Wall clock time and date at job start Sun Mar 7 2021 01:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 117.00090 * 2 1 4 4 O 1.20821 * 119.99954 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00113 * 179.97438 * 3 2 1 6 6 N 1.46503 * 112.84791 * 335.63554 * 5 3 2 7 7 C 1.34778 * 120.00230 * 292.11853 * 6 5 3 8 8 O 1.21502 * 119.99770 * 5.04160 * 7 6 5 9 9 O 1.34638 * 119.99939 * 185.04794 * 7 6 5 10 10 C 1.45195 * 116.99909 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47234 * 59.99648 * 10 9 7 12 12 C 1.52997 * 109.47413 * 179.97438 * 10 9 7 13 13 C 1.52997 * 109.47301 * 299.99895 * 10 9 7 14 14 C 1.53773 * 113.61651 * 204.44094 * 5 3 2 15 15 C 1.53782 * 87.08274 * 219.93348 * 14 5 3 16 16 H 1.08997 * 113.61450 * 270.80171 * 15 14 5 17 17 N 1.46498 * 113.61398 * 139.97987 * 15 14 5 18 18 C 1.34776 * 119.99839 * 156.53071 * 17 15 14 19 19 O 1.21514 * 120.00344 * 359.97438 * 18 17 15 20 20 C 1.48175 * 119.99650 * 179.72319 * 18 17 15 21 21 N 1.32711 * 119.72504 * 359.97438 * 20 18 17 22 22 C 1.31522 * 121.64335 * 179.97438 * 21 20 18 23 23 C 1.38564 * 120.90322 * 359.97438 * 22 21 20 24 24 C 1.50702 * 120.32245 * 179.97438 * 23 22 21 25 25 O 1.42900 * 109.46772 * 120.00667 * 24 23 22 26 26 Si 1.86293 * 109.47226 * 0.02562 * 24 23 22 27 27 C 1.38619 * 119.35120 * 0.02914 * 23 22 21 28 28 C 1.38591 * 118.48998 * 359.71774 * 27 23 22 29 29 C 1.53779 * 87.17259 * 25.39025 * 15 14 5 30 30 H 1.09002 * 109.47060 * 60.00154 * 1 2 3 31 31 H 1.09001 * 109.47513 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47620 * 300.00419 * 1 2 3 33 33 H 0.97005 * 120.00131 * 112.11667 * 6 5 3 34 34 H 1.08998 * 109.47075 * 60.00166 * 11 10 9 35 35 H 1.09002 * 109.47432 * 180.02562 * 11 10 9 36 36 H 1.09004 * 109.47136 * 299.99783 * 11 10 9 37 37 H 1.09006 * 109.46814 * 60.00004 * 12 10 9 38 38 H 1.08999 * 109.47312 * 179.97438 * 12 10 9 39 39 H 1.08998 * 109.47243 * 300.00046 * 12 10 9 40 40 H 1.09001 * 109.47655 * 59.99562 * 13 10 9 41 41 H 1.08999 * 109.47702 * 180.02562 * 13 10 9 42 42 H 1.09006 * 109.46881 * 299.99968 * 13 10 9 43 43 H 1.09002 * 113.61892 * 105.38356 * 14 5 3 44 44 H 1.09004 * 113.61690 * 334.48557 * 14 5 3 45 45 H 0.97000 * 120.00157 * 336.52692 * 17 15 14 46 46 H 1.08004 * 119.54920 * 180.02562 * 22 21 20 47 47 H 1.09002 * 109.46573 * 240.00441 * 24 23 22 48 48 H 0.96696 * 114.00008 * 299.99500 * 25 24 23 49 49 H 1.48505 * 110.00082 * 179.97438 * 26 24 23 50 50 H 1.48498 * 110.00580 * 301.31955 * 26 24 23 51 51 H 1.07997 * 120.75958 * 180.02562 * 27 23 22 52 52 H 1.08004 * 120.47639 * 180.28557 * 28 27 23 53 53 H 1.08995 * 113.61472 * 89.15637 * 29 15 14 54 54 H 1.09001 * 113.61458 * 220.06134 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 4.1985 0.0766 0.5580 7 6 4.0693 -0.2054 1.8696 8 8 3.3542 0.4821 2.5712 9 8 4.7327 -1.2488 2.4024 10 6 4.5466 -1.4930 3.8216 11 6 3.0666 -1.7595 4.1035 12 6 5.3726 -2.7102 4.2423 13 6 5.0041 -0.2670 4.6143 14 6 4.1141 2.5881 0.5835 15 6 5.1653 2.5560 -0.5385 16 1 6.0734 2.0159 -0.2706 17 7 5.4373 3.8703 -1.1257 18 6 6.6106 4.1007 -1.7475 19 8 7.4430 3.2186 -1.8208 20 6 6.8832 5.4282 -2.3468 21 7 5.9679 6.3860 -2.2684 22 6 6.1704 7.5779 -2.7865 23 6 7.3560 7.8789 -3.4374 24 6 7.5738 9.2487 -4.0267 25 8 8.7159 9.8535 -3.4167 26 14 6.0714 10.3051 -3.7147 27 6 8.3392 6.9074 -3.5422 28 6 8.1006 5.6623 -2.9823 29 6 4.1645 1.7147 -1.3481 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 4.7101 -0.5140 -0.0169 34 1 2.7407 -2.6329 3.5388 35 1 2.9268 -1.9423 5.1690 36 1 2.4778 -0.8925 3.8038 37 1 6.4271 -2.5207 4.0413 38 1 5.2333 -2.8932 5.3077 39 1 5.0464 -3.5835 3.6775 40 1 4.4154 0.6000 4.3146 41 1 4.8649 -0.4504 5.6797 42 1 6.0585 -0.0772 4.4134 43 1 4.5377 2.4796 1.5820 44 1 3.4185 3.4239 0.5064 45 1 4.7730 4.5746 -1.0669 46 1 5.4023 8.3325 -2.7027 47 1 7.7395 9.1601 -5.1004 48 1 8.6382 9.9639 -2.4592 49 1 6.2739 11.6589 -4.2905 50 1 4.8709 9.6712 -4.3163 51 1 9.2720 7.1175 -4.0443 52 1 8.8463 4.8832 -3.0411 53 1 3.4828 2.3111 -1.9543 54 1 4.6287 0.9020 -1.9068 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13976896_13287726.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:40:34 Heat of formation + Delta-G solvation = -152.950560 kcal Electronic energy + Delta-G solvation = -39920.959452 eV Core-core repulsion = 34633.488860 eV Total energy + Delta-G solvation = -5287.470593 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 408.187 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -42.76718 -41.86071 -41.51765 -40.63469 -39.61597 -38.05823 -37.85450 -37.48586 -35.74286 -35.04564 -33.96983 -33.20771 -32.85624 -29.41721 -28.37159 -28.30348 -28.09788 -27.28843 -26.66857 -25.01779 -24.08786 -24.00156 -22.63552 -21.81681 -21.21828 -20.75494 -19.42582 -19.29790 -19.15910 -18.60172 -18.22396 -17.70644 -17.49227 -17.42079 -17.07473 -16.88878 -16.65387 -16.52614 -16.42928 -16.00924 -15.94588 -15.70298 -15.38315 -15.19688 -14.92460 -14.61326 -14.50001 -14.42896 -14.34460 -14.31072 -13.81796 -13.70380 -13.60790 -13.51246 -13.34268 -13.17437 -13.10416 -12.92632 -12.87303 -12.64153 -12.54680 -12.53502 -12.36648 -12.19118 -12.17191 -11.90929 -11.82017 -11.51861 -11.40806 -11.16668 -11.05972 -10.70100 -10.59320 -10.52925 -10.35801 -10.13791 -5.00026 -0.60218 0.08659 0.77382 0.98449 1.25077 1.38615 1.49868 1.63458 1.70827 1.97550 1.98540 2.65169 2.84572 2.91787 2.95528 3.03458 3.37837 3.43143 3.51728 3.56289 3.67416 3.72803 3.78946 3.80048 3.93267 3.95316 3.97555 4.13972 4.17872 4.22362 4.27288 4.42041 4.42219 4.48578 4.54772 4.58799 4.60162 4.61132 4.68019 4.70199 4.76226 4.76869 4.85161 4.87781 4.89043 4.97767 5.00757 5.16406 5.20629 5.26994 5.29020 5.31896 5.39281 5.50192 6.20550 6.22232 6.50520 6.58854 6.71795 6.97431 7.20897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.473 3.527 4 O -0.521 6.521 5 C 0.176 3.824 6 N -0.675 5.675 7 C 0.654 3.346 8 O -0.580 6.580 9 O -0.362 6.362 10 C 0.129 3.871 11 C -0.179 4.179 12 C -0.138 4.138 13 C -0.180 4.180 14 C -0.123 4.123 15 C 0.135 3.865 16 H 0.124 0.876 17 N -0.690 5.690 18 C 0.575 3.425 19 O -0.557 6.557 20 C 0.062 3.938 21 N -0.460 5.460 22 C 0.100 3.900 23 C -0.141 4.141 24 C -0.067 4.067 25 O -0.550 6.550 26 Si 0.770 3.230 27 C -0.053 4.053 28 C -0.113 4.113 29 C -0.123 4.123 30 H 0.069 0.931 31 H 0.126 0.874 32 H 0.054 0.946 33 H 0.428 0.572 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.116 0.884 45 H 0.421 0.579 46 H 0.185 0.815 47 H 0.120 0.880 48 H 0.397 0.603 49 H -0.296 1.296 50 H -0.279 1.279 51 H 0.161 0.839 52 H 0.152 0.848 53 H 0.119 0.881 54 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.865 -0.315 0.279 0.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.315 3.685 4 O -0.409 6.409 5 C 0.087 3.913 6 N -0.338 5.338 7 C 0.408 3.592 8 O -0.470 6.470 9 O -0.276 6.276 10 C 0.092 3.908 11 C -0.236 4.236 12 C -0.195 4.195 13 C -0.237 4.237 14 C -0.162 4.162 15 C 0.029 3.971 16 H 0.142 0.858 17 N -0.340 5.340 18 C 0.361 3.639 19 O -0.434 6.434 20 C -0.075 4.075 21 N -0.171 5.171 22 C -0.060 4.060 23 C -0.144 4.144 24 C -0.178 4.178 25 O -0.358 6.358 26 Si 0.676 3.324 27 C -0.079 4.079 28 C -0.133 4.133 29 C -0.161 4.161 30 H 0.088 0.912 31 H 0.145 0.855 32 H 0.073 0.927 33 H 0.267 0.733 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.117 0.883 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.106 0.894 44 H 0.134 0.866 45 H 0.260 0.740 46 H 0.201 0.799 47 H 0.138 0.862 48 H 0.248 0.752 49 H -0.224 1.224 50 H -0.205 1.205 51 H 0.178 0.822 52 H 0.170 0.830 53 H 0.137 0.863 54 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.326 -0.158 0.164 0.398 hybrid contribution 0.453 -0.071 -0.912 1.021 sum 0.127 -0.229 -0.748 0.793 Atomic orbital electron populations 1.23521 0.74929 1.05517 1.02466 1.86510 1.24788 1.32820 1.83130 1.23888 0.91802 0.81585 0.71253 1.90672 1.66773 1.37074 1.46423 1.20832 0.83912 0.86722 0.99859 1.44060 1.56541 1.26812 1.06374 1.18143 0.78362 0.79597 0.83058 1.90940 1.42362 1.53011 1.60696 1.86324 1.65752 1.46460 1.29097 1.22379 0.96901 0.97104 0.74369 1.22461 0.94879 1.02634 1.03638 1.21895 0.99882 0.94778 1.02935 1.22479 1.01883 0.98011 1.01370 1.23674 0.97673 0.95009 0.99815 1.22406 0.97847 0.84151 0.92658 0.85783 1.45689 1.17981 1.14900 1.55470 1.18055 0.81904 0.86173 0.77740 1.90796 1.47097 1.45605 1.59950 1.21073 0.92713 0.93664 1.00071 1.67501 1.31387 1.01228 1.16986 1.22991 0.96117 0.93546 0.93331 1.21759 0.95401 0.98240 0.98995 1.25124 1.00279 0.92510 0.99897 1.86506 1.39713 1.81661 1.27970 0.93767 0.73038 0.75496 0.90137 1.21726 0.99882 0.90883 0.95421 1.22296 0.97034 0.98673 0.95340 1.23892 0.98028 1.01336 0.92870 0.91216 0.85535 0.92678 0.73252 0.91925 0.89534 0.91909 0.91095 0.88334 0.91124 0.91616 0.89551 0.91800 0.89415 0.86556 0.74028 0.79902 0.86247 0.75225 1.22414 1.20514 0.82170 0.83038 0.86258 0.86148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.05 10.56 113.37 1.20 1.24 16 2 O -0.36 -2.13 10.28 -51.40 -0.53 -2.66 16 3 C 0.47 3.20 6.48 71.24 0.46 3.66 16 4 O -0.52 -5.85 15.80 21.98 0.35 -5.50 16 5 C 0.18 0.19 1.01 3.44 0.00 0.19 16 6 N -0.68 -0.19 4.90 -551.07 -2.70 -2.89 16 7 C 0.65 3.71 7.53 129.79 0.98 4.69 16 8 O -0.58 -6.17 10.57 19.84 0.21 -5.96 16 9 O -0.36 -1.59 9.94 -55.48 -0.55 -2.14 16 10 C 0.13 0.28 1.13 -10.79 -0.01 0.27 16 11 C -0.18 -0.50 8.37 71.98 0.60 0.10 16 12 C -0.14 0.36 8.85 71.98 0.64 1.00 16 13 C -0.18 -0.42 8.37 71.98 0.60 0.18 16 14 C -0.12 -0.11 6.62 31.12 0.21 0.09 16 15 C 0.13 -0.16 4.12 45.52 0.19 0.02 16 16 H 0.12 0.01 7.50 -2.39 -0.02 -0.01 16 17 N -0.69 0.02 5.35 -442.60 -2.37 -2.35 16 18 C 0.58 2.50 7.81 86.88 0.68 3.18 16 19 O -0.56 -5.36 15.94 -3.76 -0.06 -5.42 16 20 C 0.06 0.16 6.75 41.91 0.28 0.44 16 21 N -0.46 -0.30 9.54 -184.90 -1.76 -2.06 16 22 C 0.10 -0.31 9.84 84.82 0.83 0.53 16 23 C -0.14 0.54 5.40 -19.69 -0.11 0.43 16 24 C -0.07 0.36 2.83 71.24 0.20 0.56 16 25 O -0.55 2.37 12.78 -148.98 -1.90 0.46 16 26 Si 0.77 -4.67 29.81 68.60 2.05 -2.62 16 27 C -0.05 0.13 9.76 22.45 0.22 0.35 16 28 C -0.11 -0.07 9.63 22.61 0.22 0.14 16 29 C -0.12 0.43 7.18 31.18 0.22 0.65 16 30 H 0.07 0.03 8.13 -2.39 -0.02 0.01 16 31 H 0.13 -0.49 8.14 -2.39 -0.02 -0.51 16 32 H 0.05 0.20 8.13 -2.38 -0.02 0.18 16 33 H 0.43 -2.07 8.78 -92.70 -0.81 -2.88 16 34 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 35 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 36 H 0.06 0.52 5.88 -2.38 -0.01 0.51 16 37 H 0.07 -0.20 8.14 -2.38 -0.02 -0.22 16 38 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 39 H 0.07 -0.20 8.14 -2.39 -0.02 -0.21 16 40 H 0.06 0.48 5.88 -2.39 -0.01 0.47 16 41 H 0.09 -0.07 8.14 -2.39 -0.02 -0.08 16 42 H 0.06 0.11 8.14 -2.38 -0.02 0.09 16 43 H 0.09 0.30 7.34 -2.39 -0.02 0.28 16 44 H 0.12 0.17 7.36 -2.38 -0.02 0.15 16 45 H 0.42 -0.85 8.04 -92.71 -0.75 -1.59 16 46 H 0.18 -1.46 4.89 -2.91 -0.01 -1.48 16 47 H 0.12 -0.58 7.96 -2.39 -0.02 -0.60 16 48 H 0.40 -4.77 8.70 -74.06 -0.64 -5.42 16 49 H -0.30 -0.61 7.11 99.48 0.71 0.10 16 50 H -0.28 0.44 7.11 99.48 0.71 1.15 16 51 H 0.16 -0.85 8.06 -2.91 -0.02 -0.88 16 52 H 0.15 0.06 7.64 -2.91 -0.02 0.04 16 53 H 0.12 -0.45 8.10 -2.39 -0.02 -0.47 16 54 H 0.12 -0.86 8.10 -2.39 -0.02 -0.88 16 Total: 0.00 -25.13 447.03 -1.04 -26.17 By element: Atomic # 1 Polarization: -11.59 SS G_CDS: -1.18 Total: -12.78 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 7.42 Total: 17.75 kcal Atomic # 7 Polarization: -0.46 SS G_CDS: -6.83 Total: -7.30 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -2.49 Total: -21.22 kcal Atomic # 14 Polarization: -4.67 SS G_CDS: 2.05 Total: -2.62 kcal Total: -25.13 -1.04 -26.17 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13976896_13287726.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.778 kcal (2) G-P(sol) polarization free energy of solvation -25.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds