99539 2.50292 2.65436 3.03028 3.32446 3.44279 3.49699 3.56839 3.72377 3.73047 3.77278 3.81215 3.82400 3.92855 3.94890 4.00755 4.04001 4.06897 4.30368 4.41768 4.45365 4.50758 4.52633 4.59778 4.62607 4.65691 4.73127 4.74350 4.75462 4.80646 4.86444 4.87187 4.92614 4.96019 4.96731 5.09264 5.15030 5.21427 5.24711 5.25637 5.31660 5.48301 5.49610 5.55691 5.68926 6.19416 6.28020 6.36490 6.80513 7.01766 7.27314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.130 3.870 3 C -0.138 4.138 4 C -0.182 4.182 5 O -0.365 6.365 6 C 0.647 3.353 7 O -0.590 6.590 8 N -0.682 5.682 9 C 0.131 3.869 10 H 0.102 0.898 11 C -0.165 4.165 12 C 0.113 3.887 13 H 0.097 0.903 14 N -0.695 5.695 15 C 0.517 3.483 16 O -0.565 6.565 17 C 0.034 3.966 18 O -0.319 6.319 19 C 0.121 3.879 20 C -0.199 4.199 21 C -0.076 4.076 22 C -0.161 4.161 23 C -0.074 4.074 24 O -0.559 6.559 25 Si 0.783 3.217 26 C -0.061 4.061 27 C -0.166 4.166 28 C -0.128 4.128 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.409 0.591 39 H 0.114 0.886 40 H 0.059 0.941 41 H 0.410 0.590 42 H 0.123 0.877 43 H 0.133 0.867 44 H 0.166 0.834 45 H 0.154 0.846 46 H 0.102 0.898 47 H 0.395 0.605 48 H -0.304 1.304 49 H -0.281 1.281 50 H 0.132 0.868 51 H 0.126 0.874 52 H 0.100 0.900 53 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.579 6.956 2.797 9.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.094 3.906 3 C -0.195 4.195 4 C -0.239 4.239 5 O -0.280 6.280 6 C 0.400 3.600 7 O -0.480 6.480 8 N -0.344 5.344 9 C 0.027 3.973 10 H 0.120 0.880 11 C -0.205 4.205 12 C 0.007 3.993 13 H 0.115 0.885 14 N -0.350 5.350 15 C 0.304 3.696 16 O -0.443 6.443 17 C -0.044 4.044 18 O -0.232 6.232 19 C 0.075 3.925 20 C -0.218 4.218 21 C -0.093 4.093 22 C -0.161 4.161 23 C -0.184 4.184 24 O -0.367 6.367 25 Si 0.689 3.311 26 C -0.079 4.079 27 C -0.185 4.185 28 C -0.166 4.166 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.248 0.752 39 H 0.132 0.868 40 H 0.078 0.922 41 H 0.249 0.751 42 H 0.141 0.859 43 H 0.151 0.849 44 H 0.183 0.817 45 H 0.171 0.829 46 H 0.119 0.881 47 H 0.245 0.755 48 H -0.233 1.233 49 H -0.207 1.207 50 H 0.150 0.850 51 H 0.144 0.856 52 H 0.119 0.881 53 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.054 6.402 1.666 8.325 hybrid contribution 0.617 -0.288 -0.430 0.805 sum -4.437 6.114 1.236 7.655 Atomic orbital electron populations 1.22484 0.94001 1.03733 1.03607 1.22330 0.94454 0.92539 0.81322 1.21893 1.02514 0.90751 1.04331 1.22488 1.01612 1.02252 0.97560 1.86295 1.71447 1.23024 1.47209 1.18316 0.78532 0.80786 0.82346 1.90928 1.42028 1.71048 1.43994 1.44424 1.55042 1.11767 1.23123 1.21996 0.98586 0.77921 0.98822 0.87997 1.24037 0.98477 1.01232 0.96728 1.22088 0.89424 0.91576 0.96170 0.88532 1.45478 1.08757 1.10429 1.70352 1.20549 0.83259 0.89898 0.75909 1.90780 1.78158 1.23354 1.51970 1.22772 0.81487 0.94644 1.05468 1.86130 1.18417 1.34644 1.84019 1.19197 0.88041 0.89253 0.95968 1.21508 1.02351 0.90788 1.07119 1.21072 0.91470 1.00255 0.96528 1.20364 0.95854 0.94855 1.05053 1.25191 0.97966 1.08399 0.86813 1.86461 1.41182 1.93750 1.15283 0.93751 0.82536 0.71754 0.83045 1.20897 0.98675 0.92397 0.95947 1.20617 0.91163 1.01002 1.05704 1.23701 0.94349 1.03863 0.94692 0.91619 0.89681 0.91773 0.91073 0.88593 0.90818 0.91863 0.89633 0.91992 0.75233 0.86783 0.92189 0.75106 0.85946 0.84939 0.81683 0.82924 0.88056 0.75506 1.23279 1.20738 0.85001 0.85624 0.88135 0.84761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.12 8.37 71.98 0.60 0.49 16 2 C 0.13 0.00 1.13 -10.79 -0.01 -0.01 16 3 C -0.14 0.69 8.85 71.98 0.64 1.32 16 4 C -0.18 -0.25 8.37 71.98 0.60 0.35 16 5 O -0.37 -0.43 9.94 -55.54 -0.55 -0.99 16 6 C 0.65 1.79 8.06 129.79 1.05 2.83 16 7 O -0.59 -5.34 11.50 19.82 0.23 -5.11 16 8 N -0.68 2.98 5.12 -567.61 -2.91 0.07 16 9 C 0.13 -0.64 4.29 45.52 0.20 -0.44 16 10 H 0.10 -0.18 7.50 -2.39 -0.02 -0.19 16 11 C -0.16 0.51 7.70 31.21 0.24 0.75 16 12 C 0.11 -0.53 4.33 45.61 0.20 -0.33 16 13 H 0.10 -0.05 7.46 -2.39 -0.02 -0.06 16 14 N -0.69 4.33 5.13 -439.61 -2.26 2.07 16 15 C 0.52 0.44 7.91 87.66 0.69 1.14 16 16 O -0.57 -7.11 16.10 15.98 0.26 -6.86 16 17 C 0.03 -0.16 5.22 71.24 0.37 0.21 16 18 O -0.32 -1.49 9.67 -73.37 -0.71 -2.20 16 19 C 0.12 0.29 6.69 22.50 0.15 0.44 16 20 C -0.20 0.73 9.04 22.37 0.20 0.94 16 21 C -0.08 0.28 8.66 22.26 0.19 0.47 16 22 C -0.16 0.06 5.39 -19.85 -0.11 -0.05 16 23 C -0.07 0.07 2.82 71.23 0.20 0.27 16 24 O -0.56 -0.11 12.77 -148.98 -1.90 -2.01 16 25 Si 0.78 -2.96 29.78 68.60 2.04 -0.92 16 26 C -0.06 -0.15 9.60 22.26 0.21 0.06 16 27 C -0.17 -0.72 9.99 22.36 0.22 -0.50 16 28 C -0.13 1.24 7.58 31.12 0.24 1.48 16 29 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 30 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 31 H 0.06 0.39 5.88 -2.38 -0.01 0.37 16 32 H 0.07 -0.38 8.14 -2.39 -0.02 -0.40 16 33 H 0.10 -0.71 8.14 -2.39 -0.02 -0.73 16 34 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 35 H 0.06 0.44 5.88 -2.38 -0.01 0.42 16 36 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 37 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.41 -4.14 6.28 -92.71 -0.58 -4.72 16 39 H 0.11 -0.49 8.14 -2.39 -0.02 -0.51 16 40 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 41 H 0.41 -5.29 6.15 -92.70 -0.57 -5.86 16 42 H 0.12 -1.29 7.65 -2.39 -0.02 -1.31 16 43 H 0.13 -1.62 7.67 -2.39 -0.02 -1.64 16 44 H 0.17 -1.86 6.30 -2.91 -0.02 -1.88 16 45 H 0.15 -1.35 4.87 -2.91 -0.01 -1.37 16 46 H 0.10 0.09 7.96 -2.39 -0.02 0.07 16 47 H 0.40 -3.18 8.70 -74.06 -0.64 -3.82 16 48 H -0.30 -1.37 7.11 99.48 0.71 -0.66 16 49 H -0.28 0.02 7.11 99.48 0.71 0.72 16 50 H 0.13 0.25 8.06 -2.91 -0.02 0.23 16 51 H 0.13 0.63 8.06 -2.91 -0.02 0.60 16 52 H 0.10 -1.24 8.14 -2.39 -0.02 -1.26 16 53 H 0.13 -1.63 8.14 -2.38 -0.02 -1.65 16 Total: 0.00 -30.23 426.21 -0.71 -30.94 By element: Atomic # 1 Polarization: -23.64 SS G_CDS: -0.79 Total: -24.44 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 5.89 Total: 9.43 kcal Atomic # 7 Polarization: 7.31 SS G_CDS: -5.17 Total: 2.14 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -2.68 Total: -17.16 kcal Atomic # 14 Polarization: -2.96 SS G_CDS: 2.04 Total: -0.92 kcal Total: -30.23 -0.71 -30.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941094_2989410.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.803 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds