Wall clock time and date at job start Sat Mar 6 2021 23:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47232 * 2 1 4 4 C 1.52998 * 109.46885 * 240.00077 * 2 1 3 5 5 Si 1.86296 * 109.46837 * 120.00085 * 2 1 3 6 6 C 1.86299 * 109.47338 * 299.99843 * 5 2 1 7 7 C 1.86302 * 109.47073 * 179.97438 * 5 2 1 8 8 O 1.63101 * 109.47107 * 60.00134 * 5 2 1 9 9 C 1.42904 * 113.99860 * 179.97438 * 8 5 2 10 10 C 1.53002 * 109.46938 * 179.97438 * 9 8 5 11 11 C 1.53947 * 113.73874 * 174.99950 * 10 9 8 12 12 N 1.47584 * 86.11565 * 137.95347 * 11 10 9 13 13 C 1.34776 * 134.49098 * 155.35611 * 12 11 10 14 14 O 1.21701 * 120.00147 * 0.02562 * 13 12 11 15 15 C 1.46673 * 119.99920 * 179.97438 * 13 12 11 16 16 C 1.37872 * 126.23400 * 180.02562 * 15 13 12 17 17 C 1.39839 * 107.08557 * 179.97438 * 16 15 13 18 18 C 1.50703 * 126.06558 * 179.97438 * 17 16 15 19 19 O 1.42894 * 109.47114 * 65.00102 * 18 17 16 20 20 Si 1.86302 * 109.46806 * 185.00107 * 18 17 16 21 21 H 1.48503 * 109.47333 * 60.00071 * 20 18 17 22 22 H 1.48497 * 109.46948 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47188 * 300.00092 * 20 18 17 24 24 C 1.35448 * 107.86377 * 0.02562 * 17 16 15 25 25 N 1.35537 * 108.87296 * 359.76455 * 24 17 16 26 26 C 1.47576 * 91.01498 * 335.35788 * 12 11 10 27 27 H 1.08999 * 109.46834 * 300.00251 * 1 2 3 28 28 H 1.08999 * 109.46612 * 59.99617 * 1 2 3 29 29 H 1.08999 * 109.47263 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46726 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47261 * 300.00148 * 3 2 1 32 32 H 1.09001 * 109.47016 * 59.99765 * 3 2 1 33 33 H 1.08999 * 109.47179 * 300.00062 * 4 2 1 34 34 H 1.09002 * 109.47616 * 60.00023 * 4 2 1 35 35 H 1.08997 * 109.47090 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.47074 * 180.02562 * 6 5 2 37 37 H 1.09006 * 109.46834 * 299.99848 * 6 5 2 38 38 H 1.08997 * 109.47234 * 59.99780 * 6 5 2 39 39 H 1.09001 * 109.47408 * 300.00065 * 7 5 2 40 40 H 1.08999 * 109.46931 * 60.00061 * 7 5 2 41 41 H 1.09000 * 109.47355 * 180.02562 * 7 5 2 42 42 H 1.09004 * 109.47342 * 59.99809 * 9 8 5 43 43 H 1.08997 * 109.47102 * 299.99639 * 9 8 5 44 44 H 1.08999 * 113.01600 * 43.34083 * 10 9 8 45 45 H 1.09001 * 113.76955 * 252.25382 * 11 10 9 46 46 H 1.08997 * 113.77064 * 23.65458 * 11 10 9 47 47 H 1.08002 * 126.46059 * 359.97438 * 16 15 13 48 48 H 1.09003 * 109.47216 * 304.99888 * 18 17 16 49 49 H 0.96700 * 113.99892 * 59.99850 * 19 18 17 50 50 H 1.08005 * 125.56390 * 179.97438 * 24 17 16 51 51 H 0.97006 * 125.67631 * 180.26301 * 25 24 17 52 52 H 1.09003 * 113.77250 * 270.33779 * 26 12 11 53 53 H 1.08995 * 113.76824 * 138.94137 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8790 1.5208 8 8 1.6073 -2.4160 1.5210 9 6 2.0294 -3.1817 2.6514 10 6 1.4634 -4.5994 2.5470 11 6 1.9578 -5.5471 3.6548 12 7 0.5659 -6.0332 3.7213 13 6 -0.0155 -7.1815 4.1209 14 8 0.6688 -8.0955 4.5424 15 6 -1.4730 -7.3293 4.0490 16 6 -2.1988 -8.4407 4.4218 17 6 -3.5462 -8.1491 4.1874 18 6 -4.7111 -9.0697 4.4455 19 8 -4.8219 -9.3158 5.8487 20 14 -6.2791 -8.2749 3.8286 21 1 -6.1640 -8.0192 2.3703 22 1 -7.4269 -9.1823 4.0823 23 1 -6.4962 -6.9900 4.5408 24 6 -3.6183 -6.8929 3.6861 25 7 -2.3657 -6.3820 3.6016 26 6 0.0664 -4.7568 3.1743 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1393 35 1 3.1300 -0.7216 -1.2491 36 1 1.8937 -0.5137 3.9322 37 1 1.8935 1.0276 3.0423 38 1 0.4400 0.0000 3.0422 39 1 4.3770 -1.3930 0.6308 40 1 4.3777 0.1486 1.5206 41 1 4.3773 -1.3932 2.4105 42 1 1.6653 -2.7119 3.5651 43 1 3.1182 -3.2256 2.6744 44 1 1.5437 -5.0175 1.5436 45 1 2.6687 -6.2966 3.3069 46 1 2.2873 -5.0333 4.5579 47 1 -1.8016 -9.3628 4.8199 48 1 -4.5517 -10.0128 3.9226 49 1 -4.9652 -8.5190 6.3776 50 1 -4.5261 -6.3805 3.4032 51 1 -2.1365 -5.4966 3.2783 52 1 -0.1598 -4.0108 3.9361 53 1 -0.7328 -4.8752 2.4426 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14186584_10543058.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:41:23 Heat of formation + Delta-G solvation = -82.644549 kcal Electronic energy + Delta-G solvation = -29678.560393 eV Core-core repulsion = 25675.620303 eV Total energy + Delta-G solvation = -4002.940090 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.57834 -41.11081 -39.10729 -37.63236 -37.41928 -36.78798 -32.88318 -31.83185 -30.48709 -29.32752 -29.01575 -27.81979 -27.57154 -27.33361 -27.08063 -26.05085 -23.49228 -21.42815 -21.06715 -20.65967 -20.37817 -19.12245 -17.78034 -17.61022 -17.49978 -17.19444 -16.55372 -16.30243 -15.97123 -15.85387 -15.55583 -15.43638 -14.91342 -14.82216 -14.72630 -14.60277 -14.31602 -14.24927 -14.05197 -13.84677 -13.67931 -13.58553 -13.47335 -13.34714 -13.25902 -13.12295 -12.91888 -12.90208 -12.49196 -12.36481 -12.34185 -12.12922 -12.04017 -11.75007 -11.67984 -11.66235 -11.48087 -11.32807 -11.02572 -10.31383 -10.25689 -10.04113 -10.01552 -9.91602 -9.30377 0.31584 1.28679 1.46664 1.48602 1.56854 1.64279 1.64915 1.84464 2.03103 2.05550 2.17480 2.22243 2.51369 3.23250 3.38654 3.71970 3.86284 3.91549 3.96161 4.06842 4.15811 4.16006 4.24367 4.29309 4.35965 4.40569 4.48961 4.52580 4.56685 4.61816 4.71193 4.78345 4.80607 4.81253 4.83286 4.84697 4.85128 4.87089 4.92596 5.01311 5.03525 5.12403 5.13275 5.17800 5.25178 5.38484 5.45055 5.47469 5.56611 5.58679 5.64929 5.69964 5.73772 6.35363 6.46317 6.85626 6.92405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.387 4.387 3 C -0.142 4.142 4 C -0.137 4.137 5 Si 1.331 2.669 6 C -0.519 4.519 7 C -0.526 4.526 8 O -0.632 6.632 9 C 0.083 3.917 10 C -0.104 4.104 11 C 0.106 3.894 12 N -0.652 5.652 13 C 0.604 3.396 14 O -0.581 6.581 15 C -0.066 4.066 16 C -0.100 4.100 17 C -0.221 4.221 18 C -0.058 4.058 19 O -0.562 6.562 20 Si 0.996 3.004 21 H -0.251 1.251 22 H -0.282 1.282 23 H -0.238 1.238 24 C 0.043 3.957 25 N -0.520 5.520 26 C 0.092 3.908 27 H 0.062 0.938 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.044 0.956 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.111 0.889 45 H 0.080 0.920 46 H 0.109 0.891 47 H 0.129 0.871 48 H 0.107 0.893 49 H 0.387 0.613 50 H 0.205 0.795 51 H 0.431 0.569 52 H 0.119 0.881 53 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.598 8.888 -1.831 9.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.429 4.429 3 C -0.199 4.199 4 C -0.195 4.195 5 Si 1.460 2.540 6 C -0.621 4.621 7 C -0.626 4.626 8 O -0.592 6.592 9 C 0.008 3.992 10 C -0.123 4.123 11 C -0.016 4.016 12 N -0.386 5.386 13 C 0.396 3.604 14 O -0.462 6.462 15 C -0.179 4.179 16 C -0.127 4.127 17 C -0.228 4.228 18 C -0.168 4.168 19 O -0.369 6.369 20 Si 0.817 3.183 21 H -0.174 1.174 22 H -0.207 1.207 23 H -0.161 1.161 24 C -0.095 4.095 25 N -0.119 5.119 26 C -0.030 4.030 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.129 0.871 45 H 0.099 0.901 46 H 0.127 0.873 47 H 0.147 0.853 48 H 0.125 0.875 49 H 0.236 0.764 50 H 0.222 0.778 51 H 0.274 0.726 52 H 0.137 0.863 53 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.027 8.002 -2.253 8.557 hybrid contribution 0.954 0.799 0.185 1.258 sum -1.073 8.801 -2.068 9.104 Atomic orbital electron populations 1.21542 0.94051 1.02018 1.01731 1.26017 1.00605 1.02801 1.13469 1.21610 1.01146 0.95070 1.02105 1.21544 1.00868 1.00165 0.96888 0.75906 0.61803 0.52714 0.63610 1.27112 1.07134 1.09683 1.18153 1.27210 1.26135 1.04744 1.04540 1.85346 1.79426 1.46290 1.48135 1.22177 0.99558 0.89908 0.87592 1.23087 0.94498 0.94963 0.99797 1.23435 0.83933 0.95186 0.99037 1.49989 1.11552 1.13298 1.63745 1.16933 0.85612 0.81484 0.76363 1.90840 1.64520 1.41535 1.49258 1.20136 0.88960 0.93344 1.15412 1.21242 0.93013 0.97313 1.01165 1.20013 0.95105 0.96882 1.10784 1.24586 1.03421 1.02915 0.85831 1.86477 1.95460 1.37647 1.17302 0.85104 0.74001 0.79126 0.80027 1.17416 1.20741 1.16130 1.22360 0.88781 0.94936 1.03413 1.42196 1.05630 1.15090 1.48971 1.23834 0.98825 0.82996 0.97311 0.91914 0.93835 0.91967 0.92092 0.93457 0.91737 0.92203 0.93729 0.92402 0.90708 0.90847 0.90719 0.91417 0.90857 0.90841 0.89939 0.90491 0.87052 0.90139 0.87267 0.85271 0.87473 0.76425 0.77806 0.72560 0.86343 0.88741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.51 7.85 71.98 0.56 1.07 16 2 C -0.39 1.56 0.53 -10.79 -0.01 1.56 16 3 C -0.14 0.52 7.85 71.98 0.56 1.09 16 4 C -0.14 0.32 7.85 71.98 0.56 0.88 16 5 Si 1.33 -9.85 8.45 68.60 0.58 -9.27 16 6 C -0.52 3.75 8.50 113.37 0.96 4.72 16 7 C -0.53 2.80 8.50 113.37 0.96 3.76 16 8 O -0.63 4.36 8.56 -148.98 -1.28 3.09 16 9 C 0.08 -0.82 4.98 71.98 0.36 -0.46 16 10 C -0.10 0.82 4.20 -10.13 -0.04 0.78 16 11 C 0.11 -0.42 8.40 86.48 0.73 0.31 16 12 N -0.65 -0.31 3.61 -841.33 -3.03 -3.34 16 13 C 0.60 5.56 8.02 86.45 0.69 6.25 16 14 O -0.58 -10.91 17.61 -4.35 -0.08 -10.98 16 15 C -0.07 -0.37 7.01 40.35 0.28 -0.09 16 16 C -0.10 -0.81 10.59 22.57 0.24 -0.57 16 17 C -0.22 -0.46 5.43 -20.12 -0.11 -0.56 16 18 C -0.06 -0.03 3.02 71.24 0.22 0.18 16 19 O -0.56 -1.82 12.88 -148.98 -1.92 -3.74 16 20 Si 1.00 -3.40 25.89 68.60 1.78 -1.63 16 21 H -0.25 0.89 7.11 99.48 0.71 1.60 16 22 H -0.28 -0.44 7.11 99.48 0.71 0.27 16 23 H -0.24 1.39 7.11 99.48 0.71 2.10 16 24 C 0.04 -0.15 10.45 83.48 0.87 0.73 16 25 N -0.52 1.46 5.88 -183.62 -1.08 0.38 16 26 C 0.09 -0.78 6.92 86.48 0.60 -0.18 16 27 H 0.06 -0.34 7.79 -2.39 -0.02 -0.36 16 28 H 0.04 -0.08 8.14 -2.39 -0.02 -0.10 16 29 H 0.06 -0.27 7.97 -2.39 -0.02 -0.29 16 30 H 0.06 -0.28 7.79 -2.39 -0.02 -0.30 16 31 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.06 -0.34 7.79 -2.39 -0.02 -0.36 16 33 H 0.06 -0.14 7.97 -2.39 -0.02 -0.16 16 34 H 0.04 -0.03 8.14 -2.39 -0.02 -0.05 16 35 H 0.06 -0.18 7.79 -2.39 -0.02 -0.20 16 36 H 0.07 -0.64 7.48 -2.39 -0.02 -0.66 16 37 H 0.07 -0.47 7.79 -2.38 -0.02 -0.49 16 38 H 0.07 -0.54 7.79 -2.39 -0.02 -0.56 16 39 H 0.07 -0.27 7.79 -2.39 -0.02 -0.29 16 40 H 0.07 -0.36 7.79 -2.39 -0.02 -0.38 16 41 H 0.07 -0.48 7.48 -2.39 -0.02 -0.50 16 42 H 0.08 -1.13 6.91 -2.38 -0.02 -1.15 16 43 H 0.08 -0.90 7.21 -2.39 -0.02 -0.92 16 44 H 0.11 -0.69 8.14 -2.39 -0.02 -0.71 16 45 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 46 H 0.11 -0.84 8.10 -2.39 -0.02 -0.86 16 47 H 0.13 1.49 8.06 -2.91 -0.02 1.47 16 48 H 0.11 0.12 7.96 -2.39 -0.02 0.10 16 49 H 0.39 -1.55 8.70 -74.06 -0.64 -2.20 16 50 H 0.21 -2.17 6.21 -2.91 -0.02 -2.19 16 51 H 0.43 -4.00 5.78 -92.70 -0.54 -4.53 16 52 H 0.12 -1.54 7.89 -2.39 -0.02 -1.56 16 53 H 0.09 -1.05 6.51 -2.39 -0.02 -1.07 16 Total: 0.00 -23.52 421.53 2.89 -20.62 By element: Atomic # 1 Polarization: -15.06 SS G_CDS: 0.47 Total: -14.59 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: 7.45 Total: 19.46 kcal Atomic # 7 Polarization: 1.15 SS G_CDS: -4.11 Total: -2.96 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -3.27 Total: -11.64 kcal Atomic # 14 Polarization: -13.25 SS G_CDS: 2.36 Total: -10.89 kcal Total: -23.52 2.89 -20.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14186584_10543058.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.023 kcal (2) G-P(sol) polarization free energy of solvation -23.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds