Wall clock time and date at job start Sun Mar 7 2021 01:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34225 * 117.00010 * 2 1 4 4 O 1.20825 * 120.00197 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99946 * 180.02562 * 3 2 1 6 6 N 1.46503 * 112.84713 * 335.56295 * 5 3 2 7 7 C 1.34770 * 120.00363 * 293.57892 * 6 5 3 8 8 O 1.21517 * 119.99731 * 5.00629 * 7 6 5 9 9 O 1.34632 * 120.00531 * 185.00091 * 7 6 5 10 10 C 1.45198 * 117.00427 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47140 * 60.00445 * 10 9 7 12 12 C 1.52998 * 109.47588 * 180.02562 * 10 9 7 13 13 C 1.53002 * 109.47302 * 300.00294 * 10 9 7 14 14 C 1.53784 * 113.61433 * 204.36874 * 5 3 2 15 15 C 1.53782 * 87.07690 * 220.01592 * 14 5 3 16 16 H 1.09001 * 113.61647 * 270.79521 * 15 14 5 17 17 N 1.46503 * 113.60835 * 139.98075 * 15 14 5 18 18 C 1.34781 * 119.99745 * 156.53074 * 17 15 14 19 19 O 1.21635 * 119.99755 * 359.97438 * 18 17 15 20 20 C 1.47191 * 120.00183 * 180.02562 * 18 17 15 21 21 C 1.36013 * 123.45704 * 0.22825 * 20 18 17 22 22 S 1.70445 * 110.81600 * 180.23346 * 21 20 18 23 23 C 1.75512 * 92.44458 * 359.74031 * 22 21 20 24 24 C 1.50699 * 124.71279 * 180.02562 * 23 22 21 25 25 O 1.42897 * 109.46936 * 119.97794 * 24 23 22 26 26 Si 1.86300 * 109.47115 * 359.97438 * 24 23 22 27 27 C 1.32768 * 110.57333 * 0.02562 * 23 22 21 28 28 C 1.53773 * 87.17764 * 25.39023 * 15 14 5 29 29 H 1.09008 * 109.47235 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47173 * 299.99999 * 1 2 3 31 31 H 1.09000 * 109.47663 * 59.99963 * 1 2 3 32 32 H 0.97001 * 119.99800 * 113.58678 * 6 5 3 33 33 H 1.08999 * 109.46857 * 59.99542 * 11 10 9 34 34 H 1.08997 * 109.47081 * 180.02562 * 11 10 9 35 35 H 1.09008 * 109.46668 * 300.00004 * 11 10 9 36 36 H 1.09002 * 109.47120 * 59.99987 * 12 10 9 37 37 H 1.08997 * 109.47415 * 179.97438 * 12 10 9 38 38 H 1.09003 * 109.47294 * 300.00972 * 12 10 9 39 39 H 1.09004 * 109.46998 * 60.00101 * 13 10 9 40 40 H 1.09006 * 109.47367 * 179.97438 * 13 10 9 41 41 H 1.08996 * 109.47247 * 300.00008 * 13 10 9 42 42 H 1.08995 * 113.61411 * 105.46991 * 14 5 3 43 43 H 1.08993 * 113.68837 * 334.57833 * 14 5 3 44 44 H 0.96996 * 120.00123 * 336.52649 * 17 15 14 45 45 H 1.08004 * 124.59327 * 359.97338 * 21 20 18 46 46 H 1.09003 * 109.47100 * 239.97548 * 24 23 22 47 47 H 0.96703 * 113.99745 * 180.02562 * 25 24 23 48 48 H 1.48499 * 109.99955 * 298.68239 * 26 24 23 49 49 H 1.48504 * 109.99795 * 60.00366 * 26 24 23 50 50 H 1.08001 * 123.45905 * 179.97438 * 27 23 22 51 51 H 1.09004 * 113.61917 * 89.15040 * 28 15 14 52 52 H 1.08994 * 113.61903 * 220.05740 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 4.1989 0.0770 0.5574 7 6 4.0461 -0.2196 1.8632 8 8 3.3108 0.4543 2.5573 9 8 4.7081 -1.2626 2.3986 10 6 4.4961 -1.5230 3.8112 11 6 3.0132 -1.8056 4.0608 12 6 5.3254 -2.7364 4.2363 13 6 4.9265 -0.3012 4.6254 14 6 4.1145 2.5887 0.5809 15 6 5.1636 2.5566 -0.5432 16 1 6.0725 2.0172 -0.2769 17 7 5.4336 3.8709 -1.1314 18 6 6.6056 4.1018 -1.7557 19 8 7.4391 3.2191 -1.8303 20 6 6.8772 5.4225 -2.3462 21 6 5.9990 6.4600 -2.2990 22 16 6.6375 7.8303 -3.0862 23 6 8.1298 6.9979 -3.4869 24 6 9.2792 7.6130 -4.2430 25 8 10.4532 7.5870 -3.4287 26 14 8.8638 9.3762 -4.6778 27 6 8.1053 5.7510 -3.0314 28 6 4.1617 1.7146 -1.3505 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 4.7278 -0.5026 -0.0129 33 1 2.7066 -2.6760 3.4807 34 1 2.8540 -2.0006 5.1213 35 1 2.4227 -0.9407 3.7580 36 1 6.3818 -2.5348 4.0586 37 1 5.1666 -2.9316 5.2968 38 1 5.0192 -3.6071 3.6563 39 1 4.3359 0.5635 4.3227 40 1 4.7669 -0.4966 5.6858 41 1 5.9829 -0.1000 4.4476 42 1 4.5401 2.4807 1.5784 43 1 3.4193 3.4247 0.5056 44 1 4.7690 4.5749 -1.0715 45 1 5.0269 6.4196 -1.8302 46 1 9.4581 7.0459 -5.1566 47 1 11.2343 7.9683 -3.8525 48 1 7.6631 9.4147 -5.5507 49 1 8.6177 10.1599 -3.4406 50 1 8.9187 5.0528 -3.1633 51 1 3.4783 2.3103 -1.9557 52 1 4.6251 0.9020 -1.9099 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13976896_6894386.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:44:35 Heat of formation + Delta-G solvation = -159.115877 kcal Electronic energy + Delta-G solvation = -38194.473614 eV Core-core repulsion = 33061.313831 eV Total energy + Delta-G solvation = -5133.159784 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 413.148 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.78723 -41.58414 -41.15252 -39.93731 -38.68380 -38.06924 -37.51810 -37.16786 -35.75808 -35.05077 -33.55460 -31.82774 -29.39544 -28.39850 -28.32835 -27.38737 -27.21028 -26.99484 -25.48897 -24.04476 -22.73657 -21.95245 -21.25127 -20.90373 -20.39559 -19.47063 -19.30678 -18.67456 -18.37198 -18.34822 -18.10965 -17.53215 -17.47328 -17.12276 -16.76288 -16.70490 -16.19769 -16.15162 -15.73089 -15.64404 -15.39448 -15.06372 -14.91544 -14.59758 -14.48187 -14.33960 -14.01047 -13.93250 -13.86807 -13.81942 -13.69790 -13.56862 -13.36850 -13.19424 -13.12519 -12.95368 -12.89898 -12.71389 -12.64243 -12.56420 -12.40673 -12.35030 -12.22246 -12.11276 -11.93184 -11.83924 -11.43928 -11.23734 -11.16067 -10.57366 -10.49799 -10.33785 -9.99740 -9.62361 -5.19688 -0.45901 0.27687 0.62666 0.72673 0.75406 0.96163 1.20205 1.36728 1.59714 1.68735 1.89346 2.02997 2.14132 2.82174 2.90532 3.00322 3.32436 3.35723 3.54065 3.68798 3.70104 3.76318 3.77405 3.90643 3.92191 3.98547 4.15567 4.18107 4.20330 4.24397 4.38108 4.43243 4.47309 4.52302 4.58093 4.58483 4.61709 4.65886 4.66555 4.74135 4.74225 4.82773 4.85226 4.90577 4.96565 5.07053 5.14009 5.18177 5.24229 5.27266 5.29347 5.47399 6.17165 6.31431 6.47742 6.84829 7.00413 7.17658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.474 3.526 4 O -0.522 6.522 5 C 0.175 3.825 6 N -0.676 5.676 7 C 0.654 3.346 8 O -0.581 6.581 9 O -0.362 6.362 10 C 0.128 3.872 11 C -0.178 4.178 12 C -0.138 4.138 13 C -0.180 4.180 14 C -0.124 4.124 15 C 0.137 3.863 16 H 0.119 0.881 17 N -0.701 5.701 18 C 0.584 3.416 19 O -0.569 6.569 20 C -0.177 4.177 21 C -0.184 4.184 22 S 0.180 5.820 23 C -0.212 4.212 24 C -0.047 4.047 25 O -0.564 6.564 26 Si 0.756 3.244 27 C -0.067 4.067 28 C -0.122 4.122 29 H 0.126 0.874 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.428 0.572 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.085 0.915 43 H 0.119 0.881 44 H 0.416 0.584 45 H 0.205 0.795 46 H 0.103 0.897 47 H 0.406 0.594 48 H -0.261 1.261 49 H -0.275 1.275 50 H 0.146 0.854 51 H 0.123 0.877 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.264 1.022 -3.959 4.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.316 3.684 4 O -0.410 6.410 5 C 0.086 3.914 6 N -0.339 5.339 7 C 0.408 3.592 8 O -0.470 6.470 9 O -0.277 6.277 10 C 0.092 3.908 11 C -0.236 4.236 12 C -0.195 4.195 13 C -0.238 4.238 14 C -0.163 4.163 15 C 0.032 3.968 16 H 0.137 0.863 17 N -0.352 5.352 18 C 0.371 3.629 19 O -0.449 6.449 20 C -0.195 4.195 21 C -0.322 4.322 22 S 0.446 5.554 23 C -0.328 4.328 24 C -0.159 4.159 25 O -0.374 6.374 26 Si 0.658 3.342 27 C -0.097 4.097 28 C -0.161 4.161 29 H 0.144 0.856 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.267 0.733 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.117 0.883 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.104 0.896 43 H 0.137 0.863 44 H 0.254 0.746 45 H 0.222 0.778 46 H 0.121 0.879 47 H 0.258 0.742 48 H -0.187 1.187 49 H -0.201 1.201 50 H 0.164 0.836 51 H 0.141 0.859 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.260 2.769 -3.384 4.380 hybrid contribution -0.202 -1.904 0.554 1.994 sum -0.462 0.864 -2.830 2.995 Atomic orbital electron populations 1.23523 0.74883 1.05529 1.02474 1.86511 1.24824 1.32834 1.83090 1.23840 0.91727 0.81594 0.71198 1.90664 1.66760 1.37031 1.46531 1.20844 0.83995 0.86677 0.99889 1.44070 1.55572 1.27203 1.07015 1.18142 0.78497 0.79537 0.82974 1.90941 1.41385 1.53780 1.60938 1.86323 1.65242 1.46542 1.29564 1.22386 0.96880 0.96969 0.74531 1.22456 0.94766 1.02614 1.03727 1.21896 0.99842 0.94825 1.02933 1.22481 1.01935 0.98082 1.01259 1.23693 0.97673 0.95158 0.99734 1.22327 0.97682 0.84233 0.92586 0.86292 1.45613 1.17982 1.14931 1.56679 1.17726 0.81499 0.86449 0.77183 1.90798 1.47123 1.46783 1.60155 1.20168 0.96489 0.94936 1.07916 1.26146 1.05196 0.97227 1.03626 1.83244 1.08349 1.13721 1.50122 1.23803 1.01084 0.97829 1.10052 1.24271 0.85143 1.11721 0.94776 1.86468 1.20240 1.86092 1.44629 0.93658 0.85074 0.74683 0.80792 1.21053 0.96697 0.95639 0.96262 1.23901 0.98024 1.01352 0.92813 0.85562 0.92706 0.91129 0.73290 0.91873 0.89503 0.91910 0.91156 0.88288 0.91074 0.91662 0.89502 0.91887 0.89640 0.86273 0.74643 0.77810 0.87947 0.74234 1.18663 1.20086 0.83649 0.85903 0.86390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.04 10.56 113.37 1.20 1.24 16 2 O -0.36 -2.15 10.25 -51.37 -0.53 -2.68 16 3 C 0.47 3.11 6.38 71.24 0.45 3.57 16 4 O -0.52 -5.53 15.81 21.97 0.35 -5.18 16 5 C 0.18 0.20 1.01 3.44 0.00 0.20 16 6 N -0.68 -0.56 4.91 -551.06 -2.71 -3.27 16 7 C 0.65 4.09 7.51 129.79 0.97 5.06 16 8 O -0.58 -6.43 10.62 19.79 0.21 -6.22 16 9 O -0.36 -1.84 9.94 -55.42 -0.55 -2.39 16 10 C 0.13 0.35 1.13 -10.79 -0.01 0.34 16 11 C -0.18 -0.56 8.37 71.98 0.60 0.04 16 12 C -0.14 0.28 8.85 71.98 0.64 0.92 16 13 C -0.18 -0.55 8.37 71.98 0.60 0.06 16 14 C -0.12 -0.08 6.65 31.12 0.21 0.13 16 15 C 0.14 -0.14 4.12 45.51 0.19 0.05 16 16 H 0.12 0.18 7.50 -2.39 -0.02 0.17 16 17 N -0.70 0.70 5.33 -443.52 -2.36 -1.67 16 18 C 0.58 3.42 7.79 86.59 0.67 4.10 16 19 O -0.57 -7.62 16.41 -4.14 -0.07 -7.68 16 20 C -0.18 -0.79 5.98 -19.87 -0.12 -0.90 16 21 C -0.18 0.14 10.38 67.30 0.70 0.84 16 22 S 0.18 0.24 20.18 -56.49 -1.14 -0.90 16 23 C -0.21 -0.84 5.72 24.51 0.14 -0.70 16 24 C -0.05 0.06 2.94 71.24 0.21 0.26 16 25 O -0.56 0.09 12.82 -148.98 -1.91 -1.82 16 26 Si 0.76 -2.91 30.91 68.60 2.12 -0.79 16 27 C -0.07 -0.45 9.91 22.67 0.22 -0.23 16 28 C -0.12 0.44 7.18 31.18 0.22 0.66 16 29 H 0.13 -0.48 8.14 -2.38 -0.02 -0.50 16 30 H 0.05 0.20 8.13 -2.39 -0.02 0.18 16 31 H 0.07 0.02 8.13 -2.39 -0.02 0.00 16 32 H 0.43 -1.74 8.78 -92.71 -0.81 -2.55 16 33 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 34 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H 0.06 0.54 5.88 -2.38 -0.01 0.53 16 36 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 37 H 0.10 -0.52 8.14 -2.39 -0.02 -0.54 16 38 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 39 H 0.06 0.52 5.88 -2.38 -0.01 0.51 16 40 H 0.09 -0.01 8.14 -2.38 -0.02 -0.03 16 41 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 42 H 0.08 0.30 7.46 -2.39 -0.02 0.28 16 43 H 0.12 0.02 7.36 -2.39 -0.02 0.00 16 44 H 0.42 -2.60 7.21 -92.71 -0.67 -3.27 16 45 H 0.20 -1.70 7.01 -2.91 -0.02 -1.72 16 46 H 0.10 -0.52 7.96 -2.39 -0.02 -0.54 16 47 H 0.41 -4.49 8.74 -74.06 -0.65 -5.14 16 48 H -0.26 0.01 7.11 99.48 0.71 0.71 16 49 H -0.27 -0.78 7.11 99.48 0.71 -0.07 16 50 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 51 H 0.12 -0.59 8.10 -2.39 -0.02 -0.61 16 52 H 0.12 -0.78 8.10 -2.39 -0.02 -0.80 16 Total: 0.00 -28.48 443.68 -0.78 -29.26 By element: Atomic # 1 Polarization: -11.20 SS G_CDS: -1.09 Total: -12.29 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 6.91 Total: 15.63 kcal Atomic # 7 Polarization: 0.13 SS G_CDS: -5.07 Total: -4.94 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -2.50 Total: -25.97 kcal Atomic # 14 Polarization: -2.91 SS G_CDS: 2.12 Total: -0.79 kcal Atomic # 16 Polarization: 0.24 SS G_CDS: -1.14 Total: -0.90 kcal Total: -28.48 -0.78 -29.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13976896_6894386.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.858 kcal (2) G-P(sol) polarization free energy of solvation -28.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds