Wall clock time and date at job start Sun Mar 7 2021 00:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46946 * 2 1 4 4 C 1.52995 * 109.47330 * 239.99954 * 2 1 3 5 5 Si 1.86304 * 109.46768 * 119.99848 * 2 1 3 6 6 C 1.86297 * 109.47130 * 300.00000 * 5 2 1 7 7 C 1.86301 * 109.46748 * 180.02562 * 5 2 1 8 8 O 1.63093 * 109.47045 * 60.00422 * 5 2 1 9 9 C 1.42901 * 113.99944 * 179.97438 * 8 5 2 10 10 C 1.52996 * 109.47474 * 179.97438 * 9 8 5 11 11 C 1.53494 * 114.21338 * 185.00019 * 10 9 8 12 12 N 1.47066 * 87.98929 * 220.34798 * 11 10 9 13 13 C 1.34775 * 136.05693 * 207.08305 * 12 11 10 14 14 O 1.21570 * 120.00201 * 5.47242 * 13 12 11 15 15 C 1.47702 * 119.99976 * 185.46841 * 13 12 11 16 16 C 1.39613 * 120.15482 * 24.26963 * 15 13 12 17 17 C 1.38106 * 119.85427 * 179.97438 * 16 15 13 18 18 F 1.35104 * 119.91976 * 180.02562 * 17 16 15 19 19 C 1.38611 * 120.16438 * 359.97389 * 17 16 15 20 20 C 1.50696 * 119.84600 * 180.02562 * 19 17 16 21 21 O 1.42895 * 109.47150 * 285.00405 * 20 19 17 22 22 Si 1.86295 * 109.47362 * 165.00317 * 20 19 17 23 23 H 1.48503 * 109.47336 * 179.97438 * 22 20 19 24 24 H 1.48496 * 109.47151 * 299.99922 * 22 20 19 25 25 H 1.48501 * 109.47421 * 60.00278 * 22 20 19 26 26 C 1.38234 * 120.31251 * 0.05080 * 19 17 16 27 27 C 1.38266 * 120.14828 * 359.95116 * 26 19 17 28 28 F 1.35095 * 120.08720 * 180.30029 * 27 26 19 29 29 C 1.47071 * 87.88464 * 27.33969 * 12 11 10 30 30 H 1.09001 * 109.47207 * 299.99874 * 1 2 3 31 31 H 1.09000 * 109.47081 * 59.99979 * 1 2 3 32 32 H 1.09002 * 109.46869 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47213 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47247 * 299.99919 * 3 2 1 35 35 H 1.09001 * 109.47064 * 60.00039 * 3 2 1 36 36 H 1.09005 * 109.46962 * 300.00282 * 4 2 1 37 37 H 1.09000 * 109.46984 * 60.00007 * 4 2 1 38 38 H 1.08994 * 109.47245 * 180.02562 * 4 2 1 39 39 H 1.09000 * 109.46832 * 180.02562 * 6 5 2 40 40 H 1.08996 * 109.47081 * 299.99764 * 6 5 2 41 41 H 1.08994 * 109.46971 * 60.00428 * 6 5 2 42 42 H 1.09002 * 109.47603 * 300.00111 * 7 5 2 43 43 H 1.09005 * 109.47472 * 60.00087 * 7 5 2 44 44 H 1.09000 * 109.47061 * 180.02562 * 7 5 2 45 45 H 1.08998 * 109.47246 * 59.99997 * 9 8 5 46 46 H 1.09001 * 109.47126 * 299.99936 * 9 8 5 47 47 H 1.09005 * 113.28053 * 318.07068 * 10 9 8 48 48 H 1.08997 * 113.47017 * 105.56324 * 11 10 9 49 49 H 1.09003 * 113.46440 * 335.12572 * 11 10 9 50 50 H 1.08006 * 120.07321 * 359.97438 * 16 15 13 51 51 H 1.08995 * 109.47106 * 45.00353 * 20 19 17 52 52 H 0.96704 * 114.00577 * 179.97438 * 21 20 19 53 53 H 1.08000 * 119.92529 * 179.97438 * 26 19 17 54 54 H 1.08997 * 113.46981 * 87.44100 * 29 12 11 55 55 H 1.09001 * 113.46788 * 217.87896 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 14 2.1509 -0.8782 1.5212 6 6 1.5299 0.0000 3.0423 7 6 4.0139 -0.8775 1.5216 8 8 1.6073 -2.4159 1.5212 9 6 2.0294 -3.1816 2.6515 10 6 1.4636 -4.5993 2.5472 11 6 1.7504 -5.4830 3.7690 12 7 2.0029 -6.5952 2.8405 13 6 1.9188 -7.9394 2.8906 14 8 1.4587 -8.4833 3.8757 15 6 2.3857 -8.7516 1.7488 16 6 3.3410 -8.2402 0.8684 17 6 3.7735 -9.0053 -0.1969 18 9 4.6982 -8.5119 -1.0494 19 6 3.2620 -10.2786 -0.3931 20 6 3.7395 -11.1074 -1.5576 21 8 3.1540 -10.6150 -2.7645 22 14 3.2372 -12.8832 -1.3033 23 1 3.7072 -13.6999 -2.4511 24 1 3.8456 -13.3950 -0.0491 25 1 1.7578 -12.9704 -1.2074 26 6 2.3156 -10.7915 0.4741 27 6 1.8734 -10.0368 1.5448 28 9 0.9529 -10.5416 2.3951 29 6 2.3936 -5.5954 1.8352 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6767 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7216 -1.2489 39 1 1.8936 -0.5135 3.9323 40 1 1.8933 1.0276 3.0423 41 1 0.4400 0.0000 3.0422 42 1 4.3777 -1.3911 0.6316 43 1 4.3770 0.1503 1.5218 44 1 4.3773 -1.3917 2.4114 45 1 1.6652 -2.7118 3.5651 46 1 3.1183 -3.2254 2.6746 47 1 0.4274 -4.6259 2.2098 48 1 0.8799 -5.6386 4.4062 49 1 2.6338 -5.1760 4.3289 50 1 3.7408 -7.2484 1.0201 51 1 4.8253 -11.0435 -1.6281 52 1 3.4180 -11.1021 -3.5571 53 1 1.9210 -11.7842 0.3151 54 1 3.4465 -5.3180 1.8852 55 1 2.0710 -5.8467 0.8248 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14186584_12360598.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:06:54 Heat of formation + Delta-G solvation = -176.872494 kcal Electronic energy + Delta-G solvation = -36463.414778 eV Core-core repulsion = 31454.680477 eV Total energy + Delta-G solvation = -5008.734301 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 401.179 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -50.22051 -50.11441 -41.84154 -40.34359 -39.18988 -37.63033 -37.43785 -36.76963 -33.81175 -31.57183 -31.46291 -29.31821 -28.99013 -28.15043 -27.79049 -27.31815 -27.12786 -26.43731 -24.43035 -23.41832 -21.92792 -20.76082 -20.36092 -19.14879 -18.68900 -18.62889 -18.49221 -17.74983 -17.58753 -17.28180 -16.95900 -16.74850 -16.54462 -16.31995 -16.01655 -15.84446 -15.69836 -15.44447 -15.37630 -14.99640 -14.80079 -14.73512 -14.39603 -14.34755 -14.23297 -13.84550 -13.82951 -13.66788 -13.53686 -13.49483 -13.32330 -13.25631 -13.10329 -13.09196 -12.90211 -12.88330 -12.49891 -12.35661 -12.34533 -12.15311 -11.95796 -11.90638 -11.65742 -11.63444 -11.45983 -11.24169 -10.99924 -10.61858 -10.43418 -10.21608 -10.00301 -9.98506 -9.79684 -0.83551 -0.37274 1.02922 1.29231 1.41951 1.44520 1.48934 1.64846 1.86033 1.86621 2.09986 2.20939 2.54093 2.69479 2.75894 2.99626 3.17078 3.24383 3.35317 3.65169 3.73937 3.89384 3.96022 4.09474 4.17597 4.17729 4.27212 4.29813 4.33330 4.35597 4.48497 4.49451 4.51351 4.57330 4.60778 4.62407 4.69841 4.75048 4.78204 4.81645 4.84219 4.86106 4.87132 4.88231 4.89637 5.05168 5.13987 5.14644 5.21902 5.27576 5.33309 5.40101 5.46577 5.49801 5.61702 5.67956 5.73099 6.42842 6.73246 6.79443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.388 4.388 3 C -0.141 4.141 4 C -0.136 4.136 5 Si 1.328 2.672 6 C -0.523 4.523 7 C -0.518 4.518 8 O -0.635 6.635 9 C 0.086 3.914 10 C -0.111 4.111 11 C 0.104 3.896 12 N -0.644 5.644 13 C 0.584 3.416 14 O -0.568 6.568 15 C -0.143 4.143 16 C -0.080 4.080 17 C 0.111 3.889 18 F -0.120 7.120 19 C -0.059 4.059 20 C -0.087 4.087 21 O -0.556 6.556 22 Si 0.971 3.029 23 H -0.241 1.241 24 H -0.254 1.254 25 H -0.261 1.261 26 C -0.138 4.138 27 C 0.134 3.866 28 F -0.128 7.128 29 C 0.090 3.910 30 H 0.058 0.942 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.042 0.958 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.109 0.891 48 H 0.075 0.925 49 H 0.118 0.882 50 H 0.179 0.821 51 H 0.105 0.895 52 H 0.405 0.595 53 H 0.163 0.837 54 H 0.124 0.876 55 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.189 3.254 -3.173 6.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.430 4.430 3 C -0.199 4.199 4 C -0.194 4.194 5 Si 1.457 2.543 6 C -0.624 4.624 7 C -0.620 4.620 8 O -0.594 6.594 9 C 0.011 3.989 10 C -0.130 4.130 11 C -0.017 4.017 12 N -0.378 5.378 13 C 0.374 3.626 14 O -0.448 6.448 15 C -0.147 4.147 16 C -0.099 4.099 17 C 0.091 3.909 18 F -0.099 7.099 19 C -0.061 4.061 20 C -0.197 4.197 21 O -0.366 6.366 22 Si 0.793 3.207 23 H -0.164 1.164 24 H -0.178 1.178 25 H -0.186 1.186 26 C -0.156 4.156 27 C 0.114 3.886 28 F -0.106 7.106 29 C -0.031 4.031 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.104 0.896 47 H 0.127 0.873 48 H 0.094 0.906 49 H 0.135 0.865 50 H 0.197 0.803 51 H 0.123 0.877 52 H 0.256 0.744 53 H 0.180 0.820 54 H 0.142 0.858 55 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.260 2.119 -2.271 5.272 hybrid contribution 0.166 0.485 -0.287 0.588 sum 4.426 2.604 -2.558 5.737 Atomic orbital electron populations 1.21544 0.94567 1.01775 1.01558 1.26036 1.00176 1.02979 1.13805 1.21605 1.01327 0.94962 1.01956 1.21538 1.01103 1.00106 0.96614 0.75954 0.62536 0.52600 0.63201 1.27180 1.06752 1.09823 1.18690 1.27092 1.24959 1.04975 1.04947 1.85349 1.79631 1.46344 1.48115 1.22121 0.99460 0.89739 0.87609 1.22985 1.01401 0.92770 0.95820 1.23288 1.03081 0.81269 0.94104 1.49478 1.65494 1.02721 1.20111 1.17531 0.78370 0.80739 0.85977 1.90852 1.47270 1.71564 1.35130 1.19750 1.02015 0.94280 0.98689 1.21456 0.95406 1.01623 0.91394 1.17244 0.91319 0.92246 0.90102 1.91568 1.62524 1.87248 1.68537 1.19597 0.95902 0.93994 0.96594 1.24765 1.01940 1.07975 0.84993 1.86454 1.72411 1.61306 1.16427 0.85369 0.80339 0.73125 0.81856 1.16400 1.17795 1.18606 1.21058 0.98302 1.02159 0.94112 1.17732 0.89641 0.91747 0.89520 1.91578 1.63199 1.86827 1.68974 1.23774 1.01492 0.83580 0.94292 0.92300 0.93772 0.92349 0.91694 0.93518 0.92007 0.92201 0.93859 0.91888 0.90688 0.90807 0.91470 0.90826 0.90803 0.90471 0.90333 0.89590 0.87255 0.90607 0.86460 0.80345 0.87685 0.74354 0.81979 0.85815 0.89009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.13 7.85 71.98 0.56 0.69 16 2 C -0.39 1.03 0.53 -10.80 -0.01 1.03 16 3 C -0.14 0.38 7.85 71.98 0.56 0.95 16 4 C -0.14 0.25 7.85 71.98 0.56 0.81 16 5 Si 1.33 -8.37 8.45 68.60 0.58 -7.79 16 6 C -0.52 2.52 8.50 113.37 0.96 3.48 16 7 C -0.52 3.36 8.50 113.37 0.96 4.32 16 8 O -0.63 3.35 8.56 -148.98 -1.28 2.08 16 9 C 0.09 -0.78 5.04 71.98 0.36 -0.42 16 10 C -0.11 0.74 4.38 -10.37 -0.05 0.69 16 11 C 0.10 -0.42 8.19 83.18 0.68 0.26 16 12 N -0.64 -0.62 3.64 -861.32 -3.14 -3.76 16 13 C 0.58 5.22 7.81 86.74 0.68 5.90 16 14 O -0.57 -10.28 16.48 -3.94 -0.06 -10.35 16 15 C -0.14 -0.80 5.84 -20.06 -0.12 -0.92 16 16 C -0.08 0.02 8.83 22.57 0.20 0.22 16 17 C 0.11 0.10 7.23 22.33 0.16 0.26 16 18 F -0.12 -0.14 16.73 44.97 0.75 0.62 16 19 C -0.06 -0.07 5.30 -19.78 -0.10 -0.18 16 20 C -0.09 0.27 2.43 71.23 0.17 0.45 16 21 O -0.56 1.33 12.85 -148.98 -1.92 -0.58 16 22 Si 0.97 -3.41 25.48 68.60 1.75 -1.67 16 23 H -0.24 1.07 7.11 99.48 0.71 1.78 16 24 H -0.25 0.42 7.11 99.48 0.71 1.13 16 25 H -0.26 0.13 6.72 99.48 0.67 0.80 16 26 C -0.14 -0.44 8.62 22.28 0.19 -0.25 16 27 C 0.13 1.03 7.25 22.67 0.16 1.19 16 28 F -0.13 -1.65 15.84 44.97 0.71 -0.94 16 29 C 0.09 -0.61 5.68 83.27 0.47 -0.13 16 30 H 0.06 -0.12 7.79 -2.39 -0.02 -0.14 16 31 H 0.04 0.03 8.14 -2.39 -0.02 0.01 16 32 H 0.06 -0.04 7.96 -2.39 -0.02 -0.06 16 33 H 0.06 -0.29 7.79 -2.39 -0.02 -0.31 16 34 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 35 H 0.06 -0.24 7.79 -2.39 -0.02 -0.26 16 36 H 0.06 -0.11 7.97 -2.38 -0.02 -0.12 16 37 H 0.04 0.00 8.14 -2.39 -0.02 -0.02 16 38 H 0.06 -0.23 7.79 -2.39 -0.02 -0.25 16 39 H 0.07 -0.48 7.48 -2.39 -0.02 -0.49 16 40 H 0.07 -0.34 7.79 -2.39 -0.02 -0.35 16 41 H 0.07 -0.23 7.79 -2.39 -0.02 -0.24 16 42 H 0.07 -0.45 7.79 -2.39 -0.02 -0.47 16 43 H 0.07 -0.43 7.79 -2.38 -0.02 -0.45 16 44 H 0.08 -0.64 7.48 -2.39 -0.02 -0.66 16 45 H 0.08 -0.89 7.21 -2.39 -0.02 -0.91 16 46 H 0.09 -1.17 6.87 -2.39 -0.02 -1.18 16 47 H 0.11 -0.45 8.14 -2.38 -0.02 -0.47 16 48 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 49 H 0.12 -1.06 8.10 -2.39 -0.02 -1.08 16 50 H 0.18 -1.08 5.66 -2.91 -0.02 -1.10 16 51 H 0.11 -0.73 7.89 -2.39 -0.02 -0.75 16 52 H 0.40 -4.71 8.74 -74.05 -0.65 -5.36 16 53 H 0.16 0.09 4.86 -2.91 -0.01 0.07 16 54 H 0.12 -1.56 7.65 -2.39 -0.02 -1.58 16 55 H 0.09 -0.63 7.75 -2.39 -0.02 -0.65 16 Total: 0.00 -22.14 445.31 4.81 -17.33 By element: Atomic # 1 Polarization: -14.26 SS G_CDS: 0.98 Total: -13.28 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: 6.43 Total: 18.35 kcal Atomic # 7 Polarization: -0.62 SS G_CDS: -3.14 Total: -3.76 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -3.26 Total: -8.85 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 1.46 Total: -0.33 kcal Atomic # 14 Polarization: -11.79 SS G_CDS: 2.33 Total: -9.46 kcal Total: -22.14 4.81 -17.33 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14186584_12360598.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.540 kcal (2) G-P(sol) polarization free energy of solvation -22.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds