Wall clock time and date at job start Sat Mar 6 2021 23:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35534 * 125.67704 * 2 1 4 4 C 1.35456 * 108.86884 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.06387 * 180.02562 * 4 3 2 6 6 O 1.42897 * 109.47230 * 119.97330 * 5 4 3 7 7 Si 1.86303 * 109.47173 * 359.96981 * 5 4 3 8 8 H 1.48500 * 109.46771 * 60.00495 * 7 5 4 9 9 H 1.48501 * 109.46760 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47417 * 300.00146 * 7 5 4 11 11 C 1.39830 * 107.86613 * 359.74061 * 4 3 2 12 12 C 1.37656 * 125.67496 * 179.97438 * 2 1 3 13 13 C 1.46672 * 126.23813 * 0.02562 * 12 2 1 14 14 O 1.21698 * 119.99765 * 5.08945 * 13 12 2 15 15 N 1.34771 * 120.00108 * 185.09566 * 13 12 2 16 16 C 1.47588 * 134.49308 * 174.57163 * 15 13 12 17 17 C 1.53935 * 86.11591 * 155.35936 * 16 15 13 18 18 C 1.53001 * 113.74219 * 137.95659 * 17 16 15 19 19 O 1.42899 * 109.47189 * 174.99806 * 18 17 16 20 20 Si 1.63100 * 113.99922 * 179.97438 * 19 18 17 21 21 C 1.86298 * 109.46932 * 299.99578 * 20 19 18 22 22 C 1.86304 * 109.47379 * 59.99754 * 20 19 18 23 23 C 1.86303 * 109.47183 * 179.97438 * 20 19 18 24 24 C 1.53005 * 109.46908 * 59.99737 * 23 20 19 25 25 C 1.52996 * 109.47484 * 179.97438 * 23 20 19 26 26 C 1.52998 * 109.47175 * 300.00115 * 23 20 19 27 27 C 1.47576 * 134.49579 * 354.56876 * 15 13 12 28 28 H 1.08993 * 109.47192 * 274.86491 * 1 2 3 29 29 H 1.09001 * 109.47021 * 34.86612 * 1 2 3 30 30 H 1.09004 * 109.46947 * 154.86198 * 1 2 3 31 31 H 1.07998 * 125.56559 * 359.97438 * 3 2 1 32 32 H 1.09004 * 109.46580 * 239.97676 * 5 4 3 33 33 H 0.96695 * 113.99912 * 299.99986 * 6 5 4 34 34 H 1.07995 * 126.45896 * 180.26676 * 11 4 3 35 35 H 1.08998 * 113.76607 * 41.05006 * 16 15 13 36 36 H 1.09004 * 113.76320 * 269.66328 * 16 15 13 37 37 H 1.09008 * 113.73919 * 269.15198 * 17 16 15 38 38 H 1.08998 * 109.46982 * 294.99341 * 18 17 16 39 39 H 1.08998 * 109.47488 * 54.99573 * 18 17 16 40 40 H 1.08998 * 109.47216 * 60.00431 * 21 20 19 41 41 H 1.09000 * 109.46982 * 179.97438 * 21 20 19 42 42 H 1.09004 * 109.47452 * 300.00065 * 21 20 19 43 43 H 1.08997 * 109.46651 * 59.99666 * 22 20 19 44 44 H 1.08991 * 109.46669 * 179.97438 * 22 20 19 45 45 H 1.09000 * 109.46898 * 300.00268 * 22 20 19 46 46 H 1.08993 * 109.46944 * 60.00057 * 24 23 20 47 47 H 1.09000 * 109.46844 * 179.97438 * 24 23 20 48 48 H 1.09000 * 109.47034 * 299.99703 * 24 23 20 49 49 H 1.08996 * 109.47045 * 59.99713 * 25 23 20 50 50 H 1.09000 * 109.47626 * 180.02562 * 25 23 20 51 51 H 1.09002 * 109.46753 * 300.00052 * 25 23 20 52 52 H 1.09000 * 109.47690 * 59.99731 * 26 23 20 53 53 H 1.08998 * 109.47347 * 179.97438 * 26 23 20 54 54 H 1.09004 * 109.47094 * 299.99885 * 26 23 20 55 55 H 1.09001 * 113.76834 * 90.33413 * 27 15 13 56 56 H 1.09008 * 113.76618 * 318.94175 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5522 0.7093 0.0006 5 6 4.7537 1.6189 0.0013 6 8 5.5392 1.3696 1.1687 7 14 4.1886 3.3942 0.0004 8 1 3.3705 3.6538 1.2123 9 1 5.3727 4.2904 0.0005 10 1 3.3724 3.6533 -1.2128 11 6 3.5780 -0.6888 0.0070 12 6 2.2678 -1.1182 0.0005 13 6 1.8124 -2.5125 0.0006 14 8 0.6256 -2.7650 -0.0933 15 7 2.7083 -3.5140 0.1048 16 6 2.6094 -4.9805 0.2372 17 6 4.0182 -5.0265 -0.3816 18 6 4.9547 -6.0310 0.2928 19 8 6.1912 -6.0832 -0.4216 20 14 7.2770 -7.1253 0.2071 21 6 7.6743 -6.6272 1.9577 22 6 6.5636 -8.8463 0.1978 23 6 8.8333 -7.0934 -0.8166 24 6 9.4194 -5.6800 -0.8095 25 6 9.8521 -8.0704 -0.2266 26 6 8.5066 -7.5027 -2.2542 27 6 4.1821 -3.5846 0.1322 28 1 -0.3633 0.0871 1.0239 29 1 -0.3633 0.8432 -0.5875 30 1 -0.3633 -0.9304 -0.4366 31 1 1.9082 2.1236 -0.0004 32 1 5.3541 1.4283 -0.8883 33 1 5.0675 1.5192 1.9994 34 1 4.4583 -1.3144 0.0131 35 1 1.8387 -5.4274 -0.3909 36 1 2.5717 -5.3267 1.2701 37 1 4.0176 -5.1095 -1.4685 38 1 5.1418 -5.7199 1.3206 39 1 4.4918 -7.0178 0.2904 40 1 6.7637 -6.6462 2.5564 41 1 8.3996 -7.3238 2.3780 42 1 8.0917 -5.6202 1.9632 43 1 6.3312 -9.1377 -0.8265 44 1 7.2895 -9.5427 0.6175 45 1 5.6529 -8.8653 0.7965 46 1 9.6521 -5.3884 0.2146 47 1 10.3302 -5.6614 -1.4081 48 1 8.6937 -4.9837 -1.2298 49 1 9.4348 -9.0773 -0.2312 50 1 10.7628 -8.0514 -0.8252 51 1 10.0847 -7.7783 0.7975 52 1 7.7810 -6.8064 -2.6744 53 1 9.4170 -7.4836 -2.8532 54 1 8.0890 -8.5096 -2.2592 55 1 4.6064 -3.5208 1.1342 56 1 4.6672 -2.9170 -0.5800 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14186584_10803934.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:41:34 Heat of formation + Delta-G solvation = -73.503518 kcal Electronic energy + Delta-G solvation = -32207.050062 eV Core-core repulsion = 28048.968738 eV Total energy + Delta-G solvation = -4158.081324 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 368.209 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.61398 -41.10018 -39.03427 -37.65397 -37.34824 -36.75740 -34.03244 -32.25289 -30.44364 -29.29316 -28.98379 -28.40945 -27.78482 -27.31110 -27.20233 -26.81457 -25.54439 -23.25985 -21.37333 -21.03302 -20.34747 -19.88965 -18.46958 -17.91375 -17.61444 -17.23983 -17.13450 -16.61648 -16.48146 -15.99954 -15.81704 -15.68244 -15.44285 -15.12369 -14.89470 -14.78081 -14.69404 -14.50912 -14.20873 -14.13392 -13.81684 -13.62481 -13.53599 -13.40737 -13.31152 -13.27116 -13.19234 -13.15658 -13.06993 -12.88831 -12.87172 -12.43027 -12.33371 -12.32666 -12.09236 -11.98777 -11.71893 -11.63337 -11.62293 -11.36621 -11.25533 -10.90691 -10.29854 -10.21139 -9.98616 -9.88594 -9.70531 -9.26370 0.35685 1.27625 1.37443 1.48847 1.55701 1.61095 1.62359 1.87456 2.00688 2.08566 2.21380 2.24627 2.55033 3.28880 3.41518 3.69799 3.80419 3.92918 3.97910 3.98924 4.18924 4.19090 4.20350 4.29702 4.33745 4.36529 4.45050 4.51837 4.53913 4.59579 4.62009 4.65051 4.70947 4.78123 4.80430 4.82192 4.84018 4.86516 4.87785 4.87947 4.89284 4.90353 5.06503 5.15436 5.15994 5.18014 5.24510 5.29240 5.41124 5.48035 5.51061 5.62266 5.67729 5.68857 5.73029 5.86114 6.11986 6.52472 6.84968 6.97860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.415 5.415 3 C 0.021 3.979 4 C -0.217 4.217 5 C -0.042 4.042 6 O -0.555 6.555 7 Si 0.981 3.019 8 H -0.252 1.252 9 H -0.276 1.276 10 H -0.257 1.257 11 C -0.112 4.112 12 C -0.076 4.076 13 C 0.603 3.397 14 O -0.591 6.591 15 N -0.640 5.640 16 C 0.111 3.889 17 C -0.109 4.109 18 C 0.085 3.915 19 O -0.634 6.634 20 Si 1.327 2.673 21 C -0.519 4.519 22 C -0.522 4.522 23 C -0.387 4.387 24 C -0.137 4.137 25 C -0.141 4.141 26 C -0.137 4.137 27 C 0.101 3.899 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.088 0.912 31 H 0.189 0.811 32 H 0.118 0.882 33 H 0.386 0.614 34 H 0.163 0.837 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.061 0.939 47 H 0.043 0.957 48 H 0.060 0.940 49 H 0.061 0.939 50 H 0.046 0.954 51 H 0.063 0.937 52 H 0.058 0.942 53 H 0.044 0.956 54 H 0.058 0.942 55 H 0.111 0.889 56 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.518 -0.386 2.195 2.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.087 5.087 3 C -0.116 4.116 4 C -0.223 4.223 5 C -0.153 4.153 6 O -0.361 6.361 7 Si 0.805 3.195 8 H -0.175 1.175 9 H -0.201 1.201 10 H -0.181 1.181 11 C -0.138 4.138 12 C -0.189 4.189 13 C 0.395 3.605 14 O -0.474 6.474 15 N -0.373 5.373 16 C -0.010 4.010 17 C -0.128 4.128 18 C 0.009 3.991 19 O -0.593 6.593 20 Si 1.456 2.544 21 C -0.621 4.621 22 C -0.623 4.623 23 C -0.428 4.428 24 C -0.194 4.194 25 C -0.199 4.199 26 C -0.194 4.194 27 C -0.020 4.020 28 H 0.103 0.897 29 H 0.127 0.873 30 H 0.106 0.894 31 H 0.206 0.794 32 H 0.136 0.864 33 H 0.235 0.765 34 H 0.180 0.820 35 H 0.100 0.900 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.080 0.920 47 H 0.062 0.938 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.066 0.934 51 H 0.082 0.918 52 H 0.077 0.923 53 H 0.063 0.937 54 H 0.077 0.923 55 H 0.129 0.871 56 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.476 0.493 1.471 1.623 hybrid contribution -0.150 -0.681 0.447 0.828 sum 0.326 -0.187 1.918 1.955 Atomic orbital electron populations 1.22469 0.75038 1.06050 1.04708 1.44023 1.07601 1.04808 1.52263 1.22262 0.90284 0.92286 1.06748 1.20016 0.94154 0.95008 1.13138 1.24319 0.92276 1.07165 0.91544 1.86456 1.41282 1.92207 1.16167 0.85297 0.79071 0.74181 0.80997 1.17530 1.20058 1.18144 1.21685 0.94473 0.95054 1.02547 1.20056 0.91156 0.87276 1.20387 1.16827 0.84197 0.83608 0.75843 1.90748 1.17463 1.85081 1.54142 1.49673 1.08810 1.07401 1.71400 1.23428 0.97192 0.77682 1.02740 1.23130 0.93102 0.94243 1.02345 1.22165 0.82969 0.99436 0.94541 1.85350 1.32698 1.76166 1.65125 0.75981 0.59017 0.58232 0.61180 1.27117 1.05932 1.06202 1.22839 1.27160 1.07701 1.22933 1.04530 1.26005 1.14249 0.97780 1.04809 1.21542 1.00586 0.95360 1.01911 1.21605 0.98542 0.98812 1.00900 1.21541 1.01214 1.01305 0.95357 1.23803 0.78446 0.96508 1.03242 0.89685 0.87261 0.89355 0.79369 0.86400 0.76510 0.81980 0.89987 0.87189 0.87197 0.90171 0.90361 0.90702 0.90785 0.90945 0.91330 0.90771 0.90765 0.92026 0.93766 0.92148 0.91963 0.93443 0.91796 0.92294 0.93710 0.92258 0.87117 0.88679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.08 10.77 127.77 1.38 1.46 16 2 N -0.41 -1.98 3.16 -534.31 -1.69 -3.67 16 3 C 0.02 0.03 9.94 83.48 0.83 0.86 16 4 C -0.22 -0.35 5.44 -20.12 -0.11 -0.46 16 5 C -0.04 0.05 3.02 71.24 0.22 0.26 16 6 O -0.55 -0.02 12.88 -148.98 -1.92 -1.93 16 7 Si 0.98 -2.18 25.87 68.60 1.77 -0.41 16 8 H -0.25 0.64 7.11 99.48 0.71 1.35 16 9 H -0.28 -0.45 7.11 99.48 0.71 0.26 16 10 H -0.26 0.36 7.11 99.48 0.71 1.07 16 11 C -0.11 -0.38 9.91 22.57 0.22 -0.16 16 12 C -0.08 -0.53 6.89 40.35 0.28 -0.26 16 13 C 0.60 5.71 8.01 86.45 0.69 6.40 16 14 O -0.59 -9.37 15.29 -4.34 -0.07 -9.43 16 15 N -0.64 -1.67 3.61 -841.40 -3.03 -4.71 16 16 C 0.11 -0.30 8.41 86.48 0.73 0.43 16 17 C -0.11 0.57 4.20 -10.14 -0.04 0.52 16 18 C 0.08 -0.62 4.98 71.98 0.36 -0.27 16 19 O -0.63 2.62 8.56 -148.98 -1.28 1.34 16 20 Si 1.33 -7.05 8.45 68.60 0.58 -6.47 16 21 C -0.52 2.55 8.50 113.37 0.96 3.52 16 22 C -0.52 2.19 8.50 113.37 0.96 3.15 16 23 C -0.39 0.80 0.53 -10.79 -0.01 0.79 16 24 C -0.14 0.15 7.85 71.98 0.56 0.71 16 25 C -0.14 0.31 7.85 71.98 0.56 0.87 16 26 C -0.14 0.09 7.85 71.98 0.56 0.66 16 27 C 0.10 -0.40 6.60 86.48 0.57 0.18 16 28 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.11 -0.46 8.14 -2.39 -0.02 -0.48 16 30 H 0.09 0.57 5.96 -2.38 -0.01 0.56 16 31 H 0.19 -0.80 6.19 -2.91 -0.02 -0.82 16 32 H 0.12 -0.26 7.96 -2.39 -0.02 -0.28 16 33 H 0.39 -2.29 8.70 -74.06 -0.64 -2.94 16 34 H 0.16 0.01 5.12 -2.91 -0.01 -0.01 16 35 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 36 H 0.11 -0.74 8.10 -2.38 -0.02 -0.76 16 37 H 0.11 -0.39 8.14 -2.38 -0.02 -0.41 16 38 H 0.08 -0.87 6.91 -2.39 -0.02 -0.89 16 39 H 0.08 -0.79 7.21 -2.39 -0.02 -0.81 16 40 H 0.07 -0.48 7.48 -2.39 -0.02 -0.50 16 41 H 0.07 -0.34 7.79 -2.39 -0.02 -0.36 16 42 H 0.07 -0.31 7.79 -2.39 -0.02 -0.33 16 43 H 0.07 -0.21 7.79 -2.39 -0.02 -0.23 16 44 H 0.07 -0.30 7.79 -2.39 -0.02 -0.32 16 45 H 0.07 -0.41 7.48 -2.39 -0.02 -0.43 16 46 H 0.06 -0.16 7.79 -2.39 -0.02 -0.18 16 47 H 0.04 0.02 8.14 -2.39 -0.02 0.00 16 48 H 0.06 -0.06 7.97 -2.39 -0.02 -0.08 16 49 H 0.06 -0.22 7.79 -2.39 -0.02 -0.24 16 50 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 51 H 0.06 -0.24 7.79 -2.39 -0.02 -0.26 16 52 H 0.06 -0.03 7.97 -2.39 -0.02 -0.05 16 53 H 0.04 0.04 8.14 -2.39 -0.02 0.02 16 54 H 0.06 -0.11 7.79 -2.39 -0.02 -0.13 16 55 H 0.11 -0.82 7.89 -2.39 -0.02 -0.84 16 56 H 0.10 -0.39 6.42 -2.38 -0.02 -0.41 16 Total: 0.00 -19.37 439.02 4.07 -15.30 By element: Atomic # 1 Polarization: -9.66 SS G_CDS: 0.96 Total: -8.70 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 8.73 Total: 18.67 kcal Atomic # 7 Polarization: -3.65 SS G_CDS: -4.72 Total: -8.38 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -3.26 Total: -10.02 kcal Atomic # 14 Polarization: -9.23 SS G_CDS: 2.35 Total: -6.87 kcal Total: -19.37 4.07 -15.30 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14186584_10803934.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.200 kcal (2) G-P(sol) polarization free energy of solvation -19.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds