Wall clock time and date at job start Sun Mar 7 2021 01:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34233 * 117.00121 * 2 1 4 4 O 1.20825 * 119.99898 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00208 * 180.02562 * 3 2 1 6 6 N 1.46508 * 112.84659 * 324.46021 * 5 3 2 7 7 C 1.34773 * 119.99907 * 294.08558 * 6 5 3 8 8 O 1.21506 * 120.00387 * 355.01341 * 7 6 5 9 9 O 1.34641 * 119.99665 * 174.72865 * 7 6 5 10 10 C 1.45203 * 116.99928 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.46706 * 60.00426 * 10 9 7 12 12 C 1.53000 * 109.47093 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.47545 * 300.00565 * 10 9 7 14 14 C 1.53786 * 113.61357 * 193.26796 * 5 3 2 15 15 C 1.53775 * 87.08078 * 219.92825 * 14 5 3 16 16 H 1.08996 * 113.62226 * 270.88359 * 15 14 5 17 17 N 1.46504 * 113.61577 * 140.06283 * 15 14 5 18 18 C 1.34774 * 120.00377 * 155.00109 * 17 15 14 19 19 O 1.21617 * 119.99832 * 0.02562 * 18 17 15 20 20 C 1.47375 * 120.00212 * 180.02562 * 18 17 15 21 21 C 1.36418 * 127.19386 * 179.71199 * 20 18 17 22 22 C 1.50693 * 125.80091 * 359.97438 * 21 20 18 23 23 O 1.33656 * 108.39496 * 179.83557 * 21 20 18 24 24 C 1.34217 * 110.90923 * 0.44786 * 23 21 20 25 25 C 1.50699 * 125.43435 * 179.72620 * 24 23 21 26 26 O 1.42895 * 109.47017 * 120.00047 * 25 24 23 27 27 Si 1.86298 * 109.47449 * 359.97438 * 25 24 23 28 28 C 1.34180 * 109.12541 * 359.72422 * 24 23 21 29 29 C 1.53782 * 113.69576 * 95.73202 * 5 3 2 30 30 H 1.09004 * 109.47410 * 300.00271 * 1 2 3 31 31 H 1.09001 * 109.47361 * 60.00313 * 1 2 3 32 32 H 1.09005 * 109.47054 * 180.02562 * 1 2 3 33 33 H 0.96999 * 119.99658 * 114.09621 * 6 5 3 34 34 H 1.09006 * 109.46939 * 59.99678 * 11 10 9 35 35 H 1.09002 * 109.47142 * 179.97438 * 11 10 9 36 36 H 1.09002 * 109.47002 * 299.99898 * 11 10 9 37 37 H 1.09004 * 109.46831 * 60.00427 * 12 10 9 38 38 H 1.08994 * 109.46765 * 180.02562 * 12 10 9 39 39 H 1.08996 * 109.47212 * 300.00683 * 12 10 9 40 40 H 1.09002 * 109.47168 * 59.99487 * 13 10 9 41 41 H 1.08994 * 109.47587 * 179.97438 * 13 10 9 42 42 H 1.09004 * 109.47018 * 299.99964 * 13 10 9 43 43 H 1.08996 * 113.61618 * 334.48044 * 14 5 3 44 44 H 1.09000 * 113.61146 * 105.38153 * 14 5 3 45 45 H 0.97007 * 119.99430 * 335.00562 * 17 15 14 46 46 H 1.09001 * 109.47275 * 90.00288 * 22 21 20 47 47 H 1.08993 * 109.47700 * 210.00497 * 22 21 20 48 48 H 1.09004 * 109.47283 * 330.00677 * 22 21 20 49 49 H 1.09003 * 109.46717 * 239.99947 * 25 24 23 50 50 H 0.96698 * 114.00157 * 299.99793 * 26 25 24 51 51 H 1.48496 * 109.99997 * 180.02562 * 27 25 24 52 52 H 1.48504 * 109.99744 * 301.31615 * 27 25 24 53 53 H 1.07991 * 127.02445 * 179.97438 * 28 24 23 54 54 H 1.08999 * 113.61195 * 254.53765 * 29 5 3 55 55 H 1.09000 * 113.60964 * 25.43970 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 7 4.1921 0.2074 0.7837 7 6 4.0175 0.1615 2.1193 8 8 3.4176 1.0541 2.6847 9 8 4.5028 -0.8765 2.8264 10 6 4.2771 -0.8601 4.2606 11 6 2.7729 -0.8399 4.5400 12 6 4.8963 -2.1103 4.8887 13 6 4.9247 0.3876 4.8647 14 6 4.1097 2.6767 0.3229 15 6 5.1714 2.4294 -0.7617 16 1 6.0759 1.9508 -0.3864 17 7 5.4516 3.6063 -1.5879 18 6 6.6429 3.7276 -2.2063 19 8 7.4853 2.8597 -2.0789 20 6 6.9249 4.9118 -3.0370 21 6 8.0738 5.1857 -3.7196 22 6 9.3040 4.3164 -3.7594 23 8 7.9217 6.3548 -4.3494 24 6 6.7105 6.8778 -4.1026 25 6 6.1980 8.1879 -4.6429 26 8 5.0240 7.9546 -5.4235 27 14 7.5073 8.9747 -5.7093 28 6 6.0289 6.0479 -3.2982 29 6 4.1755 1.4480 -1.4019 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 4.7323 -0.4662 0.3418 34 1 2.3115 -1.7288 4.1096 35 1 2.6034 -0.8280 5.6166 36 1 2.3322 0.0510 4.0926 37 1 5.9679 -2.1242 4.6896 38 1 4.7264 -2.0982 5.9652 39 1 4.4353 -2.9994 4.4584 40 1 4.4841 1.2785 4.4173 41 1 4.7550 0.4001 5.9412 42 1 5.9964 0.3732 4.6657 43 1 3.4157 3.4810 0.0792 44 1 4.5238 2.7633 1.3275 45 1 4.7795 4.2984 -1.6899 46 1 9.2283 3.6175 -4.5924 47 1 10.1871 4.9420 -3.8893 48 1 9.3867 3.7607 -2.8254 49 1 5.9569 8.8533 -3.8139 50 1 5.1648 7.3694 -6.1803 51 1 7.0143 10.2679 -6.2478 52 1 8.7440 9.1935 -4.9168 53 1 5.0271 6.1864 -2.9195 54 1 4.6426 0.5428 -1.7897 55 1 3.4993 1.9164 -2.1171 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13976896_13308374.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:41:00 Heat of formation + Delta-G solvation = -178.443696 kcal Electronic energy + Delta-G solvation = -41077.668466 eV Core-core repulsion = 35664.062267 eV Total energy + Delta-G solvation = -5413.606199 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 411.191 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -43.76589 -42.75861 -41.56910 -40.82484 -39.64485 -38.05468 -37.98913 -37.54024 -35.73657 -35.04053 -34.21411 -33.36733 -32.92349 -29.58101 -29.24257 -28.40322 -28.32660 -27.28085 -27.11007 -25.74861 -24.34859 -24.06166 -22.83900 -21.86078 -21.27302 -21.12388 -20.34440 -19.42850 -19.20765 -18.90561 -18.26549 -17.94705 -17.68363 -17.58071 -17.44768 -17.13845 -16.86784 -16.78816 -16.42899 -15.98185 -15.86359 -15.71099 -15.60539 -15.39998 -14.92540 -14.79672 -14.55512 -14.45879 -14.29189 -14.24945 -13.98536 -13.81747 -13.78191 -13.66614 -13.60888 -13.35966 -13.17558 -13.10995 -12.95216 -12.90070 -12.86788 -12.76697 -12.63337 -12.54524 -12.38209 -12.25011 -12.21028 -11.94009 -11.79326 -11.44036 -11.23554 -11.14104 -10.93536 -10.61589 -10.55494 -10.22185 -9.57278 -5.00683 0.22670 0.68277 0.82342 1.02938 1.18038 1.34792 1.41902 1.69265 1.77075 1.91641 2.14054 2.20294 2.84649 2.95803 3.01842 3.22506 3.40562 3.47960 3.56798 3.70024 3.71534 3.76152 3.78761 3.90822 3.97698 4.12250 4.16766 4.20818 4.29678 4.31791 4.42477 4.45607 4.49741 4.54907 4.58182 4.59480 4.63468 4.66502 4.68711 4.73759 4.73983 4.75293 4.81286 4.84505 4.85423 4.98842 5.13585 5.16154 5.17588 5.23140 5.23820 5.28431 5.36652 5.47933 5.89990 6.17486 6.41062 6.47824 6.63426 7.09377 7.17221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.470 3.530 4 O -0.519 6.519 5 C 0.176 3.824 6 N -0.674 5.674 7 C 0.652 3.348 8 O -0.581 6.581 9 O -0.361 6.361 10 C 0.128 3.872 11 C -0.179 4.179 12 C -0.138 4.138 13 C -0.180 4.180 14 C -0.125 4.125 15 C 0.138 3.862 16 H 0.121 0.879 17 N -0.702 5.702 18 C 0.595 3.405 19 O -0.565 6.565 20 C -0.270 4.270 21 C 0.089 3.911 22 C -0.085 4.085 23 O -0.172 6.172 24 C -0.060 4.060 25 C -0.024 4.024 26 O -0.539 6.539 27 Si 0.778 3.222 28 C -0.149 4.149 29 C -0.122 4.122 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.129 0.871 33 H 0.429 0.571 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.064 0.936 43 H 0.114 0.886 44 H 0.084 0.916 45 H 0.414 0.586 46 H 0.104 0.896 47 H 0.095 0.905 48 H 0.097 0.903 49 H 0.137 0.863 50 H 0.400 0.600 51 H -0.281 1.281 52 H -0.295 1.295 53 H 0.175 0.825 54 H 0.120 0.880 55 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.082 -3.643 -3.509 5.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.273 6.273 3 C 0.311 3.689 4 O -0.407 6.407 5 C 0.087 3.913 6 N -0.337 5.337 7 C 0.406 3.594 8 O -0.471 6.471 9 O -0.276 6.276 10 C 0.092 3.908 11 C -0.236 4.236 12 C -0.194 4.194 13 C -0.238 4.238 14 C -0.164 4.164 15 C 0.033 3.967 16 H 0.139 0.861 17 N -0.353 5.353 18 C 0.385 3.615 19 O -0.446 6.446 20 C -0.274 4.274 21 C 0.035 3.965 22 C -0.141 4.141 23 O -0.069 6.069 24 C -0.108 4.108 25 C -0.135 4.135 26 O -0.348 6.348 27 Si 0.683 3.317 28 C -0.168 4.168 29 C -0.161 4.161 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.147 0.853 33 H 0.268 0.732 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.117 0.883 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.132 0.868 44 H 0.103 0.897 45 H 0.251 0.749 46 H 0.123 0.877 47 H 0.114 0.886 48 H 0.116 0.884 49 H 0.154 0.846 50 H 0.251 0.749 51 H -0.207 1.207 52 H -0.222 1.222 53 H 0.192 0.808 54 H 0.138 0.862 55 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.582 -2.367 -2.914 4.074 hybrid contribution -1.053 0.139 0.838 1.353 sum 0.528 -2.228 -2.076 3.091 Atomic orbital electron populations 1.23549 0.74832 1.05679 1.02482 1.86518 1.24878 1.32671 1.83194 1.23937 0.91856 0.81616 0.71457 1.90673 1.66847 1.37166 1.45994 1.20800 0.83853 0.90027 0.96631 1.44056 1.54794 1.31450 1.03391 1.18207 0.77463 0.80822 0.82910 1.90954 1.46109 1.40012 1.70028 1.86328 1.73930 1.43516 1.23781 1.22389 0.96346 0.98226 0.73806 1.22465 0.94466 1.02902 1.03799 1.21893 1.01679 0.94474 1.01403 1.22476 1.00998 0.97682 1.02596 1.23679 0.97626 0.94260 1.00831 1.22311 0.97548 0.86493 0.90353 0.86084 1.45589 1.16428 1.23887 1.49363 1.17312 0.81674 0.84362 0.78183 1.90763 1.46926 1.42760 1.64111 1.21173 0.97124 0.99483 1.09644 1.23263 0.97444 0.84433 0.91349 1.20727 0.90650 0.96902 1.05811 1.83678 1.33937 1.30919 1.58357 1.22877 0.84280 0.99604 1.04069 1.24441 0.96028 0.92270 1.00760 1.86537 1.31998 1.71783 1.44449 0.93296 0.73439 0.80592 0.84420 1.22791 1.01171 0.92647 1.00185 1.23863 0.97935 1.02531 0.91725 0.92814 0.91120 0.85270 0.73161 0.91908 0.89462 0.92090 0.91004 0.88317 0.91087 0.91754 0.89521 0.91727 0.86760 0.89734 0.74890 0.87729 0.88606 0.88417 0.84598 0.74911 1.20738 1.22232 0.80798 0.86153 0.86067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.02 10.56 113.37 1.20 1.22 16 2 O -0.36 -1.81 10.41 -51.44 -0.54 -2.34 16 3 C 0.47 3.02 6.59 71.23 0.47 3.49 16 4 O -0.52 -5.90 15.66 21.97 0.34 -5.55 16 5 C 0.18 0.16 1.00 3.38 0.00 0.16 16 6 N -0.67 -0.25 5.02 -551.32 -2.77 -3.02 16 7 C 0.65 3.97 7.61 129.79 0.99 4.96 16 8 O -0.58 -6.56 10.42 19.82 0.21 -6.35 16 9 O -0.36 -1.70 9.94 -55.50 -0.55 -2.25 16 10 C 0.13 0.32 1.13 -10.79 -0.01 0.31 16 11 C -0.18 -0.58 8.37 71.98 0.60 0.02 16 12 C -0.14 0.34 8.85 71.98 0.64 0.98 16 13 C -0.18 -0.50 8.37 71.98 0.60 0.10 16 14 C -0.12 -0.14 6.55 31.12 0.20 0.06 16 15 C 0.14 -0.23 4.15 45.52 0.19 -0.04 16 16 H 0.12 0.03 7.46 -2.39 -0.02 0.02 16 17 N -0.70 0.91 5.35 -443.35 -2.37 -1.46 16 18 C 0.60 2.24 7.81 86.65 0.68 2.92 16 19 O -0.56 -4.98 14.45 -4.08 -0.06 -5.04 16 20 C -0.27 -0.70 6.31 -18.99 -0.12 -0.82 16 21 C 0.09 0.19 7.37 25.26 0.19 0.38 16 22 C -0.09 0.12 9.88 71.23 0.70 0.82 16 23 O -0.17 -0.23 8.89 4.42 0.04 -0.19 16 24 C -0.06 0.02 6.20 24.76 0.15 0.18 16 25 C -0.02 0.07 2.97 71.24 0.21 0.29 16 26 O -0.54 1.88 12.86 -148.98 -1.92 -0.03 16 27 Si 0.78 -2.12 32.09 68.60 2.20 0.09 16 28 C -0.15 0.06 10.46 23.65 0.25 0.31 16 29 C -0.12 0.53 7.16 31.12 0.22 0.76 16 30 H 0.05 0.17 8.13 -2.39 -0.02 0.15 16 31 H 0.07 -0.02 8.13 -2.39 -0.02 -0.04 16 32 H 0.13 -0.63 8.14 -2.38 -0.02 -0.65 16 33 H 0.43 -2.11 8.77 -92.71 -0.81 -2.92 16 34 H 0.06 0.17 8.14 -2.38 -0.02 0.15 16 35 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 36 H 0.06 0.55 5.87 -2.39 -0.01 0.54 16 37 H 0.07 -0.20 8.14 -2.38 -0.02 -0.22 16 38 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 39 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 40 H 0.06 0.51 5.89 -2.39 -0.01 0.50 16 41 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 42 H 0.06 0.13 8.14 -2.38 -0.02 0.11 16 43 H 0.11 0.16 7.32 -2.39 -0.02 0.15 16 44 H 0.08 0.39 7.20 -2.39 -0.02 0.37 16 45 H 0.41 -2.01 7.90 -92.70 -0.73 -2.75 16 46 H 0.10 -0.39 8.14 -2.39 -0.02 -0.41 16 47 H 0.10 -0.43 8.14 -2.39 -0.02 -0.45 16 48 H 0.10 0.17 6.49 -2.39 -0.02 0.15 16 49 H 0.14 -0.50 7.96 -2.39 -0.02 -0.52 16 50 H 0.40 -4.44 8.70 -74.06 -0.64 -5.09 16 51 H -0.28 -0.82 7.11 99.48 0.71 -0.11 16 52 H -0.30 -1.29 7.11 99.48 0.71 -0.59 16 53 H 0.17 -0.77 7.74 -2.92 -0.02 -0.79 16 54 H 0.12 -0.95 8.09 -2.39 -0.02 -0.97 16 55 H 0.12 -0.67 8.10 -2.39 -0.02 -0.69 16 Total: 0.00 -25.56 455.84 0.56 -25.00 By element: Atomic # 1 Polarization: -13.75 SS G_CDS: -1.19 Total: -14.94 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: 7.16 Total: 16.09 kcal Atomic # 7 Polarization: 0.67 SS G_CDS: -5.14 Total: -4.48 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -2.47 Total: -21.76 kcal Atomic # 14 Polarization: -2.12 SS G_CDS: 2.20 Total: 0.09 kcal Total: -25.56 0.56 -25.00 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13976896_13308374.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.448 kcal (2) G-P(sol) polarization free energy of solvation -25.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds