Wall clock time and date at job start Sun Mar 7 2021 00:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46997 * 2 1 4 4 C 1.52995 * 109.47339 * 239.99470 * 2 1 3 5 5 O 1.45208 * 109.47263 * 119.99724 * 2 1 3 6 6 C 1.34632 * 116.99775 * 59.99674 * 5 2 1 7 7 O 1.21510 * 120.00214 * 0.02562 * 6 5 2 8 8 N 1.34781 * 119.99765 * 180.02562 * 6 5 2 9 9 C 1.46495 * 120.00035 * 180.02562 * 8 6 5 10 10 H 1.09006 * 112.84927 * 333.05701 * 9 8 6 11 11 C 1.53781 * 113.61544 * 104.36246 * 9 8 6 12 12 C 1.53773 * 87.08074 * 89.11839 * 11 9 8 13 13 H 1.08999 * 113.61602 * 139.98108 * 12 11 9 14 14 N 1.46501 * 113.61474 * 270.88257 * 12 11 9 15 15 C 1.34773 * 120.00408 * 182.70649 * 14 12 11 16 16 O 1.21697 * 119.99978 * 359.97438 * 15 14 12 17 17 C 1.46676 * 120.00432 * 180.02562 * 15 14 12 18 18 C 1.37870 * 126.23938 * 179.68870 * 17 15 14 19 19 C 1.39829 * 107.08718 * 179.84827 * 18 17 15 20 20 C 1.35450 * 107.86879 * 0.41348 * 19 18 17 21 21 C 1.50695 * 125.56761 * 179.72494 * 20 19 18 22 22 O 1.42896 * 109.47495 * 120.02585 * 21 20 19 23 23 Si 1.86293 * 109.47240 * 0.02562 * 21 20 19 24 24 N 1.35535 * 108.86701 * 359.74238 * 20 19 18 25 25 C 1.53777 * 113.61807 * 201.86122 * 9 8 6 26 26 H 1.09001 * 109.47355 * 299.99999 * 1 2 3 27 27 H 1.08994 * 109.47552 * 60.00276 * 1 2 3 28 28 H 1.08999 * 109.47202 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47049 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46503 * 299.99602 * 3 2 1 31 31 H 1.08994 * 109.47200 * 60.00158 * 3 2 1 32 32 H 1.09001 * 109.47601 * 300.00186 * 4 2 1 33 33 H 1.09007 * 109.47001 * 60.00185 * 4 2 1 34 34 H 1.09004 * 109.47381 * 179.97438 * 4 2 1 35 35 H 0.97004 * 119.99834 * 0.27250 * 8 6 5 36 36 H 1.09004 * 113.61404 * 203.66919 * 11 9 8 37 37 H 1.08996 * 113.61584 * 334.56521 * 11 9 8 38 38 H 0.97005 * 119.99744 * 2.70017 * 14 12 11 39 39 H 1.08006 * 126.45029 * 359.97438 * 18 17 15 40 40 H 1.08006 * 126.06772 * 180.16166 * 19 18 17 41 41 H 1.09008 * 109.46802 * 240.02282 * 21 20 19 42 42 H 0.96705 * 114.00375 * 179.97438 * 22 21 20 43 43 H 1.48506 * 110.00026 * 60.00097 * 23 21 20 44 44 H 1.48497 * 110.00291 * 181.32099 * 23 21 20 45 45 H 0.97000 * 125.67602 * 179.97438 * 24 20 19 46 46 H 1.09003 * 113.61364 * 25.42719 * 25 9 8 47 47 H 1.08993 * 113.62315 * 156.24730 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9722 1.3385 7 8 0.9516 -2.5096 0.5038 8 7 2.0672 -2.6653 2.4174 9 6 1.6740 -4.0667 2.5834 10 1 0.7314 -4.3032 2.0897 11 6 2.8022 -5.0641 2.2717 12 6 3.2075 -4.9472 3.7504 13 1 3.5035 -5.8957 4.1984 14 7 4.1642 -3.8693 4.0132 15 6 4.6486 -3.6866 5.2575 16 8 4.2908 -4.4168 6.1630 17 6 5.6060 -2.6071 5.5208 18 6 6.1758 -2.3020 6.7386 19 6 7.0252 -1.2104 6.5329 20 6 6.9539 -0.8693 5.2240 21 6 7.7065 0.2611 4.5706 22 8 8.5428 -0.2591 3.5353 23 14 8.7579 1.1245 5.8431 24 7 6.0950 -1.7103 4.5980 25 6 1.7476 -4.5589 4.0384 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 1.6767 -1.7490 -1.2491 33 1 1.6767 -0.2075 -2.1392 34 1 3.1300 -0.7209 -1.2494 35 1 2.6233 -2.2351 3.0857 36 1 2.4441 -6.0555 1.9941 37 1 3.5508 -4.6749 1.5816 38 1 4.4492 -3.2871 3.2915 39 1 6.0008 -2.8116 7.6746 40 1 7.6277 -0.7230 7.2851 41 1 6.9976 0.9703 4.1431 42 1 9.0578 0.4143 3.0700 43 1 9.7287 0.1683 6.4335 44 1 9.4808 2.2612 5.2181 45 1 5.8630 -1.6842 3.6565 46 1 1.6450 -3.7618 4.7748 47 1 1.1003 -5.4112 4.2444 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941094_6580494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:29:33 Heat of formation + Delta-G solvation = -69.808106 kcal Electronic energy + Delta-G solvation = -30503.660448 eV Core-core repulsion = 26269.149467 eV Total energy + Delta-G solvation = -4234.510981 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.59729 -42.06309 -41.09147 -39.48373 -37.94919 -37.80137 -35.48350 -34.84920 -33.68198 -32.12196 -31.44432 -28.40695 -28.33902 -27.33793 -26.87696 -25.78609 -23.95076 -22.78974 -21.59650 -21.49502 -21.05874 -20.62032 -19.65471 -19.29505 -18.62675 -17.71021 -17.37165 -17.18662 -16.89319 -16.63188 -16.38704 -16.13009 -15.78429 -15.56886 -15.36450 -15.20387 -14.94113 -14.62174 -14.50580 -14.09514 -13.94012 -13.81427 -13.53439 -13.46982 -13.38853 -13.15983 -13.05885 -12.94920 -12.91000 -12.72945 -12.59104 -12.35687 -12.14744 -12.02989 -11.58737 -11.44770 -11.31467 -11.18200 -10.65529 -10.45230 -10.21886 -10.08432 -9.27636 -4.83868 0.26701 1.01861 1.20953 1.53764 1.63868 1.65651 1.86080 1.98196 2.15724 2.23978 3.01069 3.23889 3.25550 3.43559 3.65353 3.70001 3.75656 3.78462 3.79911 3.90263 4.00811 4.21393 4.28195 4.42605 4.45209 4.52546 4.57796 4.60041 4.68552 4.72730 4.72927 4.77442 4.82945 4.84267 4.89350 4.91076 4.94772 5.05087 5.10122 5.16277 5.23498 5.28604 5.43434 5.52113 5.59700 5.77950 6.19553 6.24380 6.37993 6.51989 6.96812 7.22482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.129 3.871 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.368 6.368 6 C 0.647 3.353 7 O -0.586 6.586 8 N -0.687 5.687 9 C 0.131 3.869 10 H 0.103 0.897 11 C -0.140 4.140 12 C 0.116 3.884 13 H 0.095 0.905 14 N -0.707 5.707 15 C 0.594 3.406 16 O -0.558 6.558 17 C -0.068 4.068 18 C -0.113 4.113 19 C -0.207 4.207 20 C 0.070 3.930 21 C -0.067 4.067 22 O -0.562 6.562 23 Si 0.788 3.212 24 N -0.514 5.514 25 C -0.145 4.145 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.408 0.592 36 H 0.130 0.870 37 H 0.079 0.921 38 H 0.403 0.597 39 H 0.150 0.850 40 H 0.167 0.833 41 H 0.107 0.893 42 H 0.401 0.599 43 H -0.300 1.300 44 H -0.280 1.280 45 H 0.425 0.575 46 H 0.069 0.931 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.708 5.952 -2.342 6.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.093 3.907 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.282 6.282 6 C 0.400 3.600 7 O -0.476 6.476 8 N -0.347 5.347 9 C 0.027 3.973 10 H 0.121 0.879 11 C -0.179 4.179 12 C 0.012 3.988 13 H 0.113 0.887 14 N -0.359 5.359 15 C 0.383 3.617 16 O -0.436 6.436 17 C -0.181 4.181 18 C -0.139 4.139 19 C -0.231 4.231 20 C -0.049 4.049 21 C -0.175 4.175 22 O -0.372 6.372 23 Si 0.691 3.309 24 N -0.111 5.111 25 C -0.184 4.184 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.244 0.756 36 H 0.149 0.851 37 H 0.097 0.903 38 H 0.240 0.760 39 H 0.168 0.832 40 H 0.184 0.816 41 H 0.124 0.876 42 H 0.252 0.748 43 H -0.228 1.228 44 H -0.207 1.207 45 H 0.264 0.736 46 H 0.088 0.912 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.547 4.882 -1.931 5.278 hybrid contribution 0.700 0.168 -1.576 1.733 sum 1.247 5.049 -3.507 6.273 Atomic orbital electron populations 1.22494 0.94229 1.03734 1.03517 1.22351 0.94334 0.92584 0.81413 1.21898 1.02572 0.90783 1.04246 1.22482 1.01738 1.02289 0.97271 1.86303 1.71478 1.23060 1.47408 1.18286 0.78552 0.80776 0.82344 1.90923 1.41767 1.70972 1.43975 1.44500 1.55326 1.11928 1.22919 1.22001 0.99277 0.78113 0.97932 0.87882 1.23769 0.98067 1.01830 0.94234 1.22025 0.88568 0.90673 0.97573 0.88653 1.45627 1.45800 1.34795 1.09660 1.17132 0.79398 0.82455 0.82686 1.90859 1.60589 1.47073 1.45112 1.20310 1.07562 0.98774 0.91460 1.21481 0.97741 0.97987 0.96726 1.20897 1.05766 1.00928 0.95533 1.20220 0.96047 0.95791 0.92836 1.24762 0.98156 0.96163 0.98425 1.86521 1.60923 1.39620 1.50166 0.93448 0.79937 0.76427 0.81055 1.41859 1.34244 1.24176 1.10843 1.23770 0.96931 1.02863 0.94861 0.92031 0.89459 0.91747 0.90920 0.88397 0.91203 0.91689 0.89568 0.91717 0.75555 0.85142 0.90273 0.76042 0.83222 0.81597 0.87573 0.74758 1.22760 1.20667 0.73580 0.91207 0.85450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.33 8.37 71.98 0.60 0.27 16 2 C 0.13 0.09 1.13 -10.79 -0.01 0.08 16 3 C -0.14 0.60 8.85 71.98 0.64 1.24 16 4 C -0.18 -0.16 8.37 71.98 0.60 0.44 16 5 O -0.37 -1.00 9.94 -55.41 -0.55 -1.55 16 6 C 0.65 2.80 8.06 129.79 1.05 3.84 16 7 O -0.59 -5.60 11.52 19.81 0.23 -5.38 16 8 N -0.69 0.72 4.96 -567.61 -2.82 -2.09 16 9 C 0.13 -0.31 4.28 45.52 0.19 -0.12 16 10 H 0.10 0.01 7.54 -2.38 -0.02 -0.01 16 11 C -0.14 0.72 7.57 31.12 0.24 0.95 16 12 C 0.12 -0.28 4.00 45.51 0.18 -0.10 16 13 H 0.10 -0.02 8.05 -2.39 -0.02 -0.04 16 14 N -0.71 1.29 4.33 -444.02 -1.92 -0.63 16 15 C 0.59 2.94 7.79 86.45 0.67 3.61 16 16 O -0.56 -7.11 16.82 -4.34 -0.07 -7.19 16 17 C -0.07 -0.23 7.06 40.35 0.28 0.05 16 18 C -0.11 -0.51 10.65 22.57 0.24 -0.27 16 19 C -0.21 -0.22 9.32 22.01 0.21 -0.02 16 20 C 0.07 -0.04 6.51 41.34 0.27 0.23 16 21 C -0.07 0.33 3.07 71.23 0.22 0.55 16 22 O -0.56 1.48 12.86 -148.98 -1.92 -0.44 16 23 Si 0.79 -4.07 30.54 68.60 2.10 -1.97 16 24 N -0.51 0.71 5.99 -171.94 -1.03 -0.32 16 25 C -0.15 0.44 7.61 31.12 0.24 0.68 16 26 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 27 H 0.09 -0.13 8.14 -2.39 -0.02 -0.15 16 28 H 0.06 0.46 5.88 -2.39 -0.01 0.44 16 29 H 0.07 -0.38 8.14 -2.38 -0.02 -0.40 16 30 H 0.10 -0.70 8.14 -2.39 -0.02 -0.72 16 31 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 32 H 0.06 0.40 5.88 -2.39 -0.01 0.39 16 33 H 0.09 -0.18 8.14 -2.38 -0.02 -0.20 16 34 H 0.06 -0.02 8.14 -2.38 -0.02 -0.04 16 35 H 0.41 -1.48 7.31 -92.70 -0.68 -2.15 16 36 H 0.13 -1.04 8.14 -2.39 -0.02 -1.05 16 37 H 0.08 -0.36 8.13 -2.39 -0.02 -0.38 16 38 H 0.40 -2.40 6.96 -92.70 -0.64 -3.04 16 39 H 0.15 0.67 8.06 -2.91 -0.02 0.64 16 40 H 0.17 -0.50 6.17 -2.91 -0.02 -0.52 16 41 H 0.11 -1.07 7.96 -2.38 -0.02 -1.09 16 42 H 0.40 -4.20 8.74 -74.05 -0.65 -4.84 16 43 H -0.30 -1.01 7.11 99.48 0.71 -0.31 16 44 H -0.28 0.46 7.11 99.48 0.71 1.17 16 45 H 0.43 -2.63 8.19 -92.71 -0.76 -3.39 16 46 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 47 H 0.13 -0.73 8.14 -2.39 -0.02 -0.75 16 Total: 0.00 -22.82 384.10 -2.02 -24.84 By element: Atomic # 1 Polarization: -15.07 SS G_CDS: -1.65 Total: -16.72 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 5.62 Total: 11.45 kcal Atomic # 7 Polarization: 2.72 SS G_CDS: -5.77 Total: -3.05 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -2.31 Total: -14.55 kcal Atomic # 14 Polarization: -4.07 SS G_CDS: 2.10 Total: -1.97 kcal Total: -22.82 -2.02 -24.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941094_6580494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.965 kcal (2) G-P(sol) polarization free energy of solvation -22.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds