Wall clock time and date at job start Sun Mar 7 2021 00:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 C 1.53005 * 109.46522 * 239.99854 * 2 1 3 5 5 O 1.45202 * 109.46910 * 120.00501 * 2 1 3 6 6 C 1.34632 * 117.00378 * 59.99883 * 5 2 1 7 7 O 1.21517 * 119.99807 * 359.97438 * 6 5 2 8 8 N 1.34776 * 120.00139 * 179.97438 * 6 5 2 9 9 C 1.46499 * 120.00226 * 179.97438 * 8 6 5 10 10 H 1.09008 * 112.84610 * 336.19267 * 9 8 6 11 11 C 1.53954 * 113.74343 * 107.39930 * 9 8 6 12 12 C 1.53782 * 87.01856 * 139.94580 * 11 9 8 13 13 H 1.09005 * 113.61418 * 89.23099 * 12 11 9 14 14 N 1.46496 * 113.61655 * 220.05042 * 12 11 9 15 15 C 1.34784 * 119.99901 * 254.14086 * 14 12 11 16 16 O 1.21283 * 119.99715 * 359.97438 * 15 14 12 17 17 C 1.50701 * 119.99901 * 179.97438 * 15 14 12 18 18 O 1.42899 * 109.47015 * 179.97438 * 17 15 14 19 19 C 1.35893 * 117.00006 * 179.97438 * 18 17 15 20 20 C 1.38711 * 120.05842 * 179.97438 * 19 18 17 21 21 C 1.38164 * 119.94753 * 179.97438 * 20 19 18 22 22 C 1.50693 * 119.97449 * 179.97438 * 21 20 19 23 23 O 1.42907 * 109.47661 * 300.00776 * 22 21 20 24 24 Si 1.86298 * 109.47618 * 180.02562 * 22 21 20 25 25 C 1.38249 * 120.05509 * 0.28171 * 21 20 19 26 26 C 1.38289 * 120.10807 * 359.44666 * 25 21 20 27 27 C 1.38120 * 120.05580 * 0.55013 * 26 25 21 28 28 C 1.53779 * 113.61561 * 205.00130 * 9 8 6 29 29 H 1.09005 * 109.46952 * 299.99680 * 1 2 3 30 30 H 1.08998 * 109.47222 * 59.99495 * 1 2 3 31 31 H 1.09003 * 109.47338 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47054 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47414 * 300.00387 * 3 2 1 34 34 H 1.09005 * 109.46876 * 60.00273 * 3 2 1 35 35 H 1.08996 * 109.47697 * 299.99814 * 4 2 1 36 36 H 1.08999 * 109.46979 * 60.00952 * 4 2 1 37 37 H 1.09005 * 109.46762 * 179.97438 * 4 2 1 38 38 H 0.96997 * 120.00174 * 359.97438 * 8 6 5 39 39 H 1.08996 * 113.61100 * 25.42718 * 11 9 8 40 40 H 1.08996 * 113.66482 * 254.47101 * 11 9 8 41 41 H 0.97002 * 120.00161 * 74.13014 * 14 12 11 42 42 H 1.09006 * 109.46738 * 59.99600 * 17 15 14 43 43 H 1.08994 * 109.47219 * 299.99856 * 17 15 14 44 44 H 1.08005 * 120.02410 * 0.02562 * 20 19 18 45 45 H 1.09000 * 109.46936 * 60.00399 * 22 21 20 46 46 H 0.96697 * 114.00527 * 179.97438 * 23 22 21 47 47 H 1.48506 * 109.99834 * 298.68714 * 24 22 21 48 48 H 1.48502 * 110.00011 * 59.99978 * 24 22 21 49 49 H 1.07990 * 119.94073 * 179.69986 * 25 21 20 50 50 H 1.08001 * 119.97155 * 180.25415 * 26 25 21 51 51 H 1.08005 * 120.03049 * 179.70681 * 27 26 25 52 52 H 1.09001 * 113.61354 * 105.38739 * 28 9 8 53 53 H 1.09004 * 113.61300 * 334.48075 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3383 7 8 0.9508 -2.5095 0.5039 8 7 2.0680 -2.6658 2.4165 9 6 1.6739 -4.0670 2.5830 10 1 0.7590 -4.3161 2.0453 11 6 2.8201 -5.0661 2.3421 12 6 2.2714 -5.8610 3.5387 13 1 1.5199 -6.6011 3.2637 14 7 3.3157 -6.4070 4.4091 15 6 3.5933 -7.7256 4.3831 16 8 2.9783 -8.4602 3.6394 17 6 4.6680 -8.2872 5.2780 18 8 4.7730 -9.6970 5.0693 19 6 5.7031 -10.3618 5.8040 20 6 5.8586 -11.7318 5.6525 21 6 6.8052 -12.4053 6.4002 22 6 6.9743 -13.8938 6.2366 23 8 5.7472 -14.5511 6.5595 24 14 8.3191 -14.4953 7.3770 25 6 7.5932 -11.7159 7.3031 26 6 7.4439 -10.3492 7.4519 27 6 6.4990 -9.6712 6.7067 28 6 1.6755 -4.5376 4.0471 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6766 -1.7490 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7210 -1.2496 38 1 2.6282 -2.2373 3.0824 39 1 3.8103 -4.6446 2.5150 40 1 2.7450 -5.5977 1.3935 41 1 3.8074 -5.8195 5.0040 42 1 4.4119 -8.0924 6.3195 43 1 5.6208 -7.8128 5.0433 44 1 5.2407 -12.2714 4.9500 45 1 7.2456 -14.1173 5.2048 46 1 5.7827 -15.5137 6.4757 47 1 9.6076 -13.8429 7.0314 48 1 7.9607 -14.1964 8.7869 49 1 8.3292 -12.2450 7.8901 50 1 8.0634 -9.8121 8.1549 51 1 6.3796 -8.6045 6.8267 52 1 0.6777 -4.6431 4.4728 53 1 2.3523 -3.9713 4.6870 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941094_4860298.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:29:06 Heat of formation + Delta-G solvation = -127.041280 kcal Electronic energy + Delta-G solvation = -33574.167135 eV Core-core repulsion = 28800.154297 eV Total energy + Delta-G solvation = -4774.012839 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.192 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.99561 -41.64947 -40.99892 -39.83709 -38.87114 -37.94192 -37.30773 -35.64582 -34.96974 -33.55710 -32.68660 -31.77122 -29.45492 -28.40025 -28.32684 -26.88888 -26.84432 -25.76938 -23.81968 -23.40101 -22.38962 -21.73215 -21.40692 -20.80359 -19.27556 -19.21526 -18.44429 -18.26121 -18.08794 -17.60049 -17.50443 -17.24484 -17.20265 -16.89716 -16.26917 -15.97217 -15.83960 -15.61582 -15.51059 -15.36461 -15.20285 -14.72625 -14.63194 -14.42346 -14.33644 -14.04265 -13.84180 -13.65000 -13.55195 -13.39329 -13.23617 -13.17074 -12.95588 -12.89527 -12.62817 -12.52731 -12.47158 -12.43434 -12.26709 -12.22215 -12.17517 -12.04005 -11.84846 -11.42687 -11.14856 -11.05728 -10.43663 -10.32867 -10.11625 -9.97425 -9.42476 -4.92822 0.07061 0.22675 1.07800 1.26331 1.36542 1.47332 1.65430 1.69776 1.96285 2.50040 2.53085 3.12219 3.27942 3.37636 3.42707 3.50772 3.71346 3.72248 3.74187 3.77516 3.78778 3.83319 3.85861 3.91590 3.96706 4.04020 4.15207 4.19991 4.39339 4.39684 4.53745 4.55575 4.57122 4.58195 4.61945 4.70835 4.73550 4.81286 4.81800 4.85001 4.85129 4.91765 4.96442 5.08013 5.09757 5.18965 5.23041 5.24025 5.29501 5.31864 5.45329 5.53403 5.56382 6.17443 6.35965 6.42049 6.87079 7.07874 7.31115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.368 6.368 6 C 0.642 3.358 7 O -0.596 6.596 8 N -0.684 5.684 9 C 0.139 3.861 10 H 0.104 0.896 11 C -0.162 4.162 12 C 0.125 3.875 13 H 0.098 0.902 14 N -0.693 5.693 15 C 0.514 3.486 16 O -0.573 6.573 17 C 0.035 3.965 18 O -0.319 6.319 19 C 0.121 3.879 20 C -0.145 4.145 21 C -0.052 4.052 22 C -0.091 4.091 23 O -0.566 6.566 24 Si 0.788 3.212 25 C -0.181 4.181 26 C -0.071 4.071 27 C -0.201 4.201 28 C -0.126 4.126 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.420 0.580 39 H 0.107 0.893 40 H 0.058 0.942 41 H 0.424 0.576 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.122 0.878 45 H 0.090 0.910 46 H 0.404 0.596 47 H -0.283 1.283 48 H -0.293 1.293 49 H 0.122 0.878 50 H 0.160 0.840 51 H 0.169 0.831 52 H 0.096 0.904 53 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.399 4.548 5.231 8.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.092 3.908 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.282 6.282 6 C 0.396 3.604 7 O -0.487 6.487 8 N -0.344 5.344 9 C 0.034 3.966 10 H 0.122 0.878 11 C -0.203 4.203 12 C 0.019 3.981 13 H 0.116 0.884 14 N -0.348 5.348 15 C 0.300 3.700 16 O -0.451 6.451 17 C -0.043 4.043 18 O -0.232 6.232 19 C 0.076 3.924 20 C -0.164 4.164 21 C -0.052 4.052 22 C -0.200 4.200 23 O -0.376 6.376 24 Si 0.692 3.308 25 C -0.199 4.199 26 C -0.089 4.089 27 C -0.219 4.219 28 C -0.165 4.165 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.258 0.742 39 H 0.125 0.875 40 H 0.077 0.923 41 H 0.263 0.737 42 H 0.145 0.855 43 H 0.145 0.855 44 H 0.140 0.860 45 H 0.108 0.892 46 H 0.255 0.745 47 H -0.210 1.210 48 H -0.221 1.221 49 H 0.139 0.861 50 H 0.177 0.823 51 H 0.186 0.814 52 H 0.114 0.886 53 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.860 4.599 4.789 8.228 hybrid contribution -0.053 0.690 -0.166 0.712 sum 4.807 5.290 4.623 8.512 Atomic orbital electron populations 1.22482 0.94083 1.03667 1.03571 1.22337 0.94422 0.92593 0.81460 1.21890 1.02484 0.90795 1.04290 1.22480 1.01647 1.02197 0.97490 1.86306 1.71484 1.23234 1.47185 1.18456 0.78579 0.80750 0.82647 1.90921 1.42351 1.71093 1.44315 1.44597 1.54831 1.11856 1.23092 1.22278 0.98442 0.77379 0.98477 0.87813 1.24059 1.00247 0.97004 0.98953 1.22155 0.90515 0.94504 0.90951 0.88355 1.45534 1.38865 1.07038 1.43319 1.20559 0.83694 0.83005 0.82743 1.90779 1.52498 1.59849 1.41963 1.22795 1.00060 0.79948 1.01463 1.86130 1.54354 1.21698 1.61055 1.19172 0.89500 0.91845 0.91929 1.20331 1.00980 0.91784 1.03322 1.19499 0.95406 0.94956 0.95358 1.25057 0.96416 0.90396 1.08112 1.86451 1.33309 1.26088 1.91740 0.94217 0.72995 0.88721 0.74829 1.21026 1.02125 0.96275 1.00487 1.21254 0.96640 0.93203 0.97802 1.21622 0.98910 1.02202 0.99199 1.23700 1.04087 0.93634 0.95048 0.91761 0.89558 0.91869 0.91121 0.88423 0.91018 0.91944 0.89542 0.91916 0.74169 0.87495 0.92339 0.73665 0.85485 0.85466 0.85967 0.89193 0.74510 1.21042 1.22079 0.86053 0.82274 0.81386 0.88577 0.85455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.54 8.37 71.98 0.60 0.06 16 2 C 0.13 0.32 1.13 -10.79 -0.01 0.30 16 3 C -0.14 0.37 8.85 71.98 0.64 1.01 16 4 C -0.18 -0.61 8.37 71.98 0.60 0.00 16 5 O -0.37 -1.57 9.94 -55.42 -0.55 -2.12 16 6 C 0.64 3.57 8.06 129.79 1.05 4.62 16 7 O -0.60 -7.10 11.48 19.79 0.23 -6.87 16 8 N -0.68 1.51 5.37 -567.32 -3.04 -1.54 16 9 C 0.14 -0.40 4.24 45.58 0.19 -0.21 16 10 H 0.10 0.20 7.46 -2.38 -0.02 0.18 16 11 C -0.16 0.41 7.70 31.18 0.24 0.65 16 12 C 0.12 -0.45 4.21 45.52 0.19 -0.26 16 13 H 0.10 0.22 7.50 -2.38 -0.02 0.20 16 14 N -0.69 4.26 5.36 -440.02 -2.36 1.90 16 15 C 0.51 1.24 7.91 87.66 0.69 1.93 16 16 O -0.57 -8.58 16.12 16.00 0.26 -8.32 16 17 C 0.03 -0.10 5.22 71.24 0.37 0.27 16 18 O -0.32 -2.54 9.67 -73.31 -0.71 -3.25 16 19 C 0.12 0.81 6.69 22.51 0.15 0.96 16 20 C -0.15 -1.40 9.55 22.37 0.21 -1.18 16 21 C -0.05 -0.38 5.42 -19.88 -0.11 -0.49 16 22 C -0.09 -0.19 2.81 71.23 0.20 0.01 16 23 O -0.57 -1.65 12.74 -148.98 -1.90 -3.55 16 24 Si 0.79 -1.12 29.79 68.60 2.04 0.93 16 25 C -0.18 -0.96 8.67 22.28 0.19 -0.76 16 26 C -0.07 -0.07 10.04 22.25 0.22 0.15 16 27 C -0.20 -0.05 9.04 22.37 0.20 0.16 16 28 C -0.13 1.16 7.58 31.12 0.24 1.40 16 29 H 0.06 0.13 8.14 -2.38 -0.02 0.11 16 30 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.06 0.54 5.88 -2.39 -0.01 0.52 16 32 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 34 H 0.07 -0.23 8.14 -2.38 -0.02 -0.25 16 35 H 0.06 0.56 5.88 -2.39 -0.01 0.55 16 36 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 37 H 0.06 0.16 8.14 -2.38 -0.02 0.14 16 38 H 0.42 -3.41 8.84 -92.71 -0.82 -4.23 16 39 H 0.11 -0.59 8.14 -2.39 -0.02 -0.61 16 40 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 41 H 0.42 -6.27 8.71 -92.71 -0.81 -7.07 16 42 H 0.13 -1.20 7.67 -2.38 -0.02 -1.22 16 43 H 0.13 -1.22 7.66 -2.39 -0.02 -1.24 16 44 H 0.12 1.38 8.06 -2.91 -0.02 1.36 16 45 H 0.09 -0.10 7.96 -2.39 -0.02 -0.12 16 46 H 0.40 -3.28 8.74 -74.06 -0.65 -3.93 16 47 H -0.28 -0.87 7.11 99.48 0.71 -0.17 16 48 H -0.29 -1.63 7.11 99.48 0.71 -0.92 16 49 H 0.12 0.48 4.87 -2.92 -0.01 0.47 16 50 H 0.16 -0.84 8.06 -2.91 -0.02 -0.86 16 51 H 0.17 -1.38 6.30 -2.91 -0.02 -1.40 16 52 H 0.10 -0.88 8.14 -2.39 -0.02 -0.90 16 53 H 0.13 -1.93 8.09 -2.39 -0.02 -1.95 16 Total: 0.00 -34.85 431.63 -1.43 -36.27 By element: Atomic # 1 Polarization: -20.78 SS G_CDS: -1.27 Total: -22.06 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 5.88 Total: 8.61 kcal Atomic # 7 Polarization: 5.76 SS G_CDS: -5.40 Total: 0.36 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -2.67 Total: -24.11 kcal Atomic # 14 Polarization: -1.12 SS G_CDS: 2.04 Total: 0.93 kcal Total: -34.85 -1.43 -36.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941094_4860298.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.767 kcal (2) G-P(sol) polarization free energy of solvation -34.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds