Wall clock time and date at job start Sun Mar 7 2021 00:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53006 * 109.46747 * 2 1 4 4 C 1.52997 * 109.47047 * 239.99713 * 2 1 3 5 5 O 1.45201 * 109.47119 * 119.99769 * 2 1 3 6 6 C 1.34633 * 117.00326 * 60.00216 * 5 2 1 7 7 O 1.21516 * 119.99828 * 359.97438 * 6 5 2 8 8 N 1.34774 * 120.00448 * 179.97438 * 6 5 2 9 9 C 1.46492 * 120.00245 * 179.97438 * 8 6 5 10 10 H 1.09008 * 112.84845 * 336.19587 * 9 8 6 11 11 C 1.53775 * 113.69101 * 107.46785 * 9 8 6 12 12 C 1.53779 * 87.08438 * 139.99340 * 11 9 8 13 13 H 1.09002 * 113.61731 * 89.11293 * 12 11 9 14 14 N 1.46500 * 113.68825 * 220.00754 * 12 11 9 15 15 C 1.34778 * 119.99919 * 254.05902 * 14 12 11 16 16 O 1.21277 * 119.99902 * 0.02562 * 15 14 12 17 17 C 1.50701 * 119.99998 * 180.02562 * 15 14 12 18 18 O 1.42900 * 109.47348 * 180.02562 * 17 15 14 19 19 C 1.35889 * 117.00257 * 180.02562 * 18 17 15 20 20 C 1.38716 * 120.05912 * 179.72486 * 19 18 17 21 21 N 1.48009 * 120.02402 * 0.02562 * 20 19 18 22 22 O 1.21801 * 119.99675 * 179.97438 * 21 20 19 23 23 O 1.21798 * 119.99986 * 0.02562 * 21 20 19 24 24 C 1.38162 * 119.94595 * 179.79172 * 20 19 18 25 25 C 1.38249 * 120.05486 * 0.48349 * 24 20 19 26 26 C 1.50703 * 119.94128 * 179.76746 * 25 24 20 27 27 O 1.42895 * 109.47351 * 299.97834 * 26 25 24 28 28 Si 1.86304 * 109.46911 * 179.97438 * 26 25 24 29 29 C 1.38285 * 120.11291 * 359.74952 * 25 24 20 30 30 C 1.38122 * 120.05414 * 0.02562 * 29 25 24 31 31 C 1.53777 * 113.61596 * 205.00267 * 9 8 6 32 32 H 1.09001 * 109.47008 * 299.99955 * 1 2 3 33 33 H 1.08995 * 109.46935 * 60.00520 * 1 2 3 34 34 H 1.08996 * 109.46729 * 180.02562 * 1 2 3 35 35 H 1.08992 * 109.46829 * 180.02562 * 3 2 1 36 36 H 1.09009 * 109.46617 * 299.99875 * 3 2 1 37 37 H 1.08992 * 109.47199 * 59.99655 * 3 2 1 38 38 H 1.08996 * 109.47315 * 299.99591 * 4 2 1 39 39 H 1.09008 * 109.47128 * 60.00065 * 4 2 1 40 40 H 1.08999 * 109.47092 * 179.97438 * 4 2 1 41 41 H 0.97005 * 119.99589 * 0.02562 * 8 6 5 42 42 H 1.08993 * 113.61636 * 25.43703 * 11 9 8 43 43 H 1.09008 * 113.61006 * 254.53946 * 11 9 8 44 44 H 0.96998 * 119.99853 * 74.06469 * 14 12 11 45 45 H 1.08998 * 109.46903 * 300.00568 * 17 15 14 46 46 H 1.09005 * 109.46573 * 60.00422 * 17 15 14 47 47 H 1.08004 * 119.97251 * 180.22938 * 24 20 19 48 48 H 1.08997 * 109.47118 * 59.98377 * 26 25 24 49 49 H 0.96699 * 114.00051 * 179.97438 * 27 26 25 50 50 H 1.48505 * 109.99924 * 298.68219 * 28 26 25 51 51 H 1.48498 * 109.99864 * 60.00055 * 28 26 25 52 52 H 1.07991 * 119.96970 * 180.02562 * 29 25 24 53 53 H 1.07997 * 120.02994 * 179.97438 * 30 29 25 54 54 H 1.08997 * 113.61941 * 105.38208 * 31 9 8 55 55 H 1.09005 * 113.61136 * 334.48373 * 31 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0141 -0.6844 1.1856 6 6 1.6524 -1.9722 1.3385 7 8 0.9510 -2.5095 0.5041 8 7 2.0682 -2.6656 2.4168 9 6 1.6742 -4.0667 2.5833 10 1 0.7593 -4.3159 2.0456 11 6 2.8204 -5.0635 2.3441 12 6 2.2717 -5.8606 3.5392 13 1 1.5203 -6.6002 3.2629 14 7 3.3147 -6.4074 4.4106 15 6 3.5918 -7.7262 4.3844 16 8 2.9779 -8.4600 3.6391 17 6 4.6643 -8.2888 5.2812 18 8 4.7699 -9.6983 5.0711 19 6 5.6975 -10.3642 5.8079 20 6 5.8498 -11.7348 5.6589 21 7 5.0024 -12.4739 4.6965 22 8 5.1369 -13.6774 4.5657 23 8 4.1712 -11.8785 4.0346 24 6 6.7966 -12.4088 6.4061 25 6 7.5849 -11.7198 7.3090 26 6 8.6131 -12.4583 8.1265 27 8 7.9647 -13.4525 8.9222 28 14 9.5029 -11.2565 9.2378 29 6 7.4317 -10.3541 7.4629 30 6 6.4898 -9.6750 6.7149 31 6 1.6757 -4.5372 4.0474 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 -0.3632 -1.0276 0.0005 35 1 3.1299 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8901 37 1 1.6766 1.9564 0.8899 38 1 1.6768 -1.7489 -1.2491 39 1 1.6767 -0.2075 -2.1393 40 1 3.1300 -0.7209 -1.2494 41 1 2.6278 -2.2366 3.0830 42 1 3.8099 -4.6411 2.5182 43 1 2.7466 -5.5940 1.3946 44 1 3.8058 -5.8204 5.0065 45 1 5.6178 -7.8147 5.0488 46 1 4.4060 -8.0946 6.3222 47 1 6.9181 -13.4754 6.2878 48 1 9.3311 -12.9372 7.4607 49 1 8.5673 -13.9683 9.4752 50 1 10.2078 -10.2359 8.4211 51 1 8.5350 -10.5968 10.1506 52 1 8.0490 -9.8182 8.1686 53 1 6.3702 -8.6085 6.8358 54 1 0.6779 -4.6426 4.4732 55 1 2.3524 -3.9708 4.6873 There are 79 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 79 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941094_4549638.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:28:52 Heat of formation + Delta-G solvation = -121.239886 kcal Electronic energy + Delta-G solvation = -40421.825789 eV Core-core repulsion = 34817.048082 eV Total energy + Delta-G solvation = -5604.777707 eV No. of doubly occupied orbitals = 79 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 424.186 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -43.37742 -42.02347 -41.83265 -41.10772 -40.00460 -39.21100 -37.95374 -37.65007 -37.39433 -35.64935 -34.97488 -33.72547 -33.46174 -32.42712 -30.01192 -28.40474 -28.32951 -27.91508 -26.84026 -26.69211 -25.81631 -24.24237 -23.22196 -22.73368 -21.82218 -21.48910 -20.84494 -20.53240 -19.86425 -19.31372 -19.19331 -18.74119 -18.54207 -18.29225 -18.10527 -17.66363 -17.50457 -17.21783 -17.14352 -16.56040 -16.27929 -16.01878 -15.96489 -15.80428 -15.52291 -15.37301 -15.28672 -14.93826 -14.53089 -14.44417 -14.24800 -14.10720 -13.84597 -13.82978 -13.55177 -13.39554 -13.17971 -13.03796 -12.95888 -12.89817 -12.76706 -12.73239 -12.63041 -12.52874 -12.43778 -12.41480 -12.32954 -12.23083 -12.21360 -12.03602 -11.97347 -11.43041 -11.15133 -11.07588 -10.98241 -10.42931 -10.32481 -10.11403 -9.84910 -4.89258 -1.41320 -0.36266 0.04639 0.25207 1.02362 1.21089 1.27452 1.37472 1.68197 1.69692 1.89846 1.91971 2.26087 2.97498 3.06301 3.13357 3.24211 3.28664 3.42835 3.48053 3.50874 3.57011 3.71061 3.73727 3.77265 3.81620 3.83528 3.91248 3.93291 3.93603 4.13673 4.23576 4.39496 4.40137 4.48947 4.54093 4.57565 4.57838 4.61982 4.69324 4.70755 4.73203 4.80968 4.81833 4.84900 4.91766 4.94965 4.96826 5.09600 5.10504 5.22960 5.23702 5.31716 5.45669 5.56254 5.64231 6.35393 6.37057 6.40704 6.85906 7.10178 7.31148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.128 3.872 3 C -0.137 4.137 4 C -0.181 4.181 5 O -0.367 6.367 6 C 0.642 3.358 7 O -0.596 6.596 8 N -0.684 5.684 9 C 0.138 3.862 10 H 0.102 0.898 11 C -0.162 4.162 12 C 0.125 3.875 13 H 0.097 0.903 14 N -0.692 5.692 15 C 0.510 3.490 16 O -0.564 6.564 17 C 0.022 3.978 18 O -0.288 6.288 19 C 0.194 3.806 20 C -0.101 4.101 21 N 0.034 4.966 22 O -0.191 6.191 23 O -0.173 6.173 24 C 0.001 3.999 25 C -0.117 4.117 26 C -0.088 4.088 27 O -0.568 6.568 28 Si 0.778 3.222 29 C -0.027 4.027 30 C -0.188 4.188 31 C -0.125 4.125 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.421 0.579 42 H 0.108 0.892 43 H 0.056 0.944 44 H 0.425 0.575 45 H 0.143 0.857 46 H 0.143 0.857 47 H 0.161 0.839 48 H 0.098 0.902 49 H 0.407 0.593 50 H -0.270 1.270 51 H -0.281 1.281 52 H 0.163 0.837 53 H 0.204 0.796 54 H 0.095 0.905 55 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.903 9.872 11.593 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.092 3.908 3 C -0.194 4.194 4 C -0.238 4.238 5 O -0.282 6.282 6 C 0.395 3.605 7 O -0.487 6.487 8 N -0.343 5.343 9 C 0.033 3.967 10 H 0.120 0.880 11 C -0.203 4.203 12 C 0.019 3.981 13 H 0.115 0.885 14 N -0.347 5.347 15 C 0.295 3.705 16 O -0.441 6.441 17 C -0.055 4.055 18 O -0.198 6.198 19 C 0.144 3.856 20 C -0.187 4.187 21 N 0.546 4.454 22 O -0.401 6.401 23 O -0.386 6.386 24 C -0.018 4.018 25 C -0.119 4.119 26 C -0.196 4.196 27 O -0.379 6.379 28 Si 0.680 3.320 29 C -0.044 4.044 30 C -0.207 4.207 31 C -0.164 4.164 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.116 0.884 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.259 0.741 42 H 0.127 0.873 43 H 0.075 0.925 44 H 0.264 0.736 45 H 0.161 0.839 46 H 0.161 0.839 47 H 0.178 0.822 48 H 0.116 0.884 49 H 0.259 0.741 50 H -0.196 1.196 51 H -0.208 1.208 52 H 0.180 0.820 53 H 0.221 0.779 54 H 0.113 0.887 55 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.907 10.492 10.840 18.048 hybrid contribution -0.575 -0.454 -0.892 1.154 sum 9.331 10.038 9.949 16.935 Atomic orbital electron populations 1.22481 0.94108 1.03649 1.03573 1.22336 0.94403 0.92607 0.81454 1.21890 1.02492 0.90762 1.04292 1.22479 1.01654 1.02183 0.97509 1.86304 1.71482 1.23222 1.47164 1.18465 0.78584 0.80755 0.82668 1.90924 1.42357 1.71091 1.44351 1.44589 1.54860 1.11828 1.23051 1.22244 0.98435 0.77404 0.98586 0.87974 1.24030 1.00279 0.96990 0.98959 1.22124 0.90542 0.94447 0.90941 0.88529 1.45485 1.39009 1.06906 1.43300 1.20470 0.83862 0.83099 0.83033 1.90860 1.52031 1.59732 1.41454 1.23157 1.01284 0.78435 1.02588 1.86474 1.51930 1.22937 1.58477 1.18855 0.88262 0.88532 0.89934 1.20882 1.03850 0.90618 1.03302 1.43797 1.00253 1.00944 1.00408 1.94496 1.74938 0.97714 1.72950 1.94685 1.29678 1.69778 1.44477 1.20885 0.89003 1.01990 0.89877 1.19694 0.99832 0.94023 0.98306 1.25025 0.96129 0.99308 0.99169 1.86443 1.39180 1.51689 1.60544 0.93432 0.81491 0.77337 0.79697 1.21491 0.94462 0.93247 0.95246 1.21690 0.97762 1.03517 0.97700 1.23698 1.04086 0.93602 0.94974 0.91732 0.89578 0.91909 0.91096 0.88448 0.90991 0.91987 0.89562 0.91891 0.74133 0.87336 0.92549 0.73560 0.83940 0.83932 0.82184 0.88409 0.74075 1.19582 1.20803 0.82003 0.77891 0.88672 0.85272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.55 8.37 71.98 0.60 0.05 16 2 C 0.13 0.31 1.13 -10.79 -0.01 0.30 16 3 C -0.14 0.39 8.85 71.98 0.64 1.03 16 4 C -0.18 -0.62 8.37 71.98 0.60 -0.01 16 5 O -0.37 -1.50 9.94 -55.43 -0.55 -2.05 16 6 C 0.64 3.50 8.06 129.79 1.05 4.55 16 7 O -0.60 -7.18 11.48 19.79 0.23 -6.96 16 8 N -0.68 1.72 5.36 -567.63 -3.04 -1.32 16 9 C 0.14 -0.42 4.24 45.52 0.19 -0.23 16 10 H 0.10 0.22 7.46 -2.38 -0.02 0.20 16 11 C -0.16 0.46 7.68 31.12 0.24 0.70 16 12 C 0.13 -0.52 4.22 45.52 0.19 -0.33 16 13 H 0.10 0.23 7.50 -2.39 -0.02 0.21 16 14 N -0.69 5.31 5.36 -440.04 -2.36 2.95 16 15 C 0.51 0.49 7.91 87.66 0.69 1.18 16 16 O -0.56 -8.54 16.12 16.01 0.26 -8.28 16 17 C 0.02 -0.14 5.22 71.24 0.37 0.23 16 18 O -0.29 -1.77 7.68 -63.28 -0.49 -2.25 16 19 C 0.19 0.67 6.67 22.51 0.15 0.82 16 20 C -0.10 -0.95 6.87 36.47 0.25 -0.70 16 21 N 0.03 0.61 4.45 -46.24 -0.21 0.41 16 22 O -0.19 -3.63 18.45 18.88 0.35 -3.28 16 23 O -0.17 -3.92 17.24 25.61 0.44 -3.48 16 24 C 0.00 0.01 9.11 22.25 0.20 0.21 16 25 C -0.12 0.12 5.42 -19.85 -0.11 0.02 16 26 C -0.09 0.55 2.81 71.24 0.20 0.75 16 27 O -0.57 2.45 12.74 -148.98 -1.90 0.56 16 28 Si 0.78 -7.90 29.78 68.60 2.04 -5.85 16 29 C -0.03 0.14 8.66 22.25 0.19 0.33 16 30 C -0.19 1.15 9.04 22.37 0.20 1.35 16 31 C -0.13 1.23 7.58 31.12 0.24 1.46 16 32 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 34 H 0.06 0.54 5.88 -2.39 -0.01 0.53 16 35 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 36 H 0.10 -0.56 8.14 -2.38 -0.02 -0.58 16 37 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 38 H 0.06 0.57 5.88 -2.39 -0.01 0.56 16 39 H 0.09 0.01 8.14 -2.38 -0.02 0.00 16 40 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 41 H 0.42 -3.65 8.84 -92.70 -0.82 -4.47 16 42 H 0.11 -0.68 8.14 -2.39 -0.02 -0.70 16 43 H 0.06 0.18 8.14 -2.38 -0.02 0.16 16 44 H 0.43 -7.25 8.71 -92.71 -0.81 -8.06 16 45 H 0.14 -2.12 7.66 -2.39 -0.02 -2.14 16 46 H 0.14 -2.11 7.66 -2.38 -0.02 -2.13 16 47 H 0.16 0.74 7.61 -2.91 -0.02 0.72 16 48 H 0.10 -0.94 7.96 -2.39 -0.02 -0.96 16 49 H 0.41 -5.92 8.74 -74.06 -0.65 -6.56 16 50 H -0.27 1.87 7.11 99.48 0.71 2.57 16 51 H -0.28 1.22 7.11 99.48 0.71 1.93 16 52 H 0.16 -1.54 4.87 -2.92 -0.01 -1.55 16 53 H 0.20 -3.35 6.30 -2.91 -0.02 -3.36 16 54 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16 55 H 0.13 -2.09 8.09 -2.38 -0.02 -2.11 16 Total: 0.00 -44.27 457.64 -0.58 -44.85 By element: Atomic # 1 Polarization: -25.74 SS G_CDS: -1.25 Total: -26.99 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: 5.89 Total: 11.71 kcal Atomic # 7 Polarization: 7.65 SS G_CDS: -5.61 Total: 2.04 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -1.66 Total: -25.75 kcal Atomic # 14 Polarization: -7.90 SS G_CDS: 2.04 Total: -5.85 kcal Total: -44.27 -0.58 -44.85 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941094_4549638.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.389 kcal (2) G-P(sol) polarization free energy of solvation -44.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds