Wall clock time and date at job start Sun Mar 7 2021 00:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36766 * 125.80254 * 2 1 4 4 C 1.47266 * 126.94063 * 0.03217 * 3 2 1 5 5 O 1.21625 * 119.99885 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99915 * 179.97438 * 4 3 2 7 7 C 1.46500 * 119.99875 * 179.97438 * 6 4 3 8 8 H 1.09000 * 112.85014 * 23.80544 * 7 6 4 9 9 C 1.53789 * 113.61333 * 155.00207 * 7 6 4 10 10 C 1.53783 * 87.08072 * 139.98003 * 9 7 6 11 11 H 1.09000 * 113.61447 * 89.19637 * 10 9 7 12 12 N 1.46494 * 113.61480 * 220.01931 * 10 9 7 13 13 C 1.34780 * 119.99948 * 205.00300 * 12 10 9 14 14 O 1.21504 * 119.99832 * 359.97438 * 13 12 10 15 15 O 1.34633 * 119.99689 * 179.97438 * 13 12 10 16 16 C 1.45205 * 117.00060 * 179.97438 * 15 13 12 17 17 C 1.53008 * 109.46587 * 59.99840 * 16 15 13 18 18 C 1.52998 * 109.47431 * 179.97438 * 16 15 13 19 19 C 1.52996 * 109.47152 * 300.00586 * 16 15 13 20 20 C 1.53783 * 113.61531 * 252.49797 * 7 6 4 21 21 C 1.46688 * 106.11816 * 179.90224 * 3 2 1 22 22 C 1.34485 * 106.32736 * 0.36618 * 21 3 2 23 23 C 1.50706 * 125.56982 * 179.80102 * 22 21 3 24 24 O 1.42892 * 109.47246 * 64.99922 * 23 22 21 25 25 Si 1.86296 * 109.47090 * 185.00064 * 23 22 21 26 26 N 1.34662 * 125.79949 * 180.31740 * 2 1 3 27 27 H 1.09001 * 109.46953 * 269.70913 * 1 2 3 28 28 H 1.09000 * 109.47318 * 29.70511 * 1 2 3 29 29 H 1.09000 * 109.47161 * 149.71141 * 1 2 3 30 30 H 0.96995 * 120.00222 * 0.02562 * 6 4 3 31 31 H 1.08999 * 113.61320 * 254.52878 * 9 7 6 32 32 H 1.08995 * 113.61294 * 25.43115 * 9 7 6 33 33 H 0.97003 * 120.00152 * 24.99990 * 12 10 9 34 34 H 1.09002 * 109.46949 * 60.00575 * 17 16 15 35 35 H 1.08997 * 109.46889 * 180.02562 * 17 16 15 36 36 H 1.08998 * 109.47397 * 300.00202 * 17 16 15 37 37 H 1.09001 * 109.46957 * 60.00237 * 18 16 15 38 38 H 1.08997 * 109.47109 * 180.02562 * 18 16 15 39 39 H 1.08994 * 109.47131 * 300.00704 * 18 16 15 40 40 H 1.09002 * 109.47419 * 59.98926 * 19 16 15 41 41 H 1.09001 * 109.47514 * 179.97438 * 19 16 15 42 42 H 1.09001 * 109.46618 * 299.99385 * 19 16 15 43 43 H 1.09003 * 113.61250 * 334.56471 * 20 7 6 44 44 H 1.08997 * 113.61608 * 105.46678 * 20 7 6 45 45 H 1.07999 * 126.83592 * 180.14500 * 21 3 2 46 46 H 1.09002 * 109.46955 * 304.99478 * 23 22 21 47 47 H 0.96697 * 114.00204 * 60.00177 * 24 23 22 48 48 H 1.48503 * 110.00159 * 58.67804 * 25 23 22 49 49 H 1.48501 * 110.00082 * 179.97438 * 25 23 22 50 50 H 0.96996 * 124.85205 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3071 1.1092 0.0000 4 6 1.8703 2.5156 0.0007 5 8 0.6840 2.7839 0.0008 6 7 2.7850 3.5054 0.0011 7 6 2.3504 4.9044 0.0012 8 1 1.3471 5.0359 0.4063 9 6 3.3871 5.8715 0.5971 10 6 3.0057 6.8487 -0.5274 11 1 2.1822 7.5137 -0.2673 12 7 4.1512 7.5592 -1.1010 13 6 3.9732 8.7556 -1.6956 14 8 2.8626 9.2445 -1.7564 15 8 5.0261 9.4088 -2.2223 16 6 4.7602 10.6920 -2.8476 17 6 4.1582 11.6474 -1.8152 18 6 6.0675 11.2790 -3.3835 19 6 3.7746 10.5022 -4.0023 20 6 2.5727 5.6187 -1.3425 21 6 3.6883 0.6151 0.0024 22 6 3.6096 -0.7274 -0.0046 23 6 4.7820 -1.6743 -0.0095 24 8 5.5102 -1.5370 1.2123 25 14 4.1657 -3.4249 -0.1718 26 7 2.2948 -1.0922 -0.0061 27 1 -0.3633 -0.0052 1.0277 28 1 -0.3634 0.8926 -0.5092 29 1 -0.3633 -0.8874 -0.5183 30 1 3.7311 3.2914 0.0006 31 1 3.1279 6.2297 1.5934 32 1 4.4124 5.5078 0.5304 33 1 5.0379 7.1687 -1.0528 34 1 4.8603 11.7827 -0.9925 35 1 3.9581 12.6105 -2.2846 36 1 3.2268 11.2294 -1.4330 37 1 6.4968 10.5985 -4.1189 38 1 5.8679 12.2424 -3.8525 39 1 6.7693 11.4142 -2.5606 40 1 2.8433 10.0841 -3.6202 41 1 3.5746 11.4655 -4.4715 42 1 4.2035 9.8215 -4.7378 43 1 3.3755 5.1859 -1.9394 44 1 1.6562 5.7727 -1.9120 45 1 4.5891 1.2109 0.0052 46 1 5.4350 -1.4397 -0.8501 47 1 4.9902 -1.7310 2.0041 48 1 3.3796 -3.5727 -1.4230 49 1 5.3124 -4.3685 -0.1784 50 1 1.9734 -2.0074 -0.0108 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13941094_9865296.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:30:00 Heat of formation + Delta-G solvation = -83.424409 kcal Electronic energy + Delta-G solvation = -31020.322109 eV Core-core repulsion = 26629.683061 eV Total energy + Delta-G solvation = -4390.639048 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.188 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.47908 -41.92542 -40.85874 -39.40500 -37.92386 -37.68916 -35.57294 -34.87173 -33.50379 -32.78266 -31.88974 -28.91990 -28.38404 -28.31510 -26.78770 -26.50516 -25.19972 -23.72276 -22.53463 -21.62583 -21.45020 -21.00560 -20.32120 -19.15839 -18.66502 -18.05903 -17.68872 -17.20402 -17.17581 -16.90995 -16.50876 -16.17774 -15.91487 -15.77166 -15.50328 -15.36660 -15.09738 -14.95658 -14.54858 -14.47281 -14.29575 -14.07254 -13.89330 -13.79626 -13.51676 -13.37804 -13.34231 -13.14836 -12.93789 -12.88086 -12.68791 -12.58581 -12.55229 -12.46275 -12.33651 -12.23546 -12.18370 -11.96531 -11.41076 -11.12635 -10.93941 -10.47189 -10.25331 -10.07115 -9.78636 -9.14884 -5.15186 0.70445 1.13216 1.15490 1.25744 1.51512 1.71696 1.85334 2.05021 2.43751 2.51881 3.15773 3.37131 3.45366 3.51167 3.72639 3.72981 3.77867 3.83538 3.87664 3.89135 3.93045 4.11423 4.24265 4.43567 4.46074 4.51638 4.57463 4.59705 4.63168 4.66179 4.73530 4.74069 4.74927 4.78597 4.83314 4.86322 4.86367 4.95977 5.00328 5.05896 5.12757 5.24714 5.25640 5.29896 5.40295 5.57553 5.60169 5.70539 5.87315 6.38417 6.43822 6.66782 6.73090 7.32673 7.35992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.118 3.882 3 C -0.266 4.266 4 C 0.588 3.412 5 O -0.586 6.586 6 N -0.703 5.703 7 C 0.128 3.872 8 H 0.103 0.897 9 C -0.130 4.130 10 C 0.142 3.858 11 H 0.107 0.893 12 N -0.686 5.686 13 C 0.643 3.357 14 O -0.595 6.595 15 O -0.369 6.369 16 C 0.127 3.873 17 C -0.180 4.180 18 C -0.137 4.137 19 C -0.180 4.180 20 C -0.162 4.162 21 C -0.137 4.137 22 C -0.025 4.025 23 C -0.036 4.036 24 O -0.548 6.548 25 Si 0.763 3.237 26 N -0.534 5.534 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.413 0.587 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.419 0.581 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.086 0.914 42 H 0.061 0.939 43 H 0.099 0.901 44 H 0.060 0.940 45 H 0.159 0.841 46 H 0.124 0.876 47 H 0.396 0.604 48 H -0.280 1.280 49 H -0.291 1.291 50 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.017 -4.234 2.323 6.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.002 4.002 3 C -0.275 4.275 4 C 0.378 3.622 5 O -0.468 6.468 6 N -0.353 5.353 7 C 0.021 3.979 8 H 0.121 0.879 9 C -0.169 4.169 10 C 0.037 3.963 11 H 0.125 0.875 12 N -0.345 5.345 13 C 0.396 3.604 14 O -0.486 6.486 15 O -0.283 6.283 16 C 0.091 3.909 17 C -0.237 4.237 18 C -0.194 4.194 19 C -0.238 4.238 20 C -0.202 4.202 21 C -0.161 4.161 22 C -0.133 4.133 23 C -0.147 4.147 24 O -0.355 6.355 25 Si 0.668 3.332 26 N -0.134 5.134 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.107 0.893 30 H 0.250 0.750 31 H 0.114 0.886 32 H 0.137 0.863 33 H 0.257 0.743 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.117 0.883 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.080 0.920 43 H 0.117 0.883 44 H 0.079 0.921 45 H 0.176 0.824 46 H 0.141 0.859 47 H 0.246 0.754 48 H -0.207 1.207 49 H -0.218 1.218 50 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 3.183 -4.440 1.385 5.636 hybrid contribution 0.650 -0.005 -0.509 0.825 sum 3.833 -4.446 0.876 5.935 Atomic orbital electron populations 1.20619 0.86153 1.04460 1.04225 1.20565 0.94272 0.85668 0.99660 1.20188 0.94195 0.91689 1.21474 1.17656 0.85056 0.85050 0.74426 1.90734 1.18198 1.84974 1.52927 1.45550 1.10045 1.04784 1.74947 1.22108 0.99683 0.79515 0.96548 0.87864 1.23705 1.00866 0.93540 0.98795 1.22259 0.88489 0.91130 0.94408 0.87477 1.44648 1.12962 1.17498 1.59406 1.18428 0.82635 0.81935 0.77360 1.90909 1.25588 1.68673 1.63403 1.86310 1.36644 1.35628 1.69745 1.22351 0.97764 0.78592 0.92209 1.22476 1.02036 0.99994 0.99225 1.21887 0.93987 1.01663 1.01897 1.22474 0.99924 1.03837 0.97528 1.24010 1.02366 0.95936 0.97922 1.21973 0.95375 0.93198 1.05519 1.20688 0.84720 0.95687 1.12234 1.24553 0.92180 1.07148 0.90838 1.86515 1.40472 1.92849 1.15705 0.94367 0.81622 0.72685 0.84561 1.41678 1.05186 1.08763 1.57816 0.89398 0.90212 0.89281 0.74966 0.88589 0.86326 0.74343 0.91801 0.89508 0.91826 0.91206 0.88350 0.91065 0.91897 0.89475 0.92008 0.88289 0.92088 0.82370 0.85922 0.75360 1.20655 1.21783 0.73197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.04 9.89 71.24 0.70 0.74 16 2 C 0.12 0.13 7.17 41.78 0.30 0.43 16 3 C -0.27 -0.94 6.29 -19.04 -0.12 -1.06 16 4 C 0.59 3.92 7.81 86.62 0.68 4.59 16 5 O -0.59 -8.03 14.41 -4.11 -0.06 -8.09 16 6 N -0.70 0.01 5.35 -443.43 -2.37 -2.36 16 7 C 0.13 -0.03 4.24 45.52 0.19 0.16 16 8 H 0.10 0.42 7.46 -2.39 -0.02 0.40 16 9 C -0.13 0.74 7.58 31.12 0.24 0.98 16 10 C 0.14 -0.08 4.24 45.52 0.19 0.11 16 11 H 0.11 0.36 7.46 -2.39 -0.02 0.35 16 12 N -0.69 -0.07 5.36 -567.62 -3.04 -3.11 16 13 C 0.64 4.57 8.06 129.79 1.05 5.61 16 14 O -0.59 -7.72 11.48 19.83 0.23 -7.49 16 15 O -0.37 -2.11 9.94 -55.42 -0.55 -2.66 16 16 C 0.13 0.44 1.13 -10.79 -0.01 0.43 16 17 C -0.18 -0.67 8.37 71.98 0.60 -0.07 16 18 C -0.14 0.24 8.85 71.98 0.64 0.88 16 19 C -0.18 -0.75 8.37 71.98 0.60 -0.15 16 20 C -0.16 -0.06 7.68 31.12 0.24 0.18 16 21 C -0.14 0.07 10.45 23.62 0.25 0.32 16 22 C -0.02 0.07 6.09 40.98 0.25 0.32 16 23 C -0.04 0.18 2.98 71.24 0.21 0.39 16 24 O -0.55 2.21 12.88 -148.98 -1.92 0.29 16 25 Si 0.76 -5.06 30.96 68.60 2.12 -2.93 16 26 N -0.53 2.14 5.41 -171.06 -0.93 1.22 16 27 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 28 H 0.08 0.42 6.45 -2.39 -0.02 0.40 16 29 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 30 H 0.41 -2.20 7.85 -92.71 -0.73 -2.93 16 31 H 0.10 -0.60 8.14 -2.39 -0.02 -0.62 16 32 H 0.12 -1.21 8.09 -2.39 -0.02 -1.23 16 33 H 0.42 -2.20 8.84 -92.71 -0.82 -3.02 16 34 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 36 H 0.06 0.58 5.88 -2.39 -0.01 0.57 16 37 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 38 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 39 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 40 H 0.06 0.61 5.88 -2.39 -0.01 0.60 16 41 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 42 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 43 H 0.10 -0.13 8.14 -2.39 -0.02 -0.15 16 44 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 45 H 0.16 -0.64 7.70 -2.91 -0.02 -0.66 16 46 H 0.12 -0.53 7.96 -2.39 -0.02 -0.55 16 47 H 0.40 -4.57 8.70 -74.06 -0.64 -5.22 16 48 H -0.28 0.51 7.11 99.48 0.71 1.22 16 49 H -0.29 -0.42 7.11 99.48 0.71 0.29 16 50 H 0.43 -4.15 6.72 -92.71 -0.62 -4.77 16 Total: 0.00 -25.14 405.90 -2.28 -27.43 By element: Atomic # 1 Polarization: -14.38 SS G_CDS: -1.77 Total: -16.15 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 6.01 Total: 13.86 kcal Atomic # 7 Polarization: 2.08 SS G_CDS: -6.34 Total: -4.26 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -2.30 Total: -17.94 kcal Atomic # 14 Polarization: -5.06 SS G_CDS: 2.12 Total: -2.93 kcal Total: -25.14 -2.28 -27.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13941094_9865296.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.996 kcal (2) G-P(sol) polarization free energy of solvation -25.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds