Wall clock time and date at job start Sun Mar 7 2021 00:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 O 1.45194 * 109.47339 * 239.99574 * 2 1 3 6 6 C 1.34639 * 116.99841 * 60.00459 * 5 2 1 7 7 O 1.21508 * 119.99991 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00005 * 179.97438 * 6 5 2 9 9 C 1.46505 * 119.99900 * 179.97438 * 8 6 5 10 10 H 1.08994 * 112.84899 * 23.80343 * 9 8 6 11 11 C 1.53782 * 113.61231 * 155.00465 * 9 8 6 12 12 C 1.53780 * 87.07914 * 139.98162 * 11 9 8 13 13 H 1.08996 * 113.61681 * 89.11464 * 12 11 9 14 14 N 1.46507 * 113.61039 * 219.93248 * 12 11 9 15 15 C 1.34770 * 119.99879 * 204.99978 * 14 12 11 16 16 O 1.21641 * 120.00459 * 0.02562 * 15 14 12 17 17 C 1.47193 * 119.99996 * 179.97438 * 15 14 12 18 18 C 1.36010 * 123.45963 * 359.71108 * 17 15 14 19 19 S 1.70446 * 110.81491 * 179.85350 * 18 17 15 20 20 C 1.75498 * 92.44583 * 0.34708 * 19 18 17 21 21 C 1.50704 * 124.71484 * 179.80597 * 20 19 18 22 22 O 1.42902 * 109.47035 * 245.00068 * 21 20 19 23 23 Si 1.86308 * 109.46736 * 4.99494 * 21 20 19 24 24 C 1.32768 * 110.57901 * 359.79897 * 20 19 18 25 25 C 1.53773 * 87.08273 * 334.56420 * 12 11 9 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 32 32 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 33 33 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 35 35 H 0.97001 * 119.99769 * 0.02562 * 8 6 5 36 36 H 1.09000 * 113.60703 * 254.52583 * 11 9 8 37 37 H 1.08993 * 113.61910 * 25.34280 * 11 9 8 38 38 H 0.97003 * 119.99744 * 25.00040 * 14 12 11 39 39 H 1.08001 * 124.58963 * 359.97438 * 18 17 15 40 40 H 1.08995 * 109.47227 * 124.99679 * 21 20 19 41 41 H 0.96698 * 113.99973 * 180.02562 * 22 21 20 42 42 H 1.48500 * 109.99712 * 178.68297 * 23 21 20 43 43 H 1.48500 * 109.99901 * 300.00100 * 23 21 20 44 44 H 1.07999 * 123.46286 * 179.97438 * 24 20 19 45 45 H 1.09004 * 113.61844 * 270.88691 * 25 12 11 46 46 H 1.09004 * 113.61548 * 139.98502 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 2.0140 -0.6845 -1.1854 6 6 1.6523 -0.1729 -2.3772 7 8 0.9510 0.8182 -2.4252 8 7 2.0682 -0.7601 -3.5168 9 6 1.6742 -0.2038 -4.8136 10 1 1.4211 0.8551 -4.7605 11 6 2.6477 -0.5482 -5.9531 12 6 1.4104 -0.7467 -6.8444 13 1 1.0840 0.1635 -7.3475 14 7 1.5190 -1.8911 -7.7527 15 6 0.8064 -1.9136 -8.8964 16 8 0.0734 -0.9837 -9.1748 17 6 0.9160 -3.0631 -9.8092 18 6 1.7176 -4.1358 -9.5714 19 16 1.5931 -5.2763 -10.8320 20 6 0.4413 -4.2882 -11.7135 21 6 -0.1746 -4.6625 -13.0370 22 8 0.2572 -3.7416 -14.0408 23 14 0.3580 -6.3855 -13.5046 24 6 0.1878 -3.1651 -11.0523 25 6 0.6286 -1.0525 -5.5560 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 -1.7488 1.2493 33 1 3.1300 -0.7207 1.2495 34 1 1.6766 -0.2073 2.1393 35 1 2.6277 -1.5516 -3.4784 36 1 3.2759 0.2886 -6.2584 37 1 3.2150 -1.4628 -5.7812 38 1 2.1038 -2.6326 -7.5308 39 1 2.3462 -4.2504 -8.7007 40 1 -1.2609 -4.6276 -12.9550 41 1 -0.1016 -3.9218 -14.9204 42 1 -0.2681 -6.7786 -14.7925 43 1 1.8373 -6.4462 -13.6195 44 1 -0.4926 -2.4054 -11.4078 45 1 0.6428 -2.1060 -5.2762 46 1 -0.3732 -0.6231 -5.5407 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941094_6894386.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:29:44 Heat of formation + Delta-G solvation = -89.132862 kcal Electronic energy + Delta-G solvation = -28448.783990 eV Core-core repulsion = 24239.787041 eV Total energy + Delta-G solvation = -4208.996949 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 355.133 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.96359 -41.28508 -39.93435 -38.70041 -37.93718 -37.24281 -35.62156 -34.94240 -33.54288 -31.74057 -28.38130 -28.30826 -26.98802 -26.81884 -26.72220 -24.94645 -23.04627 -21.89915 -21.53274 -20.92680 -20.33242 -19.23285 -18.75326 -18.50248 -18.22757 -17.84209 -17.19946 -17.11960 -16.43440 -16.15687 -16.06382 -15.96418 -15.53417 -15.45275 -15.35107 -14.72826 -14.41260 -14.18661 -14.04004 -13.87265 -13.84869 -13.63197 -13.52535 -13.37320 -13.15033 -12.93629 -12.87580 -12.74639 -12.60822 -12.49344 -12.47539 -12.33850 -12.21371 -12.03004 -11.98212 -11.40692 -11.12717 -11.03352 -10.60494 -10.30348 -10.11911 -9.95081 -9.44985 -5.04987 -0.33628 0.37341 0.70031 0.81473 1.12286 1.21066 1.57582 1.71763 1.88083 2.10163 2.24165 3.14574 3.28781 3.33557 3.46845 3.65618 3.73288 3.77180 3.80132 3.84532 3.91789 3.93508 4.01444 4.27258 4.40806 4.42942 4.56735 4.59759 4.60007 4.63805 4.71554 4.73576 4.75497 4.83237 4.84030 4.86987 4.93681 4.98072 5.01096 5.12362 5.16618 5.25904 5.26273 5.35125 5.49886 5.58307 6.38270 6.46662 6.52026 7.14269 7.33214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.127 3.873 3 C -0.180 4.180 4 C -0.137 4.137 5 O -0.367 6.367 6 C 0.642 3.358 7 O -0.596 6.596 8 N -0.684 5.684 9 C 0.141 3.859 10 H 0.105 0.895 11 C -0.129 4.129 12 C 0.123 3.877 13 H 0.100 0.900 14 N -0.695 5.695 15 C 0.577 3.423 16 O -0.584 6.584 17 C -0.183 4.183 18 C -0.187 4.187 19 S 0.248 5.752 20 C -0.212 4.212 21 C -0.052 4.052 22 O -0.557 6.557 23 Si 0.725 3.275 24 C -0.079 4.079 25 C -0.161 4.161 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.420 0.580 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.418 0.582 39 H 0.211 0.789 40 H 0.100 0.900 41 H 0.398 0.602 42 H -0.258 1.258 43 H -0.267 1.267 44 H 0.132 0.868 45 H 0.106 0.894 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.098 -8.773 2.767 10.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 C -0.238 4.238 4 C -0.194 4.194 5 O -0.282 6.282 6 C 0.396 3.604 7 O -0.487 6.487 8 N -0.344 5.344 9 C 0.036 3.964 10 H 0.123 0.877 11 C -0.167 4.167 12 C 0.017 3.983 13 H 0.118 0.882 14 N -0.347 5.347 15 C 0.364 3.636 16 O -0.466 6.466 17 C -0.201 4.201 18 C -0.325 4.325 19 S 0.514 5.486 20 C -0.329 4.329 21 C -0.162 4.162 22 O -0.368 6.368 23 Si 0.625 3.375 24 C -0.108 4.108 25 C -0.201 4.201 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.258 0.742 36 H 0.113 0.887 37 H 0.143 0.857 38 H 0.256 0.744 39 H 0.228 0.772 40 H 0.118 0.882 41 H 0.249 0.751 42 H -0.183 1.183 43 H -0.193 1.193 44 H 0.150 0.850 45 H 0.124 0.876 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.639 -9.278 2.295 10.624 hybrid contribution -0.825 2.116 -0.730 2.385 sum 3.814 -7.162 1.565 8.264 Atomic orbital electron populations 1.22476 0.94191 1.02918 1.04190 1.22343 0.94347 0.92494 0.81700 1.22477 1.01707 0.95364 1.04214 1.21887 1.02514 1.01244 0.93775 1.86308 1.71480 1.56527 1.13873 1.18445 0.78606 0.81418 0.81923 1.90916 1.42219 1.28154 1.87386 1.44608 1.54904 1.32749 1.02123 1.22232 0.96483 0.98666 0.78984 0.87694 1.23713 0.96079 1.05098 0.91848 1.22170 0.97928 0.90129 0.88027 0.88200 1.45556 1.46066 1.22954 1.20106 1.17913 0.79141 0.85332 0.81176 1.90799 1.40927 1.38888 1.75940 1.20072 1.04627 0.97391 0.98030 1.26199 1.02512 0.97599 1.06224 1.82975 1.37072 1.18808 1.09734 1.23810 1.06649 1.00837 1.01582 1.24411 1.01783 1.04261 0.85745 1.86568 1.74927 1.53431 1.21866 0.94478 0.79740 0.75835 0.87426 1.21012 0.99727 0.97266 0.92796 1.24018 0.99011 1.02100 0.94963 0.91895 0.91933 0.89556 0.89573 0.91794 0.91876 0.91105 0.91051 0.88434 0.74192 0.88683 0.85670 0.74370 0.77241 0.88234 0.75098 1.18272 1.19282 0.85020 0.87578 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.61 8.37 71.98 0.60 -0.01 16 2 C 0.13 0.33 1.13 -10.79 -0.01 0.32 16 3 C -0.18 -0.56 8.37 71.98 0.60 0.04 16 4 C -0.14 0.37 8.85 71.98 0.64 1.00 16 5 O -0.37 -1.64 9.94 -55.48 -0.55 -2.19 16 6 C 0.64 3.74 8.06 129.79 1.05 4.79 16 7 O -0.60 -7.22 11.48 19.82 0.23 -6.99 16 8 N -0.68 1.16 5.36 -567.59 -3.04 -1.88 16 9 C 0.14 -0.30 4.24 45.52 0.19 -0.11 16 10 H 0.11 0.26 7.46 -2.39 -0.02 0.24 16 11 C -0.13 0.99 7.58 31.12 0.24 1.23 16 12 C 0.12 -0.23 4.24 45.51 0.19 -0.03 16 13 H 0.10 0.36 7.46 -2.39 -0.02 0.35 16 14 N -0.70 1.81 5.33 -443.52 -2.36 -0.56 16 15 C 0.58 3.61 7.79 86.60 0.67 4.29 16 16 O -0.58 -9.50 16.40 -4.16 -0.07 -9.57 16 17 C -0.18 -0.58 5.98 -19.87 -0.12 -0.70 16 18 C -0.19 0.86 10.38 67.30 0.70 1.56 16 19 S 0.25 -0.92 20.20 -56.49 -1.14 -2.07 16 20 C -0.21 -0.46 5.69 24.51 0.14 -0.32 16 21 C -0.05 0.02 2.93 71.24 0.21 0.23 16 22 O -0.56 -1.61 12.86 -148.98 -1.92 -3.52 16 23 Si 0.72 -2.56 30.92 68.60 2.12 -0.44 16 24 C -0.08 -0.50 9.95 22.67 0.23 -0.27 16 25 C -0.16 0.25 7.68 31.12 0.24 0.49 16 26 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 27 H 0.06 0.57 5.88 -2.39 -0.01 0.55 16 28 H 0.09 0.01 8.14 -2.38 -0.02 -0.01 16 29 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.06 0.13 8.14 -2.39 -0.02 0.12 16 31 H 0.06 0.54 5.88 -2.39 -0.01 0.53 16 32 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 34 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 35 H 0.42 -3.17 8.84 -92.71 -0.82 -3.99 16 36 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 37 H 0.13 -1.69 8.10 -2.39 -0.02 -1.71 16 38 H 0.42 -4.37 7.23 -92.71 -0.67 -5.04 16 39 H 0.21 -2.82 7.01 -2.91 -0.02 -2.84 16 40 H 0.10 -0.36 7.96 -2.39 -0.02 -0.38 16 41 H 0.40 -2.27 8.74 -74.06 -0.65 -2.92 16 42 H -0.26 0.07 7.11 99.48 0.71 0.77 16 43 H -0.27 -0.51 7.11 99.48 0.71 0.20 16 44 H 0.13 1.31 8.06 -2.91 -0.02 1.29 16 45 H 0.11 -0.47 8.14 -2.38 -0.02 -0.49 16 46 H 0.06 0.20 8.14 -2.38 -0.02 0.18 16 Total: 0.00 -27.31 391.98 -2.23 -29.54 By element: Atomic # 1 Polarization: -13.77 SS G_CDS: -1.06 Total: -14.84 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 5.57 Total: 12.50 kcal Atomic # 7 Polarization: 2.97 SS G_CDS: -5.40 Total: -2.43 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -2.31 Total: -22.26 kcal Atomic # 14 Polarization: -2.56 SS G_CDS: 2.12 Total: -0.44 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -1.14 Total: -2.07 kcal Total: -27.31 -2.23 -29.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941094_6894386.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.597 kcal (2) G-P(sol) polarization free energy of solvation -27.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds