Wall clock time and date at job start Sun Mar 7 2021 00:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37943 * 120.06892 * 2 1 4 4 C 1.38376 * 120.14348 * 180.27904 * 3 2 1 5 5 C 1.50699 * 119.85597 * 179.76539 * 4 3 2 6 6 C 1.38338 * 120.29359 * 359.73405 * 4 3 2 7 7 C 1.50704 * 119.93301 * 180.02562 * 6 4 3 8 8 O 1.42894 * 109.46804 * 75.02120 * 7 6 4 9 9 Si 1.86292 * 109.47366 * 195.02296 * 7 6 4 10 10 C 1.37984 * 120.14473 * 0.02562 * 6 4 3 11 11 C 1.39554 * 119.85258 * 359.97438 * 10 6 4 12 12 C 1.47847 * 120.14681 * 179.97438 * 11 10 6 13 13 O 1.21552 * 120.00126 * 173.75540 * 12 11 10 14 14 N 1.34771 * 119.99701 * 353.75055 * 12 11 10 15 15 C 1.46500 * 119.99958 * 179.97438 * 14 12 11 16 16 H 1.09000 * 112.90561 * 23.75423 * 15 14 12 17 17 C 1.53781 * 113.61240 * 155.00174 * 15 14 12 18 18 C 1.53785 * 87.08040 * 139.98692 * 17 15 14 19 19 H 1.08994 * 113.61448 * 89.11432 * 18 17 15 20 20 N 1.46502 * 113.61427 * 220.02262 * 18 17 15 21 21 C 1.34773 * 119.99903 * 204.99918 * 20 18 17 22 22 O 1.21518 * 120.00011 * 359.97438 * 21 20 18 23 23 O 1.34638 * 120.00247 * 179.97438 * 21 20 18 24 24 C 1.45198 * 117.00252 * 179.97438 * 23 21 20 25 25 C 1.53004 * 109.47079 * 59.99748 * 24 23 21 26 26 C 1.52998 * 109.47247 * 179.97438 * 24 23 21 27 27 C 1.53002 * 109.46911 * 299.99945 * 24 23 21 28 28 C 1.53778 * 113.61867 * 252.49993 * 15 14 12 29 29 H 1.08999 * 109.47189 * 263.62117 * 1 2 3 30 30 H 1.09001 * 109.47435 * 23.62975 * 1 2 3 31 31 H 1.09007 * 109.46686 * 143.63118 * 1 2 3 32 32 H 1.08001 * 119.92803 * 0.02562 * 3 2 1 33 33 H 1.09007 * 109.46791 * 269.97130 * 5 4 3 34 34 H 1.08996 * 109.47109 * 29.96989 * 5 4 3 35 35 H 1.09003 * 109.47480 * 149.97750 * 5 4 3 36 36 H 1.09001 * 109.46618 * 315.02784 * 7 6 4 37 37 H 0.96703 * 114.00075 * 299.99839 * 8 7 6 38 38 H 1.48500 * 110.00386 * 298.68090 * 9 7 6 39 39 H 1.48502 * 110.00141 * 60.00104 * 9 7 6 40 40 H 1.08007 * 120.07584 * 179.97438 * 10 6 4 41 41 H 0.97006 * 120.00705 * 0.02562 * 14 12 11 42 42 H 1.08997 * 113.61620 * 254.53177 * 17 15 14 43 43 H 1.08999 * 113.62001 * 25.43999 * 17 15 14 44 44 H 0.96999 * 120.00230 * 24.99611 * 20 18 17 45 45 H 1.09001 * 109.47351 * 60.00370 * 25 24 23 46 46 H 1.09004 * 109.46812 * 180.02562 * 25 24 23 47 47 H 1.08997 * 109.47544 * 299.99851 * 25 24 23 48 48 H 1.09003 * 109.46781 * 60.00354 * 26 24 23 49 49 H 1.09004 * 109.47248 * 179.97438 * 26 24 23 50 50 H 1.08991 * 109.47644 * 300.00304 * 26 24 23 51 51 H 1.08997 * 109.47299 * 60.00402 * 27 24 23 52 52 H 1.09005 * 109.46659 * 180.02562 * 27 24 23 53 53 H 1.08999 * 109.46956 * 299.99549 * 27 24 23 54 54 H 1.08998 * 113.61350 * 334.57271 * 28 15 14 55 55 H 1.09007 * 113.60997 * 105.47125 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1938 0.0000 4 6 3.5819 1.1956 -0.0058 5 6 4.3304 2.5036 -0.0111 6 6 4.2813 0.0020 -0.0061 7 6 5.7883 0.0135 -0.0119 8 8 6.2668 0.3679 1.2870 9 14 6.4205 -1.6790 -0.4663 10 6 3.6021 -1.1991 -0.0012 11 6 2.2066 -1.2080 0.0047 12 6 1.4723 -2.4912 0.0095 13 8 0.2627 -2.4988 0.1291 14 7 2.1441 -3.6524 -0.1189 15 6 1.4166 -4.9240 -0.1136 16 1 0.3734 -4.8172 -0.4110 17 6 2.1529 -6.0580 -0.8462 18 6 1.6802 -6.9885 0.2833 19 1 0.7091 -7.4460 0.0944 20 7 2.6938 -7.9569 0.7088 21 6 2.3184 -9.1167 1.2834 22 8 1.1392 -9.3590 1.4490 23 8 3.2498 -10.0070 1.6741 24 6 2.7730 -11.2343 2.2860 25 6 1.8779 -11.9832 1.2967 26 6 3.9669 -12.1149 2.6603 27 6 1.9717 -10.8984 3.5454 28 6 1.6091 -5.7386 1.1764 29 1 -0.3633 -0.1142 1.0213 30 1 -0.3634 0.9415 -0.4119 31 1 -0.3633 -0.8276 -0.6094 32 1 1.6581 2.1291 0.0004 33 1 4.5070 2.8169 -1.0402 34 1 3.7404 3.2619 0.5034 35 1 5.2853 2.3779 0.4992 36 1 6.1432 0.7418 -0.7411 37 1 5.9760 1.2393 1.5891 38 1 5.9699 -2.6760 0.5378 39 1 5.9297 -2.0592 -1.8153 40 1 4.1493 -2.1303 -0.0018 41 1 3.1095 -3.6465 -0.2140 42 1 1.7248 -6.2998 -1.8189 43 1 3.2345 -5.9264 -0.8796 44 1 3.6351 -7.7633 0.5770 45 1 2.4487 -12.2226 0.3995 46 1 1.5196 -12.9044 1.7563 47 1 1.0273 -11.3562 1.0296 48 1 4.6049 -11.5815 3.3651 49 1 3.6090 -13.0361 3.1202 50 1 4.5374 -12.3541 1.7630 51 1 1.1211 -10.2713 3.2784 52 1 1.6142 -11.8199 4.0051 53 1 2.6094 -10.3649 4.2503 54 1 2.5419 -5.5195 1.6960 55 1 0.7418 -5.7224 1.8365 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941094_9599494.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:29:52 Heat of formation + Delta-G solvation = -97.847010 kcal Electronic energy + Delta-G solvation = -34987.999840 eV Core-core repulsion = 30378.397533 eV Total energy + Delta-G solvation = -4609.602307 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.208 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.10029 -41.78384 -40.73183 -39.64671 -38.03941 -37.61353 -35.77509 -35.13660 -34.37730 -33.99310 -32.94226 -29.47484 -28.66262 -28.41060 -28.33764 -26.92708 -26.18635 -25.44021 -23.90643 -23.45258 -22.21132 -21.73418 -21.23345 -20.69548 -19.30600 -18.86478 -18.45956 -18.07061 -17.33612 -17.25198 -16.93907 -16.54228 -16.49763 -16.32578 -16.20360 -15.65250 -15.55716 -15.43946 -15.25906 -14.95672 -14.73650 -14.62020 -14.43737 -14.13936 -13.94372 -13.80337 -13.66278 -13.45190 -13.40002 -13.18621 -13.06097 -12.96664 -12.90810 -12.88903 -12.73836 -12.69708 -12.61883 -12.54134 -12.41946 -12.26167 -12.20585 -12.09691 -11.44321 -11.32614 -11.17128 -11.15472 -10.80575 -10.39455 -10.21085 -10.02418 -9.72296 -4.82408 -0.40364 0.03874 1.06558 1.33481 1.54633 1.65059 1.67105 1.90377 1.93414 2.50115 3.07230 3.21432 3.34974 3.35915 3.45462 3.47517 3.67524 3.68582 3.70094 3.74953 3.75981 3.80564 3.90414 4.03564 4.08237 4.32906 4.36424 4.40748 4.46661 4.47688 4.51334 4.51913 4.57299 4.58490 4.66740 4.67732 4.71348 4.72533 4.73691 4.77941 4.80136 4.84019 4.85534 4.89360 4.96280 5.02371 5.07776 5.14452 5.21650 5.23028 5.29604 5.33220 5.38311 5.40420 5.52879 5.69562 6.23453 6.32327 6.61009 6.95381 7.26757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.029 4.029 3 C -0.131 4.131 4 C -0.039 4.039 5 C -0.126 4.126 6 C -0.138 4.138 7 C -0.090 4.090 8 O -0.546 6.546 9 Si 0.793 3.207 10 C -0.086 4.086 11 C -0.162 4.162 12 C 0.556 3.444 13 O -0.556 6.556 14 N -0.707 5.707 15 C 0.123 3.877 16 H 0.111 0.889 17 C -0.133 4.133 18 C 0.145 3.855 19 H 0.112 0.888 20 N -0.687 5.687 21 C 0.644 3.356 22 O -0.593 6.593 23 O -0.368 6.368 24 C 0.127 3.873 25 C -0.180 4.180 26 C -0.137 4.137 27 C -0.181 4.181 28 C -0.164 4.164 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.154 0.846 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.373 0.627 38 H -0.280 1.280 39 H -0.261 1.261 40 H 0.129 0.871 41 H 0.407 0.593 42 H 0.101 0.899 43 H 0.116 0.884 44 H 0.419 0.581 45 H 0.063 0.937 46 H 0.087 0.913 47 H 0.063 0.937 48 H 0.069 0.931 49 H 0.098 0.902 50 H 0.071 0.929 51 H 0.062 0.938 52 H 0.087 0.913 53 H 0.061 0.939 54 H 0.096 0.904 55 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.308 2.875 -2.560 9.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.030 4.030 3 C -0.148 4.148 4 C -0.040 4.040 5 C -0.182 4.182 6 C -0.139 4.139 7 C -0.198 4.198 8 O -0.354 6.354 9 Si 0.693 3.307 10 C -0.105 4.105 11 C -0.165 4.165 12 C 0.345 3.655 13 O -0.436 6.436 14 N -0.358 5.358 15 C 0.018 3.982 16 H 0.129 0.871 17 C -0.172 4.172 18 C 0.040 3.960 19 H 0.130 0.870 20 N -0.347 5.347 21 C 0.397 3.603 22 O -0.484 6.484 23 O -0.283 6.283 24 C 0.091 3.909 25 C -0.237 4.237 26 C -0.194 4.194 27 C -0.238 4.238 28 C -0.204 4.204 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.171 0.829 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.116 0.884 37 H 0.224 0.776 38 H -0.207 1.207 39 H -0.187 1.187 40 H 0.146 0.854 41 H 0.244 0.756 42 H 0.119 0.881 43 H 0.134 0.866 44 H 0.256 0.744 45 H 0.082 0.918 46 H 0.105 0.895 47 H 0.082 0.918 48 H 0.088 0.912 49 H 0.117 0.883 50 H 0.090 0.910 51 H 0.081 0.919 52 H 0.106 0.894 53 H 0.080 0.920 54 H 0.115 0.885 55 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.958 1.261 -2.615 7.539 hybrid contribution -0.990 1.024 0.389 1.476 sum 5.968 2.285 -2.226 6.767 Atomic orbital electron populations 1.21022 0.89815 1.03472 1.03060 1.20283 0.97201 0.91909 0.93561 1.21286 0.93810 0.98013 1.01738 1.20354 0.93699 0.95940 0.93964 1.21073 1.00417 0.92370 1.04293 1.20337 0.97252 0.92763 1.03509 1.25457 0.89964 1.15456 0.88937 1.86772 1.75216 1.40967 1.32474 0.92372 0.90758 0.70758 0.76769 1.21204 0.92904 0.98253 0.98095 1.19729 0.93537 0.93300 1.09932 1.18490 0.86880 0.84446 0.75644 1.90736 1.14838 1.87529 1.50537 1.45807 1.11034 1.05170 1.73828 1.22267 0.97985 0.80933 0.97019 0.87069 1.23734 1.02831 0.91921 0.98705 1.22217 0.92617 0.85827 0.95297 0.87013 1.44628 1.11561 1.15658 1.62806 1.18407 0.83376 0.81311 0.77158 1.90916 1.18233 1.78523 1.60737 1.86312 1.38571 1.29890 1.73513 1.22364 0.96108 0.80118 0.92316 1.22476 1.00398 1.01453 0.99402 1.21892 0.95870 0.98813 1.02870 1.22479 1.00959 1.03782 0.96574 1.24025 1.03412 0.95145 0.97818 0.91270 0.90267 0.90474 0.82863 0.89026 0.89478 0.89942 0.88364 0.77576 1.20696 1.18684 0.85402 0.75586 0.88077 0.86623 0.74382 0.91775 0.89459 0.91843 0.91205 0.88299 0.91022 0.91916 0.89415 0.92024 0.88506 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 8.73 71.24 0.62 -0.05 16 2 C -0.03 -0.16 5.91 -19.61 -0.12 -0.27 16 3 C -0.13 -0.13 9.31 22.23 0.21 0.08 16 4 C -0.04 0.04 5.87 -19.81 -0.12 -0.08 16 5 C -0.13 0.93 9.27 71.24 0.66 1.59 16 6 C -0.14 -0.12 5.26 -19.90 -0.10 -0.23 16 7 C -0.09 0.26 1.96 71.24 0.14 0.39 16 8 O -0.55 0.77 12.64 -148.98 -1.88 -1.11 16 9 Si 0.79 -3.02 30.40 68.60 2.09 -0.94 16 10 C -0.09 -0.29 8.13 22.53 0.18 -0.10 16 11 C -0.16 -1.04 5.87 -20.09 -0.12 -1.15 16 12 C 0.56 4.47 7.70 86.79 0.67 5.13 16 13 O -0.56 -7.70 12.96 -3.88 -0.05 -7.75 16 14 N -0.71 -1.26 5.30 -442.92 -2.35 -3.61 16 15 C 0.12 0.04 4.24 45.52 0.19 0.23 16 16 H 0.11 0.41 7.46 -2.39 -0.02 0.39 16 17 C -0.13 0.69 7.58 31.12 0.24 0.92 16 18 C 0.15 -0.06 4.24 45.52 0.19 0.13 16 19 H 0.11 0.34 7.47 -2.39 -0.02 0.32 16 20 N -0.69 -0.23 5.36 -567.60 -3.04 -3.27 16 21 C 0.64 4.57 8.06 129.79 1.05 5.62 16 22 O -0.59 -7.60 11.48 19.78 0.23 -7.37 16 23 O -0.37 -2.11 9.94 -55.47 -0.55 -2.66 16 24 C 0.13 0.43 1.13 -10.79 -0.01 0.42 16 25 C -0.18 -0.65 8.37 71.98 0.60 -0.05 16 26 C -0.14 0.25 8.85 71.98 0.64 0.89 16 27 C -0.18 -0.75 8.37 71.98 0.60 -0.15 16 28 C -0.16 -0.14 7.68 31.12 0.24 0.09 16 29 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.08 0.10 8.04 -2.39 -0.02 0.08 16 31 H 0.08 0.75 5.87 -2.38 -0.01 0.74 16 32 H 0.15 -0.54 8.06 -2.91 -0.02 -0.57 16 33 H 0.09 -0.80 8.14 -2.38 -0.02 -0.82 16 34 H 0.09 -0.77 8.08 -2.39 -0.02 -0.79 16 35 H 0.08 -0.81 4.96 -2.39 -0.01 -0.82 16 36 H 0.10 -0.69 7.37 -2.39 -0.02 -0.71 16 37 H 0.37 -2.47 6.84 -74.05 -0.51 -2.98 16 38 H -0.28 -0.20 6.81 99.48 0.68 0.48 16 39 H -0.26 0.38 7.11 99.48 0.71 1.08 16 40 H 0.13 0.09 3.32 -2.91 -0.01 0.08 16 41 H 0.41 -0.98 6.80 -92.70 -0.63 -1.61 16 42 H 0.10 -0.64 8.14 -2.39 -0.02 -0.66 16 43 H 0.12 -1.07 8.09 -2.39 -0.02 -1.09 16 44 H 0.42 -2.02 8.84 -92.71 -0.82 -2.84 16 45 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 46 H 0.09 0.02 8.14 -2.38 -0.02 0.00 16 47 H 0.06 0.57 5.88 -2.39 -0.01 0.56 16 48 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 49 H 0.10 -0.50 8.14 -2.38 -0.02 -0.52 16 50 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 51 H 0.06 0.61 5.88 -2.39 -0.01 0.60 16 52 H 0.09 0.06 8.14 -2.38 -0.02 0.04 16 53 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 54 H 0.10 -0.03 8.14 -2.39 -0.02 -0.05 16 55 H 0.07 0.31 8.14 -2.38 -0.02 0.29 16 Total: 0.00 -20.81 429.20 -0.81 -21.61 By element: Atomic # 1 Polarization: -7.32 SS G_CDS: -1.00 Total: -8.32 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 5.76 Total: 13.42 kcal Atomic # 7 Polarization: -1.49 SS G_CDS: -5.39 Total: -6.88 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -2.26 Total: -18.90 kcal Atomic # 14 Polarization: -3.02 SS G_CDS: 2.09 Total: -0.94 kcal Total: -20.81 -0.81 -21.61 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941094_9599494.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.232 kcal (2) G-P(sol) polarization free energy of solvation -20.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds