Wall clock time and date at job start Sat Mar 6 2021 23:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47218 * 2 1 4 4 C 1.53003 * 109.47344 * 239.99949 * 2 1 3 5 5 Si 1.86296 * 109.47318 * 119.99898 * 2 1 3 6 6 C 1.86300 * 109.47301 * 300.00038 * 5 2 1 7 7 C 1.86298 * 109.47539 * 179.97438 * 5 2 1 8 8 O 1.63101 * 109.47291 * 59.99826 * 5 2 1 9 9 C 1.42900 * 114.00426 * 180.02562 * 8 5 2 10 10 C 1.53003 * 109.47107 * 179.97438 * 9 8 5 11 11 C 1.53492 * 114.20220 * 184.99836 * 10 9 8 12 12 N 1.47064 * 87.98380 * 220.34635 * 11 10 9 13 13 C 1.34780 * 136.05729 * 207.08703 * 12 11 10 14 14 O 1.21570 * 120.00025 * 355.00539 * 13 12 11 15 15 C 1.47693 * 119.99888 * 175.27754 * 13 12 11 16 16 C 1.39617 * 120.16853 * 28.83271 * 15 13 12 17 17 C 1.37901 * 119.88325 * 179.97438 * 16 15 13 18 18 C 1.50690 * 119.89145 * 179.97438 * 17 16 15 19 19 O 1.42906 * 109.47341 * 65.00268 * 18 17 16 20 20 Si 1.86308 * 109.47032 * 184.99914 * 18 17 16 21 21 H 1.48498 * 109.47019 * 59.99877 * 20 18 17 22 22 H 1.48499 * 109.46960 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46761 * 299.99917 * 20 18 17 24 24 C 1.38417 * 120.21455 * 359.97438 * 17 16 15 25 25 C 1.38252 * 120.33667 * 0.02562 * 24 17 16 26 26 C 1.38275 * 120.12236 * 359.74946 * 25 24 17 27 27 F 1.35094 * 120.11421 * 180.25120 * 26 25 24 28 28 C 1.47065 * 87.88632 * 27.34437 * 12 11 10 29 29 H 1.08998 * 109.47327 * 300.00353 * 1 2 3 30 30 H 1.09000 * 109.47157 * 59.99604 * 1 2 3 31 31 H 1.08994 * 109.47410 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47023 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46957 * 299.99933 * 3 2 1 34 34 H 1.08997 * 109.47494 * 60.00098 * 3 2 1 35 35 H 1.08999 * 109.46602 * 300.00157 * 4 2 1 36 36 H 1.08999 * 109.47107 * 59.99898 * 4 2 1 37 37 H 1.08997 * 109.47541 * 180.02562 * 4 2 1 38 38 H 1.08999 * 109.47453 * 179.97438 * 6 5 2 39 39 H 1.09007 * 109.46950 * 299.99874 * 6 5 2 40 40 H 1.09007 * 109.47065 * 59.99568 * 6 5 2 41 41 H 1.09004 * 109.47256 * 300.00322 * 7 5 2 42 42 H 1.08999 * 109.47231 * 59.99688 * 7 5 2 43 43 H 1.08999 * 109.47322 * 179.97438 * 7 5 2 44 44 H 1.08997 * 109.46908 * 59.99831 * 9 8 5 45 45 H 1.09003 * 109.46989 * 299.99914 * 9 8 5 46 46 H 1.08998 * 113.28375 * 318.06621 * 10 9 8 47 47 H 1.09005 * 113.46724 * 105.56671 * 11 10 9 48 48 H 1.09001 * 113.47380 * 335.12905 * 11 10 9 49 49 H 1.08001 * 120.06017 * 359.97438 * 16 15 13 50 50 H 1.09000 * 109.47220 * 304.99975 * 18 17 16 51 51 H 0.96695 * 114.00303 * 59.99768 * 19 18 17 52 52 H 1.07995 * 119.83197 * 180.02562 * 24 17 16 53 53 H 1.08000 * 119.93555 * 180.02562 * 25 24 17 54 54 H 1.09003 * 113.46656 * 87.43907 * 28 12 11 55 55 H 1.08998 * 113.46726 * 217.87863 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8789 1.5208 8 8 1.6073 -2.4159 1.5212 9 6 2.0285 -3.1813 2.6520 10 6 1.4626 -4.5990 2.5477 11 6 1.7487 -5.4823 3.7700 12 7 2.0017 -6.5947 2.8420 13 6 1.9175 -7.9389 2.8925 14 8 1.6384 -8.4916 3.9387 15 6 2.1702 -8.7408 1.6782 16 6 3.0357 -8.2656 0.6911 17 6 3.2678 -9.0194 -0.4401 18 6 4.2015 -8.5065 -1.5058 19 8 5.5268 -8.4222 -0.9778 20 14 4.1852 -9.6720 -2.9592 21 1 2.8081 -9.7597 -3.5079 22 1 5.1058 -9.1668 -4.0092 23 1 4.6291 -11.0188 -2.5185 24 6 2.6459 -10.2456 -0.5997 25 6 1.7871 -10.7248 0.3720 26 6 1.5480 -9.9826 1.5139 27 9 0.7127 -10.4533 2.4657 28 6 2.3931 -5.5953 1.8366 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6766 -1.7489 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7217 -1.2490 38 1 1.8930 -0.5140 3.9323 39 1 1.8934 1.0278 3.0422 40 1 0.4400 0.0001 3.0423 41 1 4.3770 -1.3930 0.6308 42 1 4.3777 0.1486 1.5205 43 1 4.3773 -1.3923 2.4110 44 1 1.6637 -2.7112 3.5652 45 1 3.1174 -3.2252 2.6759 46 1 0.4267 -4.6256 2.2096 47 1 0.8776 -5.6376 4.4067 48 1 2.6316 -5.1752 4.3305 49 1 3.5227 -7.3094 0.8132 50 1 3.8757 -7.5178 -1.8292 51 1 5.8820 -9.2672 -0.6699 52 1 2.8324 -10.8310 -1.4879 53 1 1.3056 -11.6826 0.2410 54 1 3.4461 -5.3180 1.8874 55 1 2.0712 -5.8469 0.8261 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14186584_12335834.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:50:50 Heat of formation + Delta-G solvation = -137.930446 kcal Electronic energy + Delta-G solvation = -34084.717569 eV Core-core repulsion = 29547.125898 eV Total energy + Delta-G solvation = -4537.591671 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 383.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.11026 -41.82315 -40.43409 -39.19121 -37.46485 -37.40364 -36.76071 -33.27427 -32.36117 -31.26898 -29.30331 -28.98492 -27.78963 -27.30967 -27.16162 -27.13432 -26.57682 -24.93882 -23.00570 -21.75731 -20.43246 -20.34593 -18.90265 -18.47556 -18.36497 -17.69278 -17.42748 -17.31960 -16.90899 -16.79656 -16.19415 -16.08582 -15.83623 -15.78609 -15.41329 -15.18223 -15.11189 -14.79532 -14.71965 -14.46838 -14.31078 -14.26103 -13.84141 -13.80601 -13.56643 -13.53005 -13.32090 -13.26897 -13.24905 -13.09228 -12.89173 -12.87601 -12.86988 -12.44787 -12.33516 -12.23011 -12.08776 -11.95756 -11.66260 -11.64470 -11.60841 -11.44569 -11.23897 -10.98510 -10.43534 -10.38011 -10.21681 -9.99053 -9.95811 -9.78545 -0.51091 -0.07247 1.19618 1.45360 1.50666 1.51921 1.57881 1.67958 1.87502 1.98394 2.20909 2.35810 2.54615 2.98303 3.10837 3.28758 3.41685 3.52291 3.66785 3.89601 3.94362 3.96262 4.08100 4.18676 4.18849 4.30955 4.33682 4.45263 4.49265 4.52396 4.55069 4.58670 4.61981 4.70473 4.76590 4.77314 4.81154 4.84269 4.85887 4.87383 4.87972 4.88376 4.90256 4.91025 5.06303 5.09037 5.15159 5.15998 5.21871 5.28231 5.40942 5.47869 5.50703 5.55321 5.61363 5.67729 5.73381 6.47803 6.71756 6.85774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.387 4.387 3 C -0.142 4.142 4 C -0.136 4.136 5 Si 1.329 2.671 6 C -0.524 4.524 7 C -0.519 4.519 8 O -0.633 6.633 9 C 0.087 3.913 10 C -0.109 4.109 11 C 0.101 3.899 12 N -0.646 5.646 13 C 0.579 3.421 14 O -0.580 6.580 15 C -0.180 4.180 16 C -0.026 4.026 17 C -0.131 4.131 18 C -0.074 4.074 19 O -0.549 6.549 20 Si 0.972 3.028 21 H -0.252 1.252 22 H -0.274 1.274 23 H -0.248 1.248 24 C -0.067 4.067 25 C -0.149 4.149 26 C 0.128 3.872 27 F -0.140 7.140 28 C 0.094 3.906 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.043 0.957 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.111 0.889 47 H 0.073 0.927 48 H 0.111 0.889 49 H 0.160 0.840 50 H 0.138 0.862 51 H 0.390 0.610 52 H 0.158 0.842 53 H 0.166 0.834 54 H 0.119 0.881 55 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.532 3.614 -5.006 7.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.428 4.428 3 C -0.199 4.199 4 C -0.194 4.194 5 Si 1.457 2.543 6 C -0.625 4.625 7 C -0.620 4.620 8 O -0.593 6.593 9 C 0.011 3.989 10 C -0.128 4.128 11 C -0.021 4.021 12 N -0.379 5.379 13 C 0.370 3.630 14 O -0.460 6.460 15 C -0.184 4.184 16 C -0.044 4.044 17 C -0.131 4.131 18 C -0.184 4.184 19 O -0.356 6.356 20 Si 0.796 3.204 21 H -0.175 1.175 22 H -0.200 1.200 23 H -0.172 1.172 24 C -0.084 4.084 25 C -0.167 4.167 26 C 0.107 3.893 27 F -0.119 7.119 28 C -0.027 4.027 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.102 0.898 46 H 0.129 0.871 47 H 0.092 0.908 48 H 0.129 0.871 49 H 0.178 0.822 50 H 0.156 0.844 51 H 0.240 0.760 52 H 0.175 0.825 53 H 0.183 0.817 54 H 0.137 0.863 55 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.083 2.958 -5.406 6.891 hybrid contribution -0.298 -0.013 1.086 1.126 sum 2.785 2.945 -4.320 5.924 Atomic orbital electron populations 1.21543 0.94534 1.01827 1.01558 1.26003 1.00183 1.02912 1.13743 1.21610 1.01325 0.95008 1.01958 1.21541 1.01108 1.00177 0.96537 0.75955 0.62456 0.52599 0.63258 1.27197 1.06771 1.09825 1.18729 1.27104 1.25078 1.04944 1.04913 1.85342 1.79631 1.46320 1.47976 1.22101 0.99370 0.89803 0.87598 1.22983 1.01481 0.92711 0.95642 1.23260 1.02713 0.81785 0.94299 1.49504 1.65566 1.02836 1.20018 1.17853 0.76822 0.80698 0.87577 1.90824 1.51061 1.71170 1.32995 1.19988 1.05037 0.95686 0.97652 1.21340 0.92955 1.00046 0.90092 1.20538 1.00190 0.95045 0.97346 1.25031 0.82495 1.10553 1.00360 1.86511 1.27520 1.37971 1.83570 0.85352 0.80788 0.77898 0.76342 1.17540 1.19956 1.17179 1.21410 0.93571 0.94912 0.98550 1.21331 1.01346 1.01965 0.92108 1.18137 0.90992 0.92565 0.87572 1.91538 1.68944 1.88022 1.63374 1.23720 1.01147 0.83423 0.94440 0.92382 0.93707 0.92262 0.91720 0.93450 0.92072 0.92034 0.93793 0.91903 0.90821 0.90807 0.91441 0.90738 0.90824 0.90650 0.90479 0.89791 0.87073 0.90810 0.87088 0.82222 0.84405 0.76044 0.82525 0.81665 0.86307 0.88608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.19 7.85 71.98 0.56 0.75 16 2 C -0.39 1.17 0.53 -10.79 -0.01 1.17 16 3 C -0.14 0.41 7.85 71.98 0.56 0.98 16 4 C -0.14 0.35 7.85 71.98 0.56 0.91 16 5 Si 1.33 -8.30 8.45 68.60 0.58 -7.72 16 6 C -0.52 2.37 8.50 113.37 0.96 3.34 16 7 C -0.52 3.19 8.50 113.37 0.96 4.15 16 8 O -0.63 3.34 8.56 -148.98 -1.28 2.07 16 9 C 0.09 -0.73 5.04 71.98 0.36 -0.36 16 10 C -0.11 0.65 4.38 -10.37 -0.05 0.61 16 11 C 0.10 -0.24 8.19 83.18 0.68 0.44 16 12 N -0.65 -1.59 3.67 -861.42 -3.17 -4.76 16 13 C 0.58 6.16 7.74 86.74 0.67 6.83 16 14 O -0.58 -11.81 16.64 -3.94 -0.07 -11.87 16 15 C -0.18 -1.08 5.83 -20.05 -0.12 -1.20 16 16 C -0.03 0.03 8.33 22.52 0.19 0.22 16 17 C -0.13 0.53 5.35 -19.90 -0.11 0.43 16 18 C -0.07 0.53 2.80 71.23 0.20 0.73 16 19 O -0.55 2.96 12.83 -148.98 -1.91 1.05 16 20 Si 0.97 -6.25 25.13 68.60 1.72 -4.53 16 21 H -0.25 1.39 7.11 99.48 0.71 2.10 16 22 H -0.27 0.56 7.11 99.48 0.71 1.27 16 23 H -0.25 1.63 7.04 99.48 0.70 2.33 16 24 C -0.07 0.26 8.66 22.32 0.19 0.45 16 25 C -0.15 -0.01 10.01 22.28 0.22 0.22 16 26 C 0.13 0.94 7.25 22.67 0.16 1.10 16 27 F -0.14 -1.95 15.95 44.97 0.72 -1.24 16 28 C 0.09 -0.56 5.82 83.27 0.48 -0.08 16 29 H 0.06 -0.13 7.79 -2.39 -0.02 -0.15 16 30 H 0.04 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.06 -0.08 7.97 -2.39 -0.02 -0.09 16 32 H 0.06 -0.30 7.79 -2.38 -0.02 -0.32 16 33 H 0.05 -0.06 8.14 -2.39 -0.02 -0.07 16 34 H 0.06 -0.24 7.79 -2.39 -0.02 -0.26 16 35 H 0.06 -0.17 7.96 -2.39 -0.02 -0.19 16 36 H 0.04 -0.03 8.14 -2.39 -0.02 -0.05 16 37 H 0.06 -0.26 7.79 -2.39 -0.02 -0.28 16 38 H 0.07 -0.43 7.48 -2.39 -0.02 -0.45 16 39 H 0.07 -0.32 7.79 -2.38 -0.02 -0.34 16 40 H 0.07 -0.22 7.79 -2.38 -0.02 -0.23 16 41 H 0.07 -0.44 7.79 -2.39 -0.02 -0.46 16 42 H 0.07 -0.41 7.79 -2.39 -0.02 -0.43 16 43 H 0.07 -0.57 7.48 -2.39 -0.02 -0.59 16 44 H 0.08 -0.81 7.21 -2.39 -0.02 -0.83 16 45 H 0.08 -1.04 6.87 -2.39 -0.02 -1.06 16 46 H 0.11 -0.45 8.14 -2.39 -0.02 -0.47 16 47 H 0.07 0.01 8.14 -2.38 -0.02 0.00 16 48 H 0.11 -0.73 8.10 -2.39 -0.02 -0.75 16 49 H 0.16 -0.82 5.74 -2.91 -0.02 -0.83 16 50 H 0.14 -1.39 7.96 -2.39 -0.02 -1.41 16 51 H 0.39 -4.28 8.70 -74.06 -0.64 -4.93 16 52 H 0.16 -1.31 4.84 -2.91 -0.01 -1.33 16 53 H 0.17 -0.68 8.06 -2.91 -0.02 -0.70 16 54 H 0.12 -1.27 7.86 -2.39 -0.02 -1.29 16 55 H 0.10 -0.70 7.29 -2.39 -0.02 -0.72 16 Total: 0.00 -22.98 439.50 4.10 -18.87 By element: Atomic # 1 Polarization: -13.54 SS G_CDS: 0.99 Total: -12.56 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: 6.51 Total: 20.68 kcal Atomic # 7 Polarization: -1.59 SS G_CDS: -3.17 Total: -4.76 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -3.25 Total: -8.75 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.72 Total: -1.24 kcal Atomic # 14 Polarization: -14.56 SS G_CDS: 2.30 Total: -12.25 kcal Total: -22.98 4.10 -18.87 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14186584_12335834.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.057 kcal (2) G-P(sol) polarization free energy of solvation -22.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds